Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is yhaZ [H]

Identifier: 103486936

GI number: 103486936

Start: 1500982

End: 1502088

Strand: Direct

Name: yhaZ [H]

Synonym: Sala_1451

Alternate gene names: 103486936

Gene position: 1500982-1502088 (Clockwise)

Preceding gene: 103486935

Following gene: 103486942

Centisome position: 44.87

GC content: 68.02

Gene sequence:

>1107_bases
ATGAGCGGCGAAACGCTGCTGCTAAAAAATCTGCTGGGGCCGCAGGCCGTTGCGACGATCGCCGACGCCGGGACTGCCGC
GACGCCGCATTTCGACCGCCCGACGTTCGTGCGCGCCGCGTCGGAGGGCCTCGATGCGCTGTCGATCATGGAACGCGTGC
GCCATATCGCCGATGCGCTGCACGGCGCGCTGCCAGGCGATTATGGCGCGACGCTCGATGCGCTGCGCGCAATGGCACCG
CGACTGACGCACGGCTTTCAGGCGATCGCGATCACCGAAGTGGTGGCACGCCACGGCCTCGACGATTTCGATCGCTCAAT
GGCTGCGCTTGCCGATCTGACGCGCTTTGGTTCGGCCGAGTTTGCGATCCGTCCGTTCCTGACCGCCGATCCCGACCGCG
CGCTGGCTACGATGGGGCGCTGGACGACGAGCGACGACGAGCATGTGCGCCGCCTTGCGAGCGAGGGCGCGCGGCCGCGG
CTGCCGTGGGCGGCGCGTGTCCCCGCGCTGAAGGTCGATCCGACGCGCGCCGCGCCGATCCTCGAGGCGCTGAAGGCCGA
CCCTGCCCCCTATGTCCGCAAATCGGTCGCGAACCATCTCAACGATATTGCCAAGGACCGGCCGGGCTGGCTGGTCGAGC
GCCTCGCGCACTGGTCGCAGGACGACGAACGCACCGCATGGATCGTCCGCCACGCGCTGCGCACATTGATCAAGAAGGGC
GACCCCGCCGCGCTCGCGCTGATCGGCGTCGGCCATGGCGCCGCAGTGACACTGCGCCGCTTTGCTGTCGAACCGGCCAG
CGTCCGCCTTGGCGACCGGATCGCCATCACCGTTGCGTTGGCGTCGGAGTCACCCGACGATCAGCCGTTGGTGGTCGACT
ACCGCATCCATTATGCCCGCCCCGGCGGCAAGAGTGCGCCGAAGGTGTTCAAGCTCAAGAGCTTCACGCTCGCGGGGCAC
GATACCGCCGCGCTGTCGATTTCACAGACGATCCGCGATTTCACGACCCGCCGCCATCATCCAGGGCGGCACCGGGTCGA
ACTGATGGTCAATGGCCAGGCGATGGCGGAGGCCGCCTTCGACATCGTTGCCGACGATGGCGCCTAG

Upstream 100 bases:

>100_bases
AGACGCTGATCGAACTGCGCCGTGCGCAGGTCGACAATCTGGTGACGCTTTATGTCGCGCTGGGTGGCGGGCTGGTCGAA
CGTGCGGGAAGCGCGGCGCG

Downstream 100 bases:

>100_bases
AGCGCGATGACCTGATATTGACCCACCGTGACGGAGGCGATTTTGGCCGAGTGCGAGGCGCGAGGAGCGGCGCGATGCGG
GACATCGCGCCCGACGAGCA

Product: DNA alkylation repair enzyme-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MSGETLLLKNLLGPQAVATIADAGTAATPHFDRPTFVRAASEGLDALSIMERVRHIADALHGALPGDYGATLDALRAMAP
RLTHGFQAIAITEVVARHGLDDFDRSMAALADLTRFGSAEFAIRPFLTADPDRALATMGRWTTSDDEHVRRLASEGARPR
LPWAARVPALKVDPTRAAPILEALKADPAPYVRKSVANHLNDIAKDRPGWLVERLAHWSQDDERTAWIVRHALRTLIKKG
DPAALALIGVGHGAAVTLRRFAVEPASVRLGDRIAITVALASESPDDQPLVVDYRIHYARPGGKSAPKVFKLKSFTLAGH
DTAALSISQTIRDFTTRRHHPGRHRVELMVNGQAMAEAAFDIVADDGA

