| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is bglX [H]
Identifier: 103486996
GI number: 103486996
Start: 1575805
End: 1578285
Strand: Reverse
Name: bglX [H]
Synonym: Sala_1511
Alternate gene names: 103486996
Gene position: 1578285-1575805 (Counterclockwise)
Preceding gene: 103486997
Following gene: 103486993
Centisome position: 47.18
GC content: 64.21
Gene sequence:
>2481_bases ATGCGGCGGAAATCTATAGGGGTGGCACTTGCGCTCTCGCTTGCCGGGGCTGCTGGCACGGCCGTGGCGATGGACGAGGG GGGGACGCCGGTGCATCCCGAAATCTGGCCTGTTGCGCGTAGCCCCCAGGCAATCAGTGACCCCGCAACCGAACGCCGCA TCGACGCCCTTCTCGAGCGGATGACGGTCGAGCAAAAGGTCGGACAGTTGATTCAGGCCGACATCAGCGCGATCACGCCC AAGGATCTCGAAACCTACCCCCTGGGTTCGATTCTTGCGGGTGGAAACAGCGGTCCATACGGCAATGAACGTTCGACTGC TGCCGACTGGGCGCGACTCGTTCGAGAGTTTCGCGAAGCATCGCTGCGACCGGGTGTGAACGGTGTCGCGGTTCCGATCA TCTTCGGCATCGATGCCGTCCACGGGCACAACAATGTTCCAGGCGCGACAATTTTTCCGCACAATATCGGGCTCGGCGCC GCACGCGACCCCGGCCTGATCCGCCGTATCGGCGAAATCACGGCCGCCGAAATCGCCGCGAGCGGTATCGAATGGACGTT CGCACCGACGCTCGCGGTGCCGCGCGATCTTCGCTGGGGCCGCTCCTATGAGGGCTATGCCGCCGATCCGCAGCTTGTTG CGCAATATGCGAAAGCAATGACGCTGGGGCTGCAGGGCGAACTCATACCGGGGCAAGCCATCGCGAAGGACCGCGTCGCC GCGACGGCAAAGCATTTTCTGGCCGATGGCGGAACCGAGCATGGCAAGGATCAGGGCGACGCCAGGATCAGCGAGGCCGA GCTCATCGCGGTCCATGCGCAAGGCTATCCCGCCGCGATTGACGCGGGGGCGCTAACCGTCATGGCCAGTTTCTCAAGCT GGAACGGGACCAAGCATCACGGCAACAAAGCGCTGCTGACCACGATCCTGAAAGAACGGATGGGGTTCGAGGGTTTCGTT GTCGGTGACTGGAACGGTCATGGTCAGGTTCCGGGGTGCAGCGTCACCGATTGTCCCCAATCGATCCTGGCCGGACTGGA CATGTTCATGGCGCCGGACAGCTGGAAGGGGCTTTACGCATCGACGCTCGAACAGGCGAAGTCGGGGATCATTCCCGCCG CGCGGCTCGATGATGCGGTCCGCCGGATTCTGCGCGTAAAGTTCAAGCTGGGTCTTTTCGACGGCGTCCGGGCTGACCGG GCCGATCCGTCGATCATCGGGGCGCCGGATCATCTGGCCGTCGCGCGCGAGGCGGTCGCCAAATCGCTCGTCCTGCTCAA GAATAATGGCGGTCTGCTGCCCATCCGCCCCGGCGCGCGCGTGCTGGTGGCCGGTCCGGCGGCGCACAGCATGGCGATGC AATCCGGCGGGTGGACCGTCAGCTGGCAGGGCAGCGACGTCACCCGCGACGATTTTCCGAACGGTCAGACGATCTGGGAA GGGATTGAAGAGGCGGTCCGCGCGGCGGGCGGCGCGGCGACGCTTTCAGCCGACGGCAGCTTTACAACAAAACCCGATGT CGCGATCTTTATATTTGGTGAGGAGCCTTATGCTGAGTTTCAGGGCGACGTTCCGACGCTCGATTACCAGCCGGTCAATC CTGCCGACCTCGCCCGGCTCAAGCGGCTGAAGGAAGCAGGGATTCCCGTTGTCGCAGTCTTTCTCTCCGGTCGGCCGTTG TTCACCAATCCCGAGATCAACGCCGCGGACGCCTTCGTCGCTGCGTGGCTGCCCGGTTCACAGGGCGCCGGCGTCGCGGA CGTCCTTGTTGCCCGTCGCGACGGCAGGCCGATCCGCGATTTCAGCGGAACACTGCCCTTCGCCTGGCCCGCCACGGCAG CGTCGCCCATCGCCGCGCCGCTGTTTCCGATCGGCTATGGTCTTCGCTACGACAAGCCGCAGATTGTGCCGCTGCTCCCC GAAGATCCCGGAATCGACCTCGCCGCGGCGCTCAATCTCGAAAATTTCTTCGCCGGCGGCCGTGCGCGCGCGCCCTGGTC GATGAGCGTCGGCGATGATGGCGGCGTGCGGCCCGTCGAATCGGCCGCCGTCGTCAGTCCCAACGGGATGCTTTCCGTGA AATCGGTCGATGTAAAGGCGCAGGAGGATGGCAAGCAGTTTCGATGGGCCGGGATGGGATCGGTCCAGATTTCCGGACCG AATGCCGACCTCATGCGTCATCTTGGCCAGGACATGGCCTTGCGCCTCGACGTCCGCGTCGACGCTGTCGGCGAAGGACG CGTCAGCATCGCTTTCGGAAATGCCGCTCTCGACGTGACCGACTGGATCGGCGCGGCGCCGATAGGAAAATTGTCGAAGC TCCAGATTCGACTGCGCTGCTTTGCCGACCGTGGCGCCGATCTGCAGCGCGTTGGAAATCCGCTCAGCCTCACGGGGCAT GAGGGGCTCGGGCTGACGCTGCTCGCGGCAAGAATTGAGTCCTCACCGGATGCGCCCCCTTGTCCTTCGAACGCGGAATA G
Upstream 100 bases:
>100_bases GCGCCATCTCCTGAATGTCGATCCAGCCCGCTCCTCTTGATTTTGACAAATCTTTGTGACACTTGAAATGAGAACGTTCA CAAGAGTGAAGGGAGAGACG
Downstream 100 bases:
>100_bases AGTTCGACCGCTCCAGGCGCCGTTGCGCCTCGACCGCTGGCGACGGCGCTTCCCTAGATCGCCTTGCCGACCGGTAAAAG GAGAGCGGGCGATCGCGAAT
Product: Beta-glucosidase
Products: NA
Alternate protein names: Beta-D-glucoside glucohydrolase; Cellobiase; Gentiobiase [H]
Number of amino acids: Translated: 826; Mature: 826
Protein sequence:
>826_residues MRRKSIGVALALSLAGAAGTAVAMDEGGTPVHPEIWPVARSPQAISDPATERRIDALLERMTVEQKVGQLIQADISAITP KDLETYPLGSILAGGNSGPYGNERSTAADWARLVREFREASLRPGVNGVAVPIIFGIDAVHGHNNVPGATIFPHNIGLGA ARDPGLIRRIGEITAAEIAASGIEWTFAPTLAVPRDLRWGRSYEGYAADPQLVAQYAKAMTLGLQGELIPGQAIAKDRVA ATAKHFLADGGTEHGKDQGDARISEAELIAVHAQGYPAAIDAGALTVMASFSSWNGTKHHGNKALLTTILKERMGFEGFV VGDWNGHGQVPGCSVTDCPQSILAGLDMFMAPDSWKGLYASTLEQAKSGIIPAARLDDAVRRILRVKFKLGLFDGVRADR ADPSIIGAPDHLAVAREAVAKSLVLLKNNGGLLPIRPGARVLVAGPAAHSMAMQSGGWTVSWQGSDVTRDDFPNGQTIWE GIEEAVRAAGGAATLSADGSFTTKPDVAIFIFGEEPYAEFQGDVPTLDYQPVNPADLARLKRLKEAGIPVVAVFLSGRPL FTNPEINAADAFVAAWLPGSQGAGVADVLVARRDGRPIRDFSGTLPFAWPATAASPIAAPLFPIGYGLRYDKPQIVPLLP EDPGIDLAAALNLENFFAGGRARAPWSMSVGDDGGVRPVESAAVVSPNGMLSVKSVDVKAQEDGKQFRWAGMGSVQISGP NADLMRHLGQDMALRLDVRVDAVGEGRVSIAFGNAALDVTDWIGAAPIGKLSKLQIRLRCFADRGADLQRVGNPLSLTGH EGLGLTLLAARIESSPDAPPCPSNAE
Sequences:
>Translated_826_residues MRRKSIGVALALSLAGAAGTAVAMDEGGTPVHPEIWPVARSPQAISDPATERRIDALLERMTVEQKVGQLIQADISAITP KDLETYPLGSILAGGNSGPYGNERSTAADWARLVREFREASLRPGVNGVAVPIIFGIDAVHGHNNVPGATIFPHNIGLGA ARDPGLIRRIGEITAAEIAASGIEWTFAPTLAVPRDLRWGRSYEGYAADPQLVAQYAKAMTLGLQGELIPGQAIAKDRVA ATAKHFLADGGTEHGKDQGDARISEAELIAVHAQGYPAAIDAGALTVMASFSSWNGTKHHGNKALLTTILKERMGFEGFV VGDWNGHGQVPGCSVTDCPQSILAGLDMFMAPDSWKGLYASTLEQAKSGIIPAARLDDAVRRILRVKFKLGLFDGVRADR ADPSIIGAPDHLAVAREAVAKSLVLLKNNGGLLPIRPGARVLVAGPAAHSMAMQSGGWTVSWQGSDVTRDDFPNGQTIWE GIEEAVRAAGGAATLSADGSFTTKPDVAIFIFGEEPYAEFQGDVPTLDYQPVNPADLARLKRLKEAGIPVVAVFLSGRPL FTNPEINAADAFVAAWLPGSQGAGVADVLVARRDGRPIRDFSGTLPFAWPATAASPIAAPLFPIGYGLRYDKPQIVPLLP EDPGIDLAAALNLENFFAGGRARAPWSMSVGDDGGVRPVESAAVVSPNGMLSVKSVDVKAQEDGKQFRWAGMGSVQISGP NADLMRHLGQDMALRLDVRVDAVGEGRVSIAFGNAALDVTDWIGAAPIGKLSKLQIRLRCFADRGADLQRVGNPLSLTGH EGLGLTLLAARIESSPDAPPCPSNAE >Mature_826_residues MRRKSIGVALALSLAGAAGTAVAMDEGGTPVHPEIWPVARSPQAISDPATERRIDALLERMTVEQKVGQLIQADISAITP KDLETYPLGSILAGGNSGPYGNERSTAADWARLVREFREASLRPGVNGVAVPIIFGIDAVHGHNNVPGATIFPHNIGLGA ARDPGLIRRIGEITAAEIAASGIEWTFAPTLAVPRDLRWGRSYEGYAADPQLVAQYAKAMTLGLQGELIPGQAIAKDRVA ATAKHFLADGGTEHGKDQGDARISEAELIAVHAQGYPAAIDAGALTVMASFSSWNGTKHHGNKALLTTILKERMGFEGFV VGDWNGHGQVPGCSVTDCPQSILAGLDMFMAPDSWKGLYASTLEQAKSGIIPAARLDDAVRRILRVKFKLGLFDGVRADR ADPSIIGAPDHLAVAREAVAKSLVLLKNNGGLLPIRPGARVLVAGPAAHSMAMQSGGWTVSWQGSDVTRDDFPNGQTIWE GIEEAVRAAGGAATLSADGSFTTKPDVAIFIFGEEPYAEFQGDVPTLDYQPVNPADLARLKRLKEAGIPVVAVFLSGRPL FTNPEINAADAFVAAWLPGSQGAGVADVLVARRDGRPIRDFSGTLPFAWPATAASPIAAPLFPIGYGLRYDKPQIVPLLP EDPGIDLAAALNLENFFAGGRARAPWSMSVGDDGGVRPVESAAVVSPNGMLSVKSVDVKAQEDGKQFRWAGMGSVQISGP NADLMRHLGQDMALRLDVRVDAVGEGRVSIAFGNAALDVTDWIGAAPIGKLSKLQIRLRCFADRGADLQRVGNPLSLTGH EGLGLTLLAARIESSPDAPPCPSNAE
Specific function: Unknown
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788453, Length=674, Percent_Identity=28.486646884273, Blast_Score=209, Evalue=5e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019800 - InterPro: IPR002772 - InterPro: IPR001764 - InterPro: IPR017853 [H]
Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]
EC number: =3.2.1.21 [H]
Molecular weight: Translated: 86896; Mature: 86896
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRKSIGVALALSLAGAAGTAVAMDEGGTPVHPEIWPVARSPQAISDPATERRIDALLER CCCCHHCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH MTVEQKVGQLIQADISAITPKDLETYPLGSILAGGNSGPYGNERSTAADWARLVREFREA HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHH SLRPGVNGVAVPIIFGIDAVHGHNNVPGATIFPHNIGLGAARDPGLIRRIGEITAAEIAA HCCCCCCCEEEEEEEEEEEECCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH SGIEWTFAPTLAVPRDLRWGRSYEGYAADPQLVAQYAKAMTLGLQGELIPGQAIAKDRVA CCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH ATAKHFLADGGTEHGKDQGDARISEAELIAVHAQGYPAAIDAGALTVMASFSSWNGTKHH HHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEECCCEEEEEEECCCCCCCCCC GNKALLTTILKERMGFEGFVVGDWNGHGQVPGCSVTDCPQSILAGLDMFMAPDSWKGLYA CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHH STLEQAKSGIIPAARLDDAVRRILRVKFKLGLFDGVRADRADPSIIGAPDHLAVAREAVA HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCHHHHHHHHHHH KSLVLLKNNGGLLPIRPGARVLVAGPAAHSMAMQSGGWTVSWQGSDVTRDDFPNGQTIWE HEEEEEECCCCEEEECCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHH GIEEAVRAAGGAATLSADGSFTTKPDVAIFIFGEEPYAEFQGDVPTLDYQPVNPADLARL HHHHHHHHCCCCEEEECCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHH KRLKEAGIPVVAVFLSGRPLFTNPEINAADAFVAAWLPGSQGAGVADVLVARRDGRPIRD HHHHHCCCCEEEEEECCCEEECCCCCCCCCEEEEEECCCCCCCCHHHHHEECCCCCCCHH FSGTLPFAWPATAASPIAAPLFPIGYGLRYDKPQIVPLLPEDPGIDLAAALNLENFFAGG CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEECCCCCCCCEEEEECHHHHHCCC RARAPWSMSVGDDGGVRPVESAAVVSPNGMLSVKSVDVKAQEDGKQFRWAGMGSVQISGP CCCCCEEECCCCCCCCCCCCCCEEECCCCEEEEEEEEEEECCCCCEEEEECCCEEEECCC NADLMRHLGQDMALRLDVRVDAVGEGRVSIAFGNAALDVTDWIGAAPIGKLSKLQIRLRC CHHHHHHCCCCEEEEEEEEEEEECCCEEEEEECCEEEEHHHHCCCCCCCCCCEEEEEEEE FADRGADLQRVGNPLSLTGHEGLGLTLLAARIESSPDAPPCPSNAE ECCCCCCHHHCCCCEEECCCCCCCCEEEEEHHCCCCCCCCCCCCCC >Mature Secondary Structure MRRKSIGVALALSLAGAAGTAVAMDEGGTPVHPEIWPVARSPQAISDPATERRIDALLER CCCCHHCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH MTVEQKVGQLIQADISAITPKDLETYPLGSILAGGNSGPYGNERSTAADWARLVREFREA HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHH SLRPGVNGVAVPIIFGIDAVHGHNNVPGATIFPHNIGLGAARDPGLIRRIGEITAAEIAA HCCCCCCCEEEEEEEEEEEECCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH SGIEWTFAPTLAVPRDLRWGRSYEGYAADPQLVAQYAKAMTLGLQGELIPGQAIAKDRVA CCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH ATAKHFLADGGTEHGKDQGDARISEAELIAVHAQGYPAAIDAGALTVMASFSSWNGTKHH HHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEECCCEEEEEEECCCCCCCCCC GNKALLTTILKERMGFEGFVVGDWNGHGQVPGCSVTDCPQSILAGLDMFMAPDSWKGLYA CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHH STLEQAKSGIIPAARLDDAVRRILRVKFKLGLFDGVRADRADPSIIGAPDHLAVAREAVA HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCHHHHHHHHHHH KSLVLLKNNGGLLPIRPGARVLVAGPAAHSMAMQSGGWTVSWQGSDVTRDDFPNGQTIWE HEEEEEECCCCEEEECCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHH GIEEAVRAAGGAATLSADGSFTTKPDVAIFIFGEEPYAEFQGDVPTLDYQPVNPADLARL HHHHHHHHCCCCEEEECCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHH KRLKEAGIPVVAVFLSGRPLFTNPEINAADAFVAAWLPGSQGAGVADVLVARRDGRPIRD HHHHHCCCCEEEEEECCCEEECCCCCCCCCEEEEEECCCCCCCCHHHHHEECCCCCCCHH FSGTLPFAWPATAASPIAAPLFPIGYGLRYDKPQIVPLLPEDPGIDLAAALNLENFFAGG CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEECCCCCCCCEEEEECHHHHHCCC RARAPWSMSVGDDGGVRPVESAAVVSPNGMLSVKSVDVKAQEDGKQFRWAGMGSVQISGP CCCCCEEECCCCCCCCCCCCCCEEECCCCEEEEEEEEEEECCCCCEEEEECCCEEEECCC NADLMRHLGQDMALRLDVRVDAVGEGRVSIAFGNAALDVTDWIGAAPIGKLSKLQIRLRC CHHHHHHCCCCEEEEEEEEEEEECCCEEEEEECCEEEEHHHHCCCCCCCCCCEEEEEEEE FADRGADLQRVGNPLSLTGHEGLGLTLLAARIESSPDAPPCPSNAE ECCCCCCHHHCCCCEEECCCCCCCCEEEEEHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]