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The map label for this gene is ydiU [C]

Identifier: 103487049

GI number: 103487049

Start: 1633628

End: 1635091

Strand: Reverse

Name: ydiU [C]

Synonym: Sala_1564

Alternate gene names: 103487049

Gene position: 1635091-1633628 (Counterclockwise)

Preceding gene: 103487050

Following gene: 103487048

Centisome position: 48.88

GC content: 67.49

Gene sequence:

>1464_bases
ATGCAATTTGCCTTCGACAACAGTTTTCATGCCGACATGCAGGGCTTTTATGCGCCTGCCGAAGCTGCGAAGCCATCGGC
GCCCCGGCTCCTCGCGTTCAACGACGCGCTGGCTGAAAGGCTGGGCTTCGACCGACGTGGCGTCGATGCCGACGAGCTTG
CGCGGGTGTTTTCGGGGGAGGAACTGCCCGAAGGCGCCGCGCCCATCGCGCTCGCCTATGCCGGACACCAGTTCGGCCAT
TTTTCGCCGCAGCTCGGCGATGGCCGCGCGTTGCTGCTCGGCGAGATCGTCGCGCCCGACGGCGCGCGCTTCGACATTCA
GCTCAAGGGGTCGGGGCCGACCGCCTTTTCGCGTGGCGGCGACGGCAAGGCGGCGATCGGTCCCGTGCTGCGCGAGTTCC
TCGTGTCCGAGGCGATGGCGGCGATGGGCGTGCCGACGACGCGCGCGCTCGCAGCGGTGACGACGGGCGAGCGCGTCGAG
CGTGAGCGCGCGCATCCGGGCGCGGTGCTCACCCGCGTCGCCAGCAGCCATATCCGCGTCGGCACCTTCCAGTTCTTTGC
CGCGCATTTCGGTGCCGACCATGTCGTACAATTGTCCGATTACAGCATCGCGCGGCATTTTCCCGATCTCGCCGATGCCG
CCAACCCGCACCTCGCCTTGCTCGACCGGGTGATCGGCCTGCAATGCGCGCTCATTGCGCGCTGGCTGGGTGTCGGCTTC
ATCCACGGGGTGATGAACACCGACAATGTCGCGATCAGCGGCGAGACGATCGATTATGGCCCCTGTGCCTTCATGGACCG
CTTCGCCGCGAACACGGTGTTCAGTTCGATCGATGCGACCGGCCGTTATGCCTATGGCCGCCAGCCGCAGATCATGCACT
GGAACATGGCGCGCTTTGCCGAGGCGCTCCTGCCCGCGATCCACCGCGTTTCGCCCGCCGATGTCGAGGCGGCGAAAGCG
CTCGTCGATGCGATTCCGGGGCGGTTTCGTGCAGCGTGGCACGCGCAGGTCCGCGAGAAACTCGGCCTTTCGACGAGCGC
GGGCGACGATGCCGAGCTGATCGACAGGCTGTTCGACGAGCTGGAGAAGCACAGCGTCGATTTCACCACCTTCTTTCGCG
CGCTCGCAATGCTGCTGCGCGGCGAGGGGGCGATGATGCAGGCGCTGCTGCCCGCGCCCGACGCGATGGCGCCGTGGATC
GCCGACTGGTGGCAGCGTATCGAACAGGACGCGGCCAATCCGCTCGACCTCGCCGACGCGATGGACGCCGTGAACCCGCT
CTATATCCCGCGCAATCATCGCGTCGAAGCGGCGCTCGAAGCCGCCGAGGCAGGCGATCCGGCGCCCTGGCTCGAACTGC
TGGAGGTCGTGCGTCAGCCGTTCGCAGCGCGCGCCGGGCGCGAGCGCTTCGCCGAACCCGCGCCCGCCGATGCGGCGCCC
TATACGACCTTTTGCGGCACATGA

Upstream 100 bases:

>100_bases
CACTCATGCATTGAGAGCGGGAAGGGCGGCGTCGCGCTTTTCCGGGCCTGCGCTTGCAATTGCTTGGTTACCATACAAAC
TACAATCGGGAGCCCCCACC

Downstream 100 bases:

>100_bases
AGCATTGAGCCGCCGCCGGGCCGTTGCTACGGACGGCGCCGCATCGGCCAAAGGATAAATCATTGACGTCAGCAAAGGAT
TCGCCCGTGAAGATCGCCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MQFAFDNSFHADMQGFYAPAEAAKPSAPRLLAFNDALAERLGFDRRGVDADELARVFSGEELPEGAAPIALAYAGHQFGH
FSPQLGDGRALLLGEIVAPDGARFDIQLKGSGPTAFSRGGDGKAAIGPVLREFLVSEAMAAMGVPTTRALAAVTTGERVE
RERAHPGAVLTRVASSHIRVGTFQFFAAHFGADHVVQLSDYSIARHFPDLADAANPHLALLDRVIGLQCALIARWLGVGF
IHGVMNTDNVAISGETIDYGPCAFMDRFAANTVFSSIDATGRYAYGRQPQIMHWNMARFAEALLPAIHRVSPADVEAAKA
LVDAIPGRFRAAWHAQVREKLGLSTSAGDDAELIDRLFDELEKHSVDFTTFFRALAMLLRGEGAMMQALLPAPDAMAPWI
ADWWQRIEQDAANPLDLADAMDAVNPLYIPRNHRVEAALEAAEAGDPAPWLELLEVVRQPFAARAGRERFAEPAPADAAP
YTTFCGT

Sequences:

>Translated_487_residues
MQFAFDNSFHADMQGFYAPAEAAKPSAPRLLAFNDALAERLGFDRRGVDADELARVFSGEELPEGAAPIALAYAGHQFGH
FSPQLGDGRALLLGEIVAPDGARFDIQLKGSGPTAFSRGGDGKAAIGPVLREFLVSEAMAAMGVPTTRALAAVTTGERVE
RERAHPGAVLTRVASSHIRVGTFQFFAAHFGADHVVQLSDYSIARHFPDLADAANPHLALLDRVIGLQCALIARWLGVGF
IHGVMNTDNVAISGETIDYGPCAFMDRFAANTVFSSIDATGRYAYGRQPQIMHWNMARFAEALLPAIHRVSPADVEAAKA
LVDAIPGRFRAAWHAQVREKLGLSTSAGDDAELIDRLFDELEKHSVDFTTFFRALAMLLRGEGAMMQALLPAPDAMAPWI
ADWWQRIEQDAANPLDLADAMDAVNPLYIPRNHRVEAALEAAEAGDPAPWLELLEVVRQPFAARAGRERFAEPAPADAAP
YTTFCGT
>Mature_487_residues
MQFAFDNSFHADMQGFYAPAEAAKPSAPRLLAFNDALAERLGFDRRGVDADELARVFSGEELPEGAAPIALAYAGHQFGH
FSPQLGDGRALLLGEIVAPDGARFDIQLKGSGPTAFSRGGDGKAAIGPVLREFLVSEAMAAMGVPTTRALAAVTTGERVE
RERAHPGAVLTRVASSHIRVGTFQFFAAHFGADHVVQLSDYSIARHFPDLADAANPHLALLDRVIGLQCALIARWLGVGF
IHGVMNTDNVAISGETIDYGPCAFMDRFAANTVFSSIDATGRYAYGRQPQIMHWNMARFAEALLPAIHRVSPADVEAAKA
LVDAIPGRFRAAWHAQVREKLGLSTSAGDDAELIDRLFDELEKHSVDFTTFFRALAMLLRGEGAMMQALLPAPDAMAPWI
ADWWQRIEQDAANPLDLADAMDAVNPLYIPRNHRVEAALEAAEAGDPAPWLELLEVVRQPFAARAGRERFAEPAPADAAP
YTTFCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=344, Percent_Identity=40.406976744186, Blast_Score=242, Evalue=6e-64,
Organism=Escherichia coli, GI1787999, Length=465, Percent_Identity=35.9139784946237, Blast_Score=285, Evalue=4e-78,
Organism=Saccharomyces cerevisiae, GI6325034, Length=328, Percent_Identity=33.2317073170732, Blast_Score=175, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1564_SPHAL (Q1GSU5)

Other databases:

- EMBL:   CP000356
- RefSeq:   YP_616610.1
- GeneID:   4082678
- GenomeReviews:   CP000356_GR
- KEGG:   sal:Sala_1564
- NMPDR:   fig|317655.9.peg.1497
- HOGENOM:   HBG683993
- OMA:   RRDIQLK
- BioCyc:   SALA317655:SALA_1564-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 52597; Mature: 52597

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFAFDNSFHADMQGFYAPAEAAKPSAPRLLAFNDALAERLGFDRRGVDADELARVFSGE
CCCCCCCCCCHHHHHCCCCHHCCCCCCCEEEEEHHHHHHHHCCCCCCCCHHHHHHHHCCC
ELPEGAAPIALAYAGHQFGHFSPQLGDGRALLLGEIVAPDGARFDIQLKGSGPTAFSRGG
CCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCC
DGKAAIGPVLREFLVSEAMAAMGVPTTRALAAVTTGERVERERAHPGAVLTRVASSHIRV
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEE
GTFQFFAAHFGADHVVQLSDYSIARHFPDLADAANPHLALLDRVIGLQCALIARWLGVGF
HHHHHHHHHHCCCCEEEECCCHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IHGVMNTDNVAISGETIDYGPCAFMDRFAANTVFSSIDATGRYAYGRQPQIMHWNMARFA
HHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHH
EALLPAIHRVSPADVEAAKALVDAIPGRFRAAWHAQVREKLGLSTSAGDDAELIDRLFDE
HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
LEKHSVDFTTFFRALAMLLRGEGAMMQALLPAPDAMAPWIADWWQRIEQDAANPLDLADA
HHHCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHH
MDAVNPLYIPRNHRVEAALEAAEAGDPAPWLELLEVVRQPFAARAGRERFAEPAPADAAP
HHHCCCEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
YTTFCGT
CCCCCCC
>Mature Secondary Structure
MQFAFDNSFHADMQGFYAPAEAAKPSAPRLLAFNDALAERLGFDRRGVDADELARVFSGE
CCCCCCCCCCHHHHHCCCCHHCCCCCCCEEEEEHHHHHHHHCCCCCCCCHHHHHHHHCCC
ELPEGAAPIALAYAGHQFGHFSPQLGDGRALLLGEIVAPDGARFDIQLKGSGPTAFSRGG
CCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCC
DGKAAIGPVLREFLVSEAMAAMGVPTTRALAAVTTGERVERERAHPGAVLTRVASSHIRV
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEE
GTFQFFAAHFGADHVVQLSDYSIARHFPDLADAANPHLALLDRVIGLQCALIARWLGVGF
HHHHHHHHHHCCCCEEEECCCHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IHGVMNTDNVAISGETIDYGPCAFMDRFAANTVFSSIDATGRYAYGRQPQIMHWNMARFA
HHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHH
EALLPAIHRVSPADVEAAKALVDAIPGRFRAAWHAQVREKLGLSTSAGDDAELIDRLFDE
HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
LEKHSVDFTTFFRALAMLLRGEGAMMQALLPAPDAMAPWIADWWQRIEQDAANPLDLADA
HHHCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHH
MDAVNPLYIPRNHRVEAALEAAEAGDPAPWLELLEVVRQPFAARAGRERFAEPAPADAAP
HHHCCCEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
YTTFCGT
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA