Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103486944

Identifier: 103486944

GI number: 103486944

Start: 1513392

End: 1514570

Strand: Reverse

Name: 103486944

Synonym: Sala_1459

Alternate gene names: NA

Gene position: 1514570-1513392 (Counterclockwise)

Preceding gene: 103486945

Following gene: 103486941

Centisome position: 45.28

GC content: 64.46

Gene sequence:

>1179_bases
GTGAAGCAACTCGCAATCCTGTTGACCGCGACCGCGCTCGCCGCCTGTTCGACCGGCGGCGACAAGCCCAAGGCAGCCGA
AGCCCCGCTGCACAGCCGGATGCTCGTGCTCGACACCCATCTTGACACGCCGCTCCATTTCGAGCGCGCGGGGTGGAGCT
TTGCCGACCGCCACACCCTCGCCGACGATATGGTCCAGCTCGACATTCCACGAATGAAGGACGGCCATCTCGATGGCGGC
TTCTTTGTCATTTACACCGAACAGGGTCCACTGACCGCCAAGGGTTATGCCGACGCCCTCGCCTTTGCGCGGGGGCGTTC
GGACCTGATCGACAGCACGCTCGCCAAATATCCCGACGCGATCGCCCCCGCGCGCACGGCGGCCGACGCCAGGAGGCTGA
ACAGGGAAGGCAAGCTGATCGCCTTCAAGTCGATGGAAAACAGCTATCCGCTCGGCGAGGATCTGACGCTGCTCGCGGAG
TTTTACGCCAGGGGCCTGCGCATGGCGGGGCCGGTCCATTCGCGGACCAACCAGTTCGCCGACAGCGCGACCGGCGAGGC
GCGCTGGAAGGGACTGAGCCCGCTCGGCAAGCGTTGGGTCGCCGAAATGAACCGGCTGGGTATCGTCATCGACGCCAGCC
ATTCGTCGGATGCGGCGTTCGACCAGATGCTCGAACTGTCGAAATATCCGATCATCCTCTCGCACTCCAGCCTGCGCTCG
GCCCATGATCATCCGCGCAACCTCGATGAAGCGCGGCTGAAGGCGCTCGCGGCCAAGGGCGGGGCGATGTGCATTTCAAC
GATCTTCCTGTCGGACATGAACATGACCCCGGCACGCGCCGGGCTGTTCGGCCAATATGAGCGGATCGGCGCGATGACCC
CGGCCGAGCAGGCCGACCTCAACCGCAAATGGCGCGAGCTCGACCAAAGCGAGCCATTATGGGCCGCCGATTTCGAGGAT
TATATGAAGATGGTGCTGCGCGCGATCGCGGTCGCGGGCGCCGATCATATCTGCTTCGGCGCCGACTGGGACGGCGGCGG
CGGCCTGAAGGGCATAGAGGACATCACCGCACTGCCCAAGGTCACCGCGCGGCTGAAGGAAGCGGGCTATTCGGACGCCG
ACATCGAAAAAATGTGGAGCGGCAACGTGCTGCGCATCTTGGCGGCGCAGGGGAAATAG

Upstream 100 bases:

>100_bases
ATGGCGAGATAACCGGCGTGACGATGAAAGCGGTGAGCAAGATTGCCGACTTCAGCTGGGATTATCACGATCTCGACCTG
AAGCCCGTGGAGGACAAGAA

Downstream 100 bases:

>100_bases
CGCGAGCCGGATTGACGCCCGCCCCATATCATCGTCATCCCGGCCTTCGCTGGGATGACGACACTGACAGGTCGCTCCTT
CCGTTGCGATCAGCCTCGAA

Product: peptidase M19, renal dipeptidase

Products: NA

Alternate protein names: ORF R [H]

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MKQLAILLTATALAACSTGGDKPKAAEAPLHSRMLVLDTHLDTPLHFERAGWSFADRHTLADDMVQLDIPRMKDGHLDGG
FFVIYTEQGPLTAKGYADALAFARGRSDLIDSTLAKYPDAIAPARTAADARRLNREGKLIAFKSMENSYPLGEDLTLLAE
FYARGLRMAGPVHSRTNQFADSATGEARWKGLSPLGKRWVAEMNRLGIVIDASHSSDAAFDQMLELSKYPIILSHSSLRS
AHDHPRNLDEARLKALAAKGGAMCISTIFLSDMNMTPARAGLFGQYERIGAMTPAEQADLNRKWRELDQSEPLWAADFED
YMKMVLRAIAVAGADHICFGADWDGGGGLKGIEDITALPKVTARLKEAGYSDADIEKMWSGNVLRILAAQGK

Sequences:

>Translated_392_residues
MKQLAILLTATALAACSTGGDKPKAAEAPLHSRMLVLDTHLDTPLHFERAGWSFADRHTLADDMVQLDIPRMKDGHLDGG
FFVIYTEQGPLTAKGYADALAFARGRSDLIDSTLAKYPDAIAPARTAADARRLNREGKLIAFKSMENSYPLGEDLTLLAE
FYARGLRMAGPVHSRTNQFADSATGEARWKGLSPLGKRWVAEMNRLGIVIDASHSSDAAFDQMLELSKYPIILSHSSLRS
AHDHPRNLDEARLKALAAKGGAMCISTIFLSDMNMTPARAGLFGQYERIGAMTPAEQADLNRKWRELDQSEPLWAADFED
YMKMVLRAIAVAGADHICFGADWDGGGGLKGIEDITALPKVTARLKEAGYSDADIEKMWSGNVLRILAAQGK
>Mature_392_residues
MKQLAILLTATALAACSTGGDKPKAAEAPLHSRMLVLDTHLDTPLHFERAGWSFADRHTLADDMVQLDIPRMKDGHLDGG
FFVIYTEQGPLTAKGYADALAFARGRSDLIDSTLAKYPDAIAPARTAADARRLNREGKLIAFKSMENSYPLGEDLTLLAE
FYARGLRMAGPVHSRTNQFADSATGEARWKGLSPLGKRWVAEMNRLGIVIDASHSSDAAFDQMLELSKYPIILSHSSLRS
AHDHPRNLDEARLKALAAKGGAMCISTIFLSDMNMTPARAGLFGQYERIGAMTPAEQADLNRKWRELDQSEPLWAADFED
YMKMVLRAIAVAGADHICFGADWDGGGGLKGIEDITALPKVTARLKEAGYSDADIEKMWSGNVLRILAAQGK

Specific function: Unknown

COG id: COG2355

COG function: function code E; Zn-dependent dipeptidase, microsomal dipeptidase homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M19 family [H]

Homologues:

Organism=Homo sapiens, GI189458885, Length=370, Percent_Identity=26.2162162162162, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI4758190, Length=370, Percent_Identity=26.2162162162162, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI11641269, Length=387, Percent_Identity=26.8733850129199, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI193211608, Length=328, Percent_Identity=24.6951219512195, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI193211610, Length=328, Percent_Identity=24.390243902439, Blast_Score=98, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281362638, Length=327, Percent_Identity=27.5229357798165, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI281362636, Length=327, Percent_Identity=27.5229357798165, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI221475880, Length=390, Percent_Identity=25.3846153846154, Blast_Score=112, Evalue=3e-25,
Organism=Drosophila melanogaster, GI161083233, Length=327, Percent_Identity=27.82874617737, Blast_Score=110, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000180
- InterPro:   IPR008257 [H]

Pfam domain/function: PF01244 Peptidase_M19 [H]

EC number: NA

Molecular weight: Translated: 42761; Mature: 42761

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLAILLTATALAACSTGGDKPKAAEAPLHSRMLVLDTHLDTPLHFERAGWSFADRHTL
CCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEHHCCCCHHHHHHH
ADDMVQLDIPRMKDGHLDGGFFVIYTEQGPLTAKGYADALAFARGRSDLIDSTLAKYPDA
HHHHHEECCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCC
IAPARTAADARRLNREGKLIAFKSMENSYPLGEDLTLLAEFYARGLRMAGPVHSRTNQFA
CCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
DSATGEARWKGLSPLGKRWVAEMNRLGIVIDASHSSDAAFDQMLELSKYPIILSHSSLRS
HCCCCCHHCCCCCHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHCCCEEEECCHHHH
AHDHPRNLDEARLKALAAKGGAMCISTIFLSDMNMTPARAGLFGQYERIGAMTPAEQADL
HCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
NRKWRELDQSEPLWAADFEDYMKMVLRAIAVAGADHICFGADWDGGGGLKGIEDITALPK
HHHHHHCCCCCCCEECCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHH
VTARLKEAGYSDADIEKMWSGNVLRILAAQGK
HHHHHHHCCCCCCHHHHHHCCCEEEEEECCCC
>Mature Secondary Structure
MKQLAILLTATALAACSTGGDKPKAAEAPLHSRMLVLDTHLDTPLHFERAGWSFADRHTL
CCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEHHCCCCHHHHHHH
ADDMVQLDIPRMKDGHLDGGFFVIYTEQGPLTAKGYADALAFARGRSDLIDSTLAKYPDA
HHHHHEECCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCC
IAPARTAADARRLNREGKLIAFKSMENSYPLGEDLTLLAEFYARGLRMAGPVHSRTNQFA
CCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
DSATGEARWKGLSPLGKRWVAEMNRLGIVIDASHSSDAAFDQMLELSKYPIILSHSSLRS
HCCCCCHHCCCCCHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHCCCEEEECCHHHH
AHDHPRNLDEARLKALAAKGGAMCISTIFLSDMNMTPARAGLFGQYERIGAMTPAEQADL
HCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
NRKWRELDQSEPLWAADFEDYMKMVLRAIAVAGADHICFGADWDGGGGLKGIEDITALPK
HHHHHHCCCCCCCEECCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHH
VTARLKEAGYSDADIEKMWSGNVLRILAAQGK
HHHHHHHCCCCCCHHHHHHCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2536663 [H]