| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486944
Identifier: 103486944
GI number: 103486944
Start: 1513392
End: 1514570
Strand: Reverse
Name: 103486944
Synonym: Sala_1459
Alternate gene names: NA
Gene position: 1514570-1513392 (Counterclockwise)
Preceding gene: 103486945
Following gene: 103486941
Centisome position: 45.28
GC content: 64.46
Gene sequence:
>1179_bases GTGAAGCAACTCGCAATCCTGTTGACCGCGACCGCGCTCGCCGCCTGTTCGACCGGCGGCGACAAGCCCAAGGCAGCCGA AGCCCCGCTGCACAGCCGGATGCTCGTGCTCGACACCCATCTTGACACGCCGCTCCATTTCGAGCGCGCGGGGTGGAGCT TTGCCGACCGCCACACCCTCGCCGACGATATGGTCCAGCTCGACATTCCACGAATGAAGGACGGCCATCTCGATGGCGGC TTCTTTGTCATTTACACCGAACAGGGTCCACTGACCGCCAAGGGTTATGCCGACGCCCTCGCCTTTGCGCGGGGGCGTTC GGACCTGATCGACAGCACGCTCGCCAAATATCCCGACGCGATCGCCCCCGCGCGCACGGCGGCCGACGCCAGGAGGCTGA ACAGGGAAGGCAAGCTGATCGCCTTCAAGTCGATGGAAAACAGCTATCCGCTCGGCGAGGATCTGACGCTGCTCGCGGAG TTTTACGCCAGGGGCCTGCGCATGGCGGGGCCGGTCCATTCGCGGACCAACCAGTTCGCCGACAGCGCGACCGGCGAGGC GCGCTGGAAGGGACTGAGCCCGCTCGGCAAGCGTTGGGTCGCCGAAATGAACCGGCTGGGTATCGTCATCGACGCCAGCC ATTCGTCGGATGCGGCGTTCGACCAGATGCTCGAACTGTCGAAATATCCGATCATCCTCTCGCACTCCAGCCTGCGCTCG GCCCATGATCATCCGCGCAACCTCGATGAAGCGCGGCTGAAGGCGCTCGCGGCCAAGGGCGGGGCGATGTGCATTTCAAC GATCTTCCTGTCGGACATGAACATGACCCCGGCACGCGCCGGGCTGTTCGGCCAATATGAGCGGATCGGCGCGATGACCC CGGCCGAGCAGGCCGACCTCAACCGCAAATGGCGCGAGCTCGACCAAAGCGAGCCATTATGGGCCGCCGATTTCGAGGAT TATATGAAGATGGTGCTGCGCGCGATCGCGGTCGCGGGCGCCGATCATATCTGCTTCGGCGCCGACTGGGACGGCGGCGG CGGCCTGAAGGGCATAGAGGACATCACCGCACTGCCCAAGGTCACCGCGCGGCTGAAGGAAGCGGGCTATTCGGACGCCG ACATCGAAAAAATGTGGAGCGGCAACGTGCTGCGCATCTTGGCGGCGCAGGGGAAATAG
Upstream 100 bases:
>100_bases ATGGCGAGATAACCGGCGTGACGATGAAAGCGGTGAGCAAGATTGCCGACTTCAGCTGGGATTATCACGATCTCGACCTG AAGCCCGTGGAGGACAAGAA
Downstream 100 bases:
>100_bases CGCGAGCCGGATTGACGCCCGCCCCATATCATCGTCATCCCGGCCTTCGCTGGGATGACGACACTGACAGGTCGCTCCTT CCGTTGCGATCAGCCTCGAA
Product: peptidase M19, renal dipeptidase
Products: NA
Alternate protein names: ORF R [H]
Number of amino acids: Translated: 392; Mature: 392
Protein sequence:
>392_residues MKQLAILLTATALAACSTGGDKPKAAEAPLHSRMLVLDTHLDTPLHFERAGWSFADRHTLADDMVQLDIPRMKDGHLDGG FFVIYTEQGPLTAKGYADALAFARGRSDLIDSTLAKYPDAIAPARTAADARRLNREGKLIAFKSMENSYPLGEDLTLLAE FYARGLRMAGPVHSRTNQFADSATGEARWKGLSPLGKRWVAEMNRLGIVIDASHSSDAAFDQMLELSKYPIILSHSSLRS AHDHPRNLDEARLKALAAKGGAMCISTIFLSDMNMTPARAGLFGQYERIGAMTPAEQADLNRKWRELDQSEPLWAADFED YMKMVLRAIAVAGADHICFGADWDGGGGLKGIEDITALPKVTARLKEAGYSDADIEKMWSGNVLRILAAQGK
Sequences:
>Translated_392_residues MKQLAILLTATALAACSTGGDKPKAAEAPLHSRMLVLDTHLDTPLHFERAGWSFADRHTLADDMVQLDIPRMKDGHLDGG FFVIYTEQGPLTAKGYADALAFARGRSDLIDSTLAKYPDAIAPARTAADARRLNREGKLIAFKSMENSYPLGEDLTLLAE FYARGLRMAGPVHSRTNQFADSATGEARWKGLSPLGKRWVAEMNRLGIVIDASHSSDAAFDQMLELSKYPIILSHSSLRS AHDHPRNLDEARLKALAAKGGAMCISTIFLSDMNMTPARAGLFGQYERIGAMTPAEQADLNRKWRELDQSEPLWAADFED YMKMVLRAIAVAGADHICFGADWDGGGGLKGIEDITALPKVTARLKEAGYSDADIEKMWSGNVLRILAAQGK >Mature_392_residues MKQLAILLTATALAACSTGGDKPKAAEAPLHSRMLVLDTHLDTPLHFERAGWSFADRHTLADDMVQLDIPRMKDGHLDGG FFVIYTEQGPLTAKGYADALAFARGRSDLIDSTLAKYPDAIAPARTAADARRLNREGKLIAFKSMENSYPLGEDLTLLAE FYARGLRMAGPVHSRTNQFADSATGEARWKGLSPLGKRWVAEMNRLGIVIDASHSSDAAFDQMLELSKYPIILSHSSLRS AHDHPRNLDEARLKALAAKGGAMCISTIFLSDMNMTPARAGLFGQYERIGAMTPAEQADLNRKWRELDQSEPLWAADFED YMKMVLRAIAVAGADHICFGADWDGGGGLKGIEDITALPKVTARLKEAGYSDADIEKMWSGNVLRILAAQGK
Specific function: Unknown
COG id: COG2355
COG function: function code E; Zn-dependent dipeptidase, microsomal dipeptidase homolog
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M19 family [H]
Homologues:
Organism=Homo sapiens, GI189458885, Length=370, Percent_Identity=26.2162162162162, Blast_Score=120, Evalue=1e-27, Organism=Homo sapiens, GI4758190, Length=370, Percent_Identity=26.2162162162162, Blast_Score=120, Evalue=1e-27, Organism=Homo sapiens, GI11641269, Length=387, Percent_Identity=26.8733850129199, Blast_Score=119, Evalue=6e-27, Organism=Homo sapiens, GI193211608, Length=328, Percent_Identity=24.6951219512195, Blast_Score=101, Evalue=1e-21, Organism=Homo sapiens, GI193211610, Length=328, Percent_Identity=24.390243902439, Blast_Score=98, Evalue=2e-20, Organism=Drosophila melanogaster, GI281362638, Length=327, Percent_Identity=27.5229357798165, Blast_Score=114, Evalue=1e-25, Organism=Drosophila melanogaster, GI281362636, Length=327, Percent_Identity=27.5229357798165, Blast_Score=114, Evalue=1e-25, Organism=Drosophila melanogaster, GI221475880, Length=390, Percent_Identity=25.3846153846154, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI161083233, Length=327, Percent_Identity=27.82874617737, Blast_Score=110, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000180 - InterPro: IPR008257 [H]
Pfam domain/function: PF01244 Peptidase_M19 [H]
EC number: NA
Molecular weight: Translated: 42761; Mature: 42761
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQLAILLTATALAACSTGGDKPKAAEAPLHSRMLVLDTHLDTPLHFERAGWSFADRHTL CCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEHHCCCCHHHHHHH ADDMVQLDIPRMKDGHLDGGFFVIYTEQGPLTAKGYADALAFARGRSDLIDSTLAKYPDA HHHHHEECCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCC IAPARTAADARRLNREGKLIAFKSMENSYPLGEDLTLLAEFYARGLRMAGPVHSRTNQFA CCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH DSATGEARWKGLSPLGKRWVAEMNRLGIVIDASHSSDAAFDQMLELSKYPIILSHSSLRS HCCCCCHHCCCCCHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHCCCEEEECCHHHH AHDHPRNLDEARLKALAAKGGAMCISTIFLSDMNMTPARAGLFGQYERIGAMTPAEQADL HCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHH NRKWRELDQSEPLWAADFEDYMKMVLRAIAVAGADHICFGADWDGGGGLKGIEDITALPK HHHHHHCCCCCCCEECCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHH VTARLKEAGYSDADIEKMWSGNVLRILAAQGK HHHHHHHCCCCCCHHHHHHCCCEEEEEECCCC >Mature Secondary Structure MKQLAILLTATALAACSTGGDKPKAAEAPLHSRMLVLDTHLDTPLHFERAGWSFADRHTL CCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEHHCCCCHHHHHHH ADDMVQLDIPRMKDGHLDGGFFVIYTEQGPLTAKGYADALAFARGRSDLIDSTLAKYPDA HHHHHEECCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCC IAPARTAADARRLNREGKLIAFKSMENSYPLGEDLTLLAEFYARGLRMAGPVHSRTNQFA CCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH DSATGEARWKGLSPLGKRWVAEMNRLGIVIDASHSSDAAFDQMLELSKYPIILSHSSLRS HCCCCCHHCCCCCHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHCCCEEEECCHHHH AHDHPRNLDEARLKALAAKGGAMCISTIFLSDMNMTPARAGLFGQYERIGAMTPAEQADL HCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHH NRKWRELDQSEPLWAADFEDYMKMVLRAIAVAGADHICFGADWDGGGGLKGIEDITALPK HHHHHHCCCCCCCEECCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHH VTARLKEAGYSDADIEKMWSGNVLRILAAQGK HHHHHHHCCCCCCHHHHHHCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2536663 [H]