| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is ilvC
Identifier: 103486957
GI number: 103486957
Start: 1531388
End: 1532428
Strand: Direct
Name: ilvC
Synonym: Sala_1472
Alternate gene names: 103486957
Gene position: 1531388-1532428 (Clockwise)
Preceding gene: 103486956
Following gene: 103486958
Centisome position: 45.78
GC content: 63.02
Gene sequence:
>1041_bases ATGCAGGTTTATTACGATCGTGACGCCGACCAGGATCTGATCAAGGGCAAGAAGGTCGCCGTCGTCGGCTATGGCAGCCA GGGCCATGCGCATGCGCAGAATATGCGCGACAGCGGCGTCAAGGAAGTCGCGATCGCGCTCCGTCCCGGCTCGCCGACCG CGAAAAAGGCCGAAGCCGCGGGCTTCAAGGTGATGTCGAACAAGGAAGCCGCCGCGTGGGCCGATGTCATCATGATCGCC GCCCCCGACGAGCATCAGGCGAAAATCTATGCCGAAGACATCGGCCCGAACATGAAGCCCGGCGCCGCCCTCGCCTTCGC CCACGGCCTCAACATCCATTTCGGCCTCATCGAAGCGCGCCCGGACATCGACGTCTTCATGGTCGCGCCCAAAGGGCCCG GCCATACGGTGCGCAGCGAATATCAGAAGGGCGGCGGCGTCCCCTGCCTGATCGCGGTCGCACAGGAAGCGCAAGGGTCG GCCGCGGCGGGCAACGGCTATGCCAAGGCGCTCGCCCTGTCCTACGCGTCCGCAGTTGGGGGCGGGCGCAGCGGCATCAT CGAAACGACCTTCAAGGAAGAGTGCGAGACCGACCTGTTCGGCGAACAGGCGGTGCTGTGCGGCGGCATCACCCACCTCA TTCAGGCGGGTTTCGAAACGCTCGTCGAGGCGGGCTACGCCCCCGAAATGGCCTATTTCGAATGCCTCCACGAAACCAAG CTGATCGTCGACCTCCTCTATGAAGGCGGCATCGCCAACATGCGCTATTCGATCTCGAACACCGCCGAATATGGCGACAT CAAGACCGGGCCGCGCATCATCACCGAGGAAACGAAGAAGGAAATGAAGCGCGTCCTAGCCGACATCCAGTCGGGGCGTT TCGTCAAGGATTTCGTGCTCGACAATCAGGCCGGCCAGCCTGAACTCAAGGCCAGCCGCAAGGCCGCCGCAGCGCACCCG ATCGAGCAGACGGGCGAAAAGCTCCGCGCGATGATGCCGTGGATCGCCAAGAACAAGCTGGTCGACAAGGCGAAGAATTG A
Upstream 100 bases:
>100_bases CAGGAATGACGGTTCAACCTTCGTCACCCCGGACTTGATCCGGGGTCCATGGATGCCGGATCACGTCCGGCATGACGAAT GAAAACAAGGGAAGAATGAC
Downstream 100 bases:
>100_bases TGGCCGAATCTTGACTTTCGCCATCCCGGCGAAGGCCGGAATCGTGCCGTGGCGCTTTACGCGATGGTGAGATCCCGGCC TTCGCCCGATGACGCGTTTG
Product: ketol-acid reductoisomerase
Products: NA
Alternate protein names: Acetohydroxy-acid isomeroreductase; Alpha-keto-beta-hydroxylacil reductoisomerase
Number of amino acids: Translated: 346; Mature: 346
Protein sequence:
>346_residues MQVYYDRDADQDLIKGKKVAVVGYGSQGHAHAQNMRDSGVKEVAIALRPGSPTAKKAEAAGFKVMSNKEAAAWADVIMIA APDEHQAKIYAEDIGPNMKPGAALAFAHGLNIHFGLIEARPDIDVFMVAPKGPGHTVRSEYQKGGGVPCLIAVAQEAQGS AAAGNGYAKALALSYASAVGGGRSGIIETTFKEECETDLFGEQAVLCGGITHLIQAGFETLVEAGYAPEMAYFECLHETK LIVDLLYEGGIANMRYSISNTAEYGDIKTGPRIITEETKKEMKRVLADIQSGRFVKDFVLDNQAGQPELKASRKAAAAHP IEQTGEKLRAMMPWIAKNKLVDKAKN
Sequences:
>Translated_346_residues MQVYYDRDADQDLIKGKKVAVVGYGSQGHAHAQNMRDSGVKEVAIALRPGSPTAKKAEAAGFKVMSNKEAAAWADVIMIA APDEHQAKIYAEDIGPNMKPGAALAFAHGLNIHFGLIEARPDIDVFMVAPKGPGHTVRSEYQKGGGVPCLIAVAQEAQGS AAAGNGYAKALALSYASAVGGGRSGIIETTFKEECETDLFGEQAVLCGGITHLIQAGFETLVEAGYAPEMAYFECLHETK LIVDLLYEGGIANMRYSISNTAEYGDIKTGPRIITEETKKEMKRVLADIQSGRFVKDFVLDNQAGQPELKASRKAAAAHP IEQTGEKLRAMMPWIAKNKLVDKAKN >Mature_346_residues MQVYYDRDADQDLIKGKKVAVVGYGSQGHAHAQNMRDSGVKEVAIALRPGSPTAKKAEAAGFKVMSNKEAAAWADVIMIA APDEHQAKIYAEDIGPNMKPGAALAFAHGLNIHFGLIEARPDIDVFMVAPKGPGHTVRSEYQKGGGVPCLIAVAQEAQGS AAAGNGYAKALALSYASAVGGGRSGIIETTFKEECETDLFGEQAVLCGGITHLIQAGFETLVEAGYAPEMAYFECLHETK LIVDLLYEGGIANMRYSISNTAEYGDIKTGPRIITEETKKEMKRVLADIQSGRFVKDFVLDNQAGQPELKASRKAAAAHP IEQTGEKLRAMMPWIAKNKLVDKAKN
Specific function: Valine and isoleucine biosynthesis; second step. [C]
COG id: COG0059
COG function: function code EH; Ketol-acid reductoisomerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ketol-acid reductoisomerase family
Homologues:
Organism=Escherichia coli, GI1790210, Length=303, Percent_Identity=38.6138613861386, Blast_Score=152, Evalue=2e-38, Organism=Saccharomyces cerevisiae, GI6323387, Length=293, Percent_Identity=32.0819112627986, Blast_Score=105, Evalue=8e-24,
Paralogues:
None
Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 480 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): ILVC_SPHAL (Q1GT37)
Other databases:
- EMBL: CP000356 - RefSeq: YP_616518.1 - ProteinModelPortal: Q1GT37 - SMR: Q1GT37 - GeneID: 4081244 - GenomeReviews: CP000356_GR - KEGG: sal:Sala_1472 - NMPDR: fig|317655.9.peg.1405 - HOGENOM: HBG286525 - OMA: AMKQCLK - ProtClustDB: PRK05479 - BioCyc: SALA317655:SALA_1472-MONOMER - BRENDA: 1.1.1.86 - HAMAP: MF_00435 - InterPro: IPR008927 - InterPro: IPR013023 - InterPro: IPR000506 - InterPro: IPR013328 - InterPro: IPR013116 - Gene3D: G3DSA:1.10.1040.10 - PANTHER: PTHR21371 - TIGRFAMs: TIGR00465
Pfam domain/function: PF01450 IlvC; PF07991 IlvN; SSF48179 6DGDH_C_like
EC number: =1.1.1.86
Molecular weight: Translated: 37054; Mature: 37054
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: NA
Important sites: ACT_SITE 108-108
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQVYYDRDADQDLIKGKKVAVVGYGSQGHAHAQNMRDSGVKEVAIALRPGSPTAKKAEAA CEEEECCCCCHHHHCCCEEEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCCCCHHHHHC GFKVMSNKEAAAWADVIMIAAPDEHQAKIYAEDIGPNMKPGAALAFAHGLNIHFGLIEAR CEEEECCCCHHHEEEEEEEECCCCCCCEEEEHHCCCCCCCCCEEEEECCCEEEEEEEEEC PDIDVFMVAPKGPGHTVRSEYQKGGGVPCLIAVAQEAQGSAAAGNGYAKALALSYASAVG CCCEEEEECCCCCCCHHHHHHHHCCCCEEEEEEEHHCCCCCCCCCCHHHHHHHHHHHHCC GGRSGIIETTFKEECETDLFGEQAVLCGGITHLIQAGFETLVEAGYAPEMAYFECLHETK CCCCCCEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH LIVDLLYEGGIANMRYSISNTAEYGDIKTGPRIITEETKKEMKRVLADIQSGRFVKDFVL HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCEEEHHHH DNQAGQPELKASRKAAAAHPIEQTGEKLRAMMPWIAKNKLVDKAKN CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MQVYYDRDADQDLIKGKKVAVVGYGSQGHAHAQNMRDSGVKEVAIALRPGSPTAKKAEAA CEEEECCCCCHHHHCCCEEEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCCCCHHHHHC GFKVMSNKEAAAWADVIMIAAPDEHQAKIYAEDIGPNMKPGAALAFAHGLNIHFGLIEAR CEEEECCCCHHHEEEEEEEECCCCCCCEEEEHHCCCCCCCCCEEEEECCCEEEEEEEEEC PDIDVFMVAPKGPGHTVRSEYQKGGGVPCLIAVAQEAQGSAAAGNGYAKALALSYASAVG CCCEEEEECCCCCCCHHHHHHHHCCCCEEEEEEEHHCCCCCCCCCCHHHHHHHHHHHHCC GGRSGIIETTFKEECETDLFGEQAVLCGGITHLIQAGFETLVEAGYAPEMAYFECLHETK CCCCCCEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH LIVDLLYEGGIANMRYSISNTAEYGDIKTGPRIITEETKKEMKRVLADIQSGRFVKDFVL HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCEEEHHHH DNQAGQPELKASRKAAAAHPIEQTGEKLRAMMPWIAKNKLVDKAKN CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA