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The map label for this gene is ihfB [H]

Identifier: 103486981

GI number: 103486981

Start: 1559770

End: 1560048

Strand: Direct

Name: ihfB [H]

Synonym: Sala_1496

Alternate gene names: 103486981

Gene position: 1559770-1560048 (Clockwise)

Preceding gene: 103486980

Following gene: 103486985

Centisome position: 46.63

GC content: 60.57

Gene sequence:

>279_bases
ATGATCCGGTCAGAACTGGTTCAGAAGATCGCGAACGAAAACAGCGATTTGCGGGTCGAAGAGGTCGAACGCATTGTCGA
CACTTTTTTCGATTCCATCGTCGATCAGCTCGCGACGGGGGGCCGCGTCGAACTGCGCGGCTTTGGCGCTTTCTCGACCC
GCGCGCGCGAGTCGCGCACCGGTCGCAATCCGCGCACCGGCGCCGCGGTCGAGGTGAAGGCCAAGAAAGTGCCCTATTTC
AAACCCGGAAAGGAAATGCGCGAGCGGCTGAACAGCTGA

Upstream 100 bases:

>100_bases
CTGTCCGCACGTTGGGAGGGGTCTCACGTACAATCGACGGCAACGATCGATGCGTCTGCATTTGCGGGCGAAGCGTGGCT
ATGCGAGATAGGGGAAGCAC

Downstream 100 bases:

>100_bases
GCGCTATCCCAAACATCGTCATTGCGAGCGCAGCGAAGCAATCTCCAGCTATCGAACCGGAGATTGCTTCGCTGCGCTCG
CAATGACGCTATCGAAACCT

Product: histone-like DNA-binding protein

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 92; Mature: 92

Protein sequence:

>92_residues
MIRSELVQKIANENSDLRVEEVERIVDTFFDSIVDQLATGGRVELRGFGAFSTRARESRTGRNPRTGAAVEVKAKKVPYF
KPGKEMRERLNS

Sequences:

>Translated_92_residues
MIRSELVQKIANENSDLRVEEVERIVDTFFDSIVDQLATGGRVELRGFGAFSTRARESRTGRNPRTGAAVEVKAKKVPYF
KPGKEMRERLNS
>Mature_92_residues
MIRSELVQKIANENSDLRVEEVERIVDTFFDSIVDQLATGGRVELRGFGAFSTRARESRTGRNPRTGAAVEVKAKKVPYF
KPGKEMRERLNS

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=47.2527472527472, Blast_Score=96, Evalue=4e-22,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=38.4615384615385, Blast_Score=73, Evalue=5e-15,
Organism=Escherichia coli, GI1790433, Length=88, Percent_Identity=34.0909090909091, Blast_Score=60, Evalue=2e-11,
Organism=Escherichia coli, GI1788005, Length=70, Percent_Identity=37.1428571428571, Blast_Score=59, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10414; Mature: 10414

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSELVQKIANENSDLRVEEVERIVDTFFDSIVDQLATGGRVELRGFGAFSTRARESRT
CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHC
GRNPRTGAAVEVKAKKVPYFKPGKEMRERLNS
CCCCCCCCEEEEECCCCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MIRSELVQKIANENSDLRVEEVERIVDTFFDSIVDQLATGGRVELRGFGAFSTRARESRT
CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHC
GRNPRTGAAVEVKAKKVPYFKPGKEMRERLNS
CCCCCCCCEEEEECCCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA