| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yhaZ [H]
Identifier: 103486936
GI number: 103486936
Start: 1500982
End: 1502088
Strand: Direct
Name: yhaZ [H]
Synonym: Sala_1451
Alternate gene names: 103486936
Gene position: 1500982-1502088 (Clockwise)
Preceding gene: 103486935
Following gene: 103486942
Centisome position: 44.87
GC content: 68.02
Gene sequence:
>1107_bases ATGAGCGGCGAAACGCTGCTGCTAAAAAATCTGCTGGGGCCGCAGGCCGTTGCGACGATCGCCGACGCCGGGACTGCCGC GACGCCGCATTTCGACCGCCCGACGTTCGTGCGCGCCGCGTCGGAGGGCCTCGATGCGCTGTCGATCATGGAACGCGTGC GCCATATCGCCGATGCGCTGCACGGCGCGCTGCCAGGCGATTATGGCGCGACGCTCGATGCGCTGCGCGCAATGGCACCG CGACTGACGCACGGCTTTCAGGCGATCGCGATCACCGAAGTGGTGGCACGCCACGGCCTCGACGATTTCGATCGCTCAAT GGCTGCGCTTGCCGATCTGACGCGCTTTGGTTCGGCCGAGTTTGCGATCCGTCCGTTCCTGACCGCCGATCCCGACCGCG CGCTGGCTACGATGGGGCGCTGGACGACGAGCGACGACGAGCATGTGCGCCGCCTTGCGAGCGAGGGCGCGCGGCCGCGG CTGCCGTGGGCGGCGCGTGTCCCCGCGCTGAAGGTCGATCCGACGCGCGCCGCGCCGATCCTCGAGGCGCTGAAGGCCGA CCCTGCCCCCTATGTCCGCAAATCGGTCGCGAACCATCTCAACGATATTGCCAAGGACCGGCCGGGCTGGCTGGTCGAGC GCCTCGCGCACTGGTCGCAGGACGACGAACGCACCGCATGGATCGTCCGCCACGCGCTGCGCACATTGATCAAGAAGGGC GACCCCGCCGCGCTCGCGCTGATCGGCGTCGGCCATGGCGCCGCAGTGACACTGCGCCGCTTTGCTGTCGAACCGGCCAG CGTCCGCCTTGGCGACCGGATCGCCATCACCGTTGCGTTGGCGTCGGAGTCACCCGACGATCAGCCGTTGGTGGTCGACT ACCGCATCCATTATGCCCGCCCCGGCGGCAAGAGTGCGCCGAAGGTGTTCAAGCTCAAGAGCTTCACGCTCGCGGGGCAC GATACCGCCGCGCTGTCGATTTCACAGACGATCCGCGATTTCACGACCCGCCGCCATCATCCAGGGCGGCACCGGGTCGA ACTGATGGTCAATGGCCAGGCGATGGCGGAGGCCGCCTTCGACATCGTTGCCGACGATGGCGCCTAG
Upstream 100 bases:
>100_bases AGACGCTGATCGAACTGCGCCGTGCGCAGGTCGACAATCTGGTGACGCTTTATGTCGCGCTGGGTGGCGGGCTGGTCGAA CGTGCGGGAAGCGCGGCGCG
Downstream 100 bases:
>100_bases AGCGCGATGACCTGATATTGACCCACCGTGACGGAGGCGATTTTGGCCGAGTGCGAGGCGCGAGGAGCGGCGCGATGCGG GACATCGCGCCCGACGAGCA
Product: DNA alkylation repair enzyme-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 368; Mature: 367
Protein sequence:
>368_residues MSGETLLLKNLLGPQAVATIADAGTAATPHFDRPTFVRAASEGLDALSIMERVRHIADALHGALPGDYGATLDALRAMAP RLTHGFQAIAITEVVARHGLDDFDRSMAALADLTRFGSAEFAIRPFLTADPDRALATMGRWTTSDDEHVRRLASEGARPR LPWAARVPALKVDPTRAAPILEALKADPAPYVRKSVANHLNDIAKDRPGWLVERLAHWSQDDERTAWIVRHALRTLIKKG DPAALALIGVGHGAAVTLRRFAVEPASVRLGDRIAITVALASESPDDQPLVVDYRIHYARPGGKSAPKVFKLKSFTLAGH DTAALSISQTIRDFTTRRHHPGRHRVELMVNGQAMAEAAFDIVADDGA
Sequences:
>Translated_368_residues MSGETLLLKNLLGPQAVATIADAGTAATPHFDRPTFVRAASEGLDALSIMERVRHIADALHGALPGDYGATLDALRAMAP RLTHGFQAIAITEVVARHGLDDFDRSMAALADLTRFGSAEFAIRPFLTADPDRALATMGRWTTSDDEHVRRLASEGARPR LPWAARVPALKVDPTRAAPILEALKADPAPYVRKSVANHLNDIAKDRPGWLVERLAHWSQDDERTAWIVRHALRTLIKKG DPAALALIGVGHGAAVTLRRFAVEPASVRLGDRIAITVALASESPDDQPLVVDYRIHYARPGGKSAPKVFKLKSFTLAGH DTAALSISQTIRDFTTRRHHPGRHRVELMVNGQAMAEAAFDIVADDGA >Mature_367_residues SGETLLLKNLLGPQAVATIADAGTAATPHFDRPTFVRAASEGLDALSIMERVRHIADALHGALPGDYGATLDALRAMAPR LTHGFQAIAITEVVARHGLDDFDRSMAALADLTRFGSAEFAIRPFLTADPDRALATMGRWTTSDDEHVRRLASEGARPRL PWAARVPALKVDPTRAAPILEALKADPAPYVRKSVANHLNDIAKDRPGWLVERLAHWSQDDERTAWIVRHALRTLIKKGD PAALALIGVGHGAAVTLRRFAVEPASVRLGDRIAITVALASESPDDQPLVVDYRIHYARPGGKSAPKVFKLKSFTLAGHD TAALSISQTIRDFTTRRHHPGRHRVELMVNGQAMAEAAFDIVADDGA
Specific function: Unknown
COG id: COG4335
COG function: function code L; DNA alkylation repair enzyme
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HEAT repeat [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011989 - InterPro: IPR016024 - InterPro: IPR000357 - InterPro: IPR021133 [H]
Pfam domain/function: PF02985 HEAT [H]
EC number: NA
Molecular weight: Translated: 39799; Mature: 39668
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGETLLLKNLLGPQAVATIADAGTAATPHFDRPTFVRAASEGLDALSIMERVRHIADAL CCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH HGALPGDYGATLDALRAMAPRLTHGFQAIAITEVVARHGLDDFDRSMAALADLTRFGSAE HCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC FAIRPFLTADPDRALATMGRWTTSDDEHVRRLASEGARPRLPWAARVPALKVDPTRAAPI EEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHCCCEEEECCCHHHHH LEALKADPAPYVRKSVANHLNDIAKDRPGWLVERLAHWSQDDERTAWIVRHALRTLIKKG HHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC DPAALALIGVGHGAAVTLRRFAVEPASVRLGDRIAITVALASESPDDQPLVVDYRIHYAR CCCEEEEEECCCCHHHHHHHHHCCCHHEECCCEEEEEEEEECCCCCCCCEEEEEEEEEEC PGGKSAPKVFKLKSFTLAGHDTAALSISQTIRDFTTRRHHPGRHRVELMVNGQAMAEAAF CCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHH DIVADDGA HHEECCCC >Mature Secondary Structure SGETLLLKNLLGPQAVATIADAGTAATPHFDRPTFVRAASEGLDALSIMERVRHIADAL CCCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH HGALPGDYGATLDALRAMAPRLTHGFQAIAITEVVARHGLDDFDRSMAALADLTRFGSAE HCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC FAIRPFLTADPDRALATMGRWTTSDDEHVRRLASEGARPRLPWAARVPALKVDPTRAAPI EEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHCCCEEEECCCHHHHH LEALKADPAPYVRKSVANHLNDIAKDRPGWLVERLAHWSQDDERTAWIVRHALRTLIKKG HHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC DPAALALIGVGHGAAVTLRRFAVEPASVRLGDRIAITVALASESPDDQPLVVDYRIHYAR CCCEEEEEECCCCHHHHHHHHHCCCHHEECCCEEEEEEEEECCCCCCCCEEEEEEEEEEC PGGKSAPKVFKLKSFTLAGHDTAALSISQTIRDFTTRRHHPGRHRVELMVNGQAMAEAAF CCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHH DIVADDGA HHEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]