| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is cysD [H]
Identifier: 103487012
GI number: 103487012
Start: 1593804
End: 1594709
Strand: Reverse
Name: cysD [H]
Synonym: Sala_1527
Alternate gene names: 103487012
Gene position: 1594709-1593804 (Counterclockwise)
Preceding gene: 103487013
Following gene: 103487011
Centisome position: 47.67
GC content: 63.02
Gene sequence:
>906_bases ATGACCGATACGCTGACCCATCTCGACCGGCTGGAGGCCGAGAGCATCCATATCATGCGCGAAGTGATGGCCGACGCGGC GAAGCCCGTGATGCTGTACAGCGTGGGCAAGGACAGCGCGGTGATGCTGCACCTCGCGCGCAAGGCCTTTTATCCCTCGC CGCCGCCCTTCCCGCTGCTGCACGTCGACACGACGTGGAAGTTCCGGGCGATGTACGAGCTGCGCGACCGGATGGCGGCC GAGAGCGGCATGGAACTCATCGTCCATCAGAACCCCGAAGCGAAAGCGCGGGGCATCAATCCGTTCGACCATGGCCCGCT GCATACCGACATGTGGAAGACCGAGGGGCTCAAGCAGGCGCTCGATCTCCACGGCTTCGATGTCGCTTTCGGCGGCGCGC GGCGCGACGAGGAAAAGAGCCGTGCGAAGGAACGTATCTTTTCCTTCCGCACCGCGAGCCACGGCTGGGATCCCAAGAAG CAGCGGCCCGAACTGTGGAATCTCTACAACGCGCGCAAGGCGAAGGGCGAGAGCATCCGTGTGTTCCCGATCTCCAACTG GACCGAGCTCGACATCTGGCAATATATCGCGCGCGAAAATATCCCGATCGTGCCGCTCTATTTTGCCGCGCCGCGCCCGA CGGTGGAGCGCGACGGCCTTTTGCTGATGGTCGATGACGATCGCTTTCCGCTGCGGCCCGGTGAAGTGCCGACCCTCCGC TCGGTGCGCTTCCGCACGCTGGGTTGTTATCCGCTCACCGGCGCGGTCGAGAGCGAGGCGAAAACATTGTCCGAGGTCAT TCAGGAGATGCTGCTGACGACGACCAGCGAACGCCAGGGGCGCATCATCGACAAGGACAGCGGTGATGCCAGCATGGAGA AGAAGAAGCAGGAGGGCTACTTCTGA
Upstream 100 bases:
>100_bases GTCGATCCGGCCTTGTGATGGCCAGCCTCCCAAGTCTGGCTTGCAGCGCCGAAAGGCCATACAGCTTGATCGCTTCATGG AGGGGCGGCAAGGGCAGGGC
Downstream 100 bases:
>100_bases TGACCGATCCCATCTACGTCACCGACGCGCTGATCGCCCAGGACATCGACGCCTATCTCGCGGGTCACGAGAAGAAGTCG CTGCTGCGCTTCATCACCTG
Product: sulfate adenylyltransferase subunit 2
Products: NA
Alternate protein names: ATP-sulfurylase small subunit; Sulfate adenylate transferase; SAT [H]
Number of amino acids: Translated: 301; Mature: 300
Protein sequence:
>301_residues MTDTLTHLDRLEAESIHIMREVMADAAKPVMLYSVGKDSAVMLHLARKAFYPSPPPFPLLHVDTTWKFRAMYELRDRMAA ESGMELIVHQNPEAKARGINPFDHGPLHTDMWKTEGLKQALDLHGFDVAFGGARRDEEKSRAKERIFSFRTASHGWDPKK QRPELWNLYNARKAKGESIRVFPISNWTELDIWQYIARENIPIVPLYFAAPRPTVERDGLLLMVDDDRFPLRPGEVPTLR SVRFRTLGCYPLTGAVESEAKTLSEVIQEMLLTTTSERQGRIIDKDSGDASMEKKKQEGYF
Sequences:
>Translated_301_residues MTDTLTHLDRLEAESIHIMREVMADAAKPVMLYSVGKDSAVMLHLARKAFYPSPPPFPLLHVDTTWKFRAMYELRDRMAA ESGMELIVHQNPEAKARGINPFDHGPLHTDMWKTEGLKQALDLHGFDVAFGGARRDEEKSRAKERIFSFRTASHGWDPKK QRPELWNLYNARKAKGESIRVFPISNWTELDIWQYIARENIPIVPLYFAAPRPTVERDGLLLMVDDDRFPLRPGEVPTLR SVRFRTLGCYPLTGAVESEAKTLSEVIQEMLLTTTSERQGRIIDKDSGDASMEKKKQEGYF >Mature_300_residues TDTLTHLDRLEAESIHIMREVMADAAKPVMLYSVGKDSAVMLHLARKAFYPSPPPFPLLHVDTTWKFRAMYELRDRMAAE SGMELIVHQNPEAKARGINPFDHGPLHTDMWKTEGLKQALDLHGFDVAFGGARRDEEKSRAKERIFSFRTASHGWDPKKQ RPELWNLYNARKAKGESIRVFPISNWTELDIWQYIARENIPIVPLYFAAPRPTVERDGLLLMVDDDRFPLRPGEVPTLRS VRFRTLGCYPLTGAVESEAKTLSEVIQEMLLTTTSERQGRIIDKDSGDASMEKKKQEGYF
Specific function: First step in the sulfate activation pathway. This reaction occurs early in the reductive branch of the cysteine biosynthetic pathway. [C]
COG id: COG0175
COG function: function code EH; 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PAPS reductase family. CysD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789109, Length=298, Percent_Identity=71.4765100671141, Blast_Score=439, Evalue=1e-124,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002500 - InterPro: IPR014729 - InterPro: IPR011784 [H]
Pfam domain/function: PF01507 PAPS_reduct [H]
EC number: =2.7.7.4 [H]
Molecular weight: Translated: 34501; Mature: 34370
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTLTHLDRLEAESIHIMREVMADAAKPVMLYSVGKDSAVMLHLARKAFYPSPPPFPLL CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEE HVDTTWKFRAMYELRDRMAAESGMELIVHQNPEAKARGINPFDHGPLHTDMWKTEGLKQA EECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH LDLHGFDVAFGGARRDEEKSRAKERIFSFRTASHGWDPKKQRPELWNLYNARKAKGESIR HHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE VFPISNWTELDIWQYIARENIPIVPLYFAAPRPTVERDGLLLMVDDDRFPLRPGEVPTLR EEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCHH SVRFRTLGCYPLTGAVESEAKTLSEVIQEMLLTTTSERQGRIIDKDSGDASMEKKKQEGY HHHEEEECCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCC F C >Mature Secondary Structure TDTLTHLDRLEAESIHIMREVMADAAKPVMLYSVGKDSAVMLHLARKAFYPSPPPFPLL CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEE HVDTTWKFRAMYELRDRMAAESGMELIVHQNPEAKARGINPFDHGPLHTDMWKTEGLKQA EECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH LDLHGFDVAFGGARRDEEKSRAKERIFSFRTASHGWDPKKQRPELWNLYNARKAKGESIR HHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE VFPISNWTELDIWQYIARENIPIVPLYFAAPRPTVERDGLLLMVDDDRFPLRPGEVPTLR EEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCHH SVRFRTLGCYPLTGAVESEAKTLSEVIQEMLLTTTSERQGRIIDKDSGDASMEKKKQEGY HHHEEEECCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCC F C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11259647 [H]