Sequences:

>Translated_368_residues
MSGETLLLKNLLGPQAVATIADAGTAATPHFDRPTFVRAASEGLDALSIMERVRHIADALHGALPGDYGATLDALRAMAP
RLTHGFQAIAITEVVARHGLDDFDRSMAALADLTRFGSAEFAIRPFLTADPDRALATMGRWTTSDDEHVRRLASEGARPR
LPWAARVPALKVDPTRAAPILEALKADPAPYVRKSVANHLNDIAKDRPGWLVERLAHWSQDDERTAWIVRHALRTLIKKG
DPAALALIGVGHGAAVTLRRFAVEPASVRLGDRIAITVALASESPDDQPLVVDYRIHYARPGGKSAPKVFKLKSFTLAGH
DTAALSISQTIRDFTTRRHHPGRHRVELMVNGQAMAEAAFDIVADDGA
>Mature_367_residues
SGETLLLKNLLGPQAVATIADAGTAATPHFDRPTFVRAASEGLDALSIMERVRHIADALHGALPGDYGATLDALRAMAPR
LTHGFQAIAITEVVARHGLDDFDRSMAALADLTRFGSAEFAIRPFLTADPDRALATMGRWTTSDDEHVRRLASEGARPRL
PWAARVPALKVDPTRAAPILEALKADPAPYVRKSVANHLNDIAKDRPGWLVERLAHWSQDDERTAWIVRHALRTLIKKGD
PAALALIGVGHGAAVTLRRFAVEPASVRLGDRIAITVALASESPDDQPLVVDYRIHYARPGGKSAPKVFKLKSFTLAGHD
TAALSISQTIRDFTTRRHHPGRHRVELMVNGQAMAEAAFDIVADDGA

Specific function: Unknown

COG id: COG4335

COG function: function code L; DNA alkylation repair enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HEAT repeat [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR000357
- InterPro:   IPR021133 [H]

Pfam domain/function: PF02985 HEAT [H]

EC number: NA

Molecular weight: Translated: 39799; Mature: 39668

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGETLLLKNLLGPQAVATIADAGTAATPHFDRPTFVRAASEGLDALSIMERVRHIADAL
CCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
HGALPGDYGATLDALRAMAPRLTHGFQAIAITEVVARHGLDDFDRSMAALADLTRFGSAE
HCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
FAIRPFLTADPDRALATMGRWTTSDDEHVRRLASEGARPRLPWAARVPALKVDPTRAAPI
EEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHCCCEEEECCCHHHHH
LEALKADPAPYVRKSVANHLNDIAKDRPGWLVERLAHWSQDDERTAWIVRHALRTLIKKG
HHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
DPAALALIGVGHGAAVTLRRFAVEPASVRLGDRIAITVALASESPDDQPLVVDYRIHYAR
CCCEEEEEECCCCHHHHHHHHHCCCHHEECCCEEEEEEEEECCCCCCCCEEEEEEEEEEC
PGGKSAPKVFKLKSFTLAGHDTAALSISQTIRDFTTRRHHPGRHRVELMVNGQAMAEAAF
CCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHH
DIVADDGA
HHEECCCC
>Mature Secondary Structure 
SGETLLLKNLLGPQAVATIADAGTAATPHFDRPTFVRAASEGLDALSIMERVRHIADAL
CCCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
HGALPGDYGATLDALRAMAPRLTHGFQAIAITEVVARHGLDDFDRSMAALADLTRFGSAE
HCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
FAIRPFLTADPDRALATMGRWTTSDDEHVRRLASEGARPRLPWAARVPALKVDPTRAAPI
EEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHCCCEEEECCCHHHHH
LEALKADPAPYