| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487024
Identifier: 103487024
GI number: 103487024
Start: 1606534
End: 1607067
Strand: Reverse
Name: 103487024
Synonym: Sala_1539
Alternate gene names: NA
Gene position: 1607067-1606534 (Counterclockwise)
Preceding gene: 103487025
Following gene: 103487023
Centisome position: 48.04
GC content: 73.41
Gene sequence:
>534_bases ATGCGCAGGGTTAGCGTTGCCCTCGCGCTGGCGGCGCTGCTGCTCGCGGCGTGCGAGCGCGGGGCGAACGGCGAGGAGGC GATCGACGCCGGAAATCCGCTGGAGATTGCGGCGCGCGAACGCGGCGTTGTCCGCCCTGAAGCGGCTACGCCGGTCGGCG TGTTCGAGCGCGCGCACGACCTTGGCCGCGACGCGATGTGCGTCGTGCCCGACGGGGCGGGGCAGTGGCGCTTTGCCGTA ACCGCGGCCTTCGGCGCCACGCTGTCCTGCACCGCGCGGGGGACGATGGTGCGCGAGGGGGACGGGTGGCGGATGCGCTT CGCGGGGGCGAAAGGGTGCGAGGCGCTGGCCCACGAGGAAAATGACGAGTTGCGCCTGCCGGGACGCCTGCCGCCGCAAT GCGCGCTGCTCTGCCCGAACCGCGCCTCGCTGTCGGGGCTGCGGCTGCCGCGCGCGAGCTGGTCGGCGGATGATGCAAGG GGCTTGCGGATCGCCGACGGTCGCGGCAATATCCTCCGGCCCTGTGCAGGCTGA
Upstream 100 bases:
>100_bases CTGCGCGTGAAGCCCGCGGGGCCCGCCTGTCACACCGGGCGCCGGTCGTGCTTCTATCGCCGCGTCGAGGCCGACGGCGG CCTGACCTTCCTTGCGGACG
Downstream 100 bases:
>100_bases AGCGCCCGGAATCGGAGCGCTCTGGCGCTATTGACGTTCACGTCAACGGAAACTAGTTTCGTCGGCATGACCGAACCCTA CGGCCACTCGCATATCGATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 177; Mature: 177
Protein sequence:
>177_residues MRRVSVALALAALLLAACERGANGEEAIDAGNPLEIAARERGVVRPEAATPVGVFERAHDLGRDAMCVVPDGAGQWRFAV TAAFGATLSCTARGTMVREGDGWRMRFAGAKGCEALAHEENDELRLPGRLPPQCALLCPNRASLSGLRLPRASWSADDAR GLRIADGRGNILRPCAG
Sequences:
>Translated_177_residues MRRVSVALALAALLLAACERGANGEEAIDAGNPLEIAARERGVVRPEAATPVGVFERAHDLGRDAMCVVPDGAGQWRFAV TAAFGATLSCTARGTMVREGDGWRMRFAGAKGCEALAHEENDELRLPGRLPPQCALLCPNRASLSGLRLPRASWSADDAR GLRIADGRGNILRPCAG >Mature_177_residues MRRVSVALALAALLLAACERGANGEEAIDAGNPLEIAARERGVVRPEAATPVGVFERAHDLGRDAMCVVPDGAGQWRFAV TAAFGATLSCTARGTMVREGDGWRMRFAGAKGCEALAHEENDELRLPGRLPPQCALLCPNRASLSGLRLPRASWSADDAR GLRIADGRGNILRPCAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18672; Mature: 18672
Theoretical pI: Translated: 8.05; Mature: 8.05
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 4.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRVSVALALAALLLAACERGANGEEAIDAGNPLEIAARERGVVRPEAATPVGVFERAHD CCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH LGRDAMCVVPDGAGQWRFAVTAAFGATLSCTARGTMVREGDGWRMRFAGAKGCEALAHEE CCCCCEEEEECCCCCEEEEEEEECCCEEEEECCCCEEEECCCCEEEECCCCCCHHHHCCC NDELRLPGRLPPQCALLCPNRASLSGLRLPRASWSADDARGLRIADGRGNILRPCAG CCCEECCCCCCCCEEEECCCCCCCCCEECCCCCCCCCCCCCEEEECCCCCEECCCCC >Mature Secondary Structure MRRVSVALALAALLLAACERGANGEEAIDAGNPLEIAARERGVVRPEAATPVGVFERAHD CCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH LGRDAMCVVPDGAGQWRFAVTAAFGATLSCTARGTMVREGDGWRMRFAGAKGCEALAHEE CCCCCEEEEECCCCCEEEEEEEECCCEEEEECCCCEEEECCCCEEEECCCCCCHHHHCCC NDELRLPGRLPPQCALLCPNRASLSGLRLPRASWSADDARGLRIADGRGNILRPCAG CCCEECCCCCCCCEEEECCCCCCCCCEECCCCCCCCCCCCCEEEECCCCCEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA