Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487045

Identifier: 103487045

GI number: 103487045

Start: 1624715

End: 1625287

Strand: Reverse

Name: 103487045

Synonym: Sala_1560

Alternate gene names: NA

Gene position: 1625287-1624715 (Counterclockwise)

Preceding gene: 103487046

Following gene: 103487043

Centisome position: 48.59

GC content: 65.79

Gene sequence:

>573_bases
ATGGAAGCCCTGTTCACCTCGACCGCGGTCGTCGCGCTCGCCGAAATCGGCGACAAGACGCAGTTGCTCGCGATCCTGCT
CGCGGCGCGCTTTGGACGCCCGCTGCCGATCATCCTTGGCATATTGGTCGCAACGCTTGCGAACCACGCCCTCGCGGCGC
TGCTCGGCGCGCAGGCGGCCGCCCTGCTCGACAGCCCGCTCTTTCGCTATGCCATCGGAGCGTCGTTCATCGCGATGGCG
GCATGGACGCTGGTGCCCGATACATTCGACGATGACGATGACCCGAAACCGCGCTTCGGCGCCTTTCTGACGACGCTCAT
CGCCTTCTTCCTCGTCGAAATGGGGGACAAGACGCAGGTGGCGACGATCGCGCTCGGTGCGCAATATCAGGCGGTCGTCG
CGGTCACCGCGGGCACGACGCTCGGCATGATGATCGCCAATGTGCCTGCGGTCTTCCTTGGCAACGAACTGCTGAAGCGG
GTCGACCTTGCCAGGGTGCGCCGGATCGCCGCCGCGCTGTTTCTTGTGATCGGGATCTGGGTGCTCGCCCAGACGGCGGG
GTGGCTGCGGTAG

Upstream 100 bases:

>100_bases
TCACCGCTTGGGCGAGACCAATGGCGTCGAGCCTCCGTCCGGGCCGGGCGGCGGGTTTGACGCCCGTTGGAATCGCACGC
CGCCCGGCCCCGGAGTCGTC

Downstream 100 bases:

>100_bases
CGGCCCGGAGGTCAGGACTTACTCGGCGTTGCGTGTCGCGAGCATCCGCTCGAAGCGCCAGCTCGACGCGCACATGGCAT
CCAGATCGCGCTCGGCCGCC

Product: membrane protein-like protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MEALFTSTAVVALAEIGDKTQLLAILLAARFGRPLPIILGILVATLANHALAALLGAQAAALLDSPLFRYAIGASFIAMA
AWTLVPDTFDDDDDPKPRFGAFLTTLIAFFLVEMGDKTQVATIALGAQYQAVVAVTAGTTLGMMIANVPAVFLGNELLKR
VDLARVRRIAAALFLVIGIWVLAQTAGWLR

Sequences:

>Translated_190_residues
MEALFTSTAVVALAEIGDKTQLLAILLAARFGRPLPIILGILVATLANHALAALLGAQAAALLDSPLFRYAIGASFIAMA
AWTLVPDTFDDDDDPKPRFGAFLTTLIAFFLVEMGDKTQVATIALGAQYQAVVAVTAGTTLGMMIANVPAVFLGNELLKR
VDLARVRRIAAALFLVIGIWVLAQTAGWLR
>Mature_190_residues
MEALFTSTAVVALAEIGDKTQLLAILLAARFGRPLPIILGILVATLANHALAALLGAQAAALLDSPLFRYAIGASFIAMA
AWTLVPDTFDDDDDPKPRFGAFLTTLIAFFLVEMGDKTQVATIALGAQYQAVVAVTAGTTLGMMIANVPAVFLGNELLKR
VDLARVRRIAAALFLVIGIWVLAQTAGWLR

Specific function: Unknown

COG id: COG2119

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20093; Mature: 20093

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEALFTSTAVVALAEIGDKTQLLAILLAARFGRPLPIILGILVATLANHALAALLGAQAA
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLDSPLFRYAIGASFIAMAAWTLVPDTFDDDDDPKPRFGAFLTTLIAFFLVEMGDKTQV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEE
ATIALGAQYQAVVAVTAGTTLGMMIANVPAVFLGNELLKRVDLARVRRIAAALFLVIGIW
HEEEECCCCEEEEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLAQTAGWLR
HHHHHHCCCC
>Mature Secondary Structure
MEALFTSTAVVALAEIGDKTQLLAILLAARFGRPLPIILGILVATLANHALAALLGAQAA
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLDSPLFRYAIGASFIAMAAWTLVPDTFDDDDDPKPRFGAFLTTLIAFFLVEMGDKTQV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEE
ATIALGAQYQAVVAVTAGTTLGMMIANVPAVFLGNELLKRVDLARVRRIAAALFLVIGIW
HEEEECCCCEEEEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLAQTAGWLR
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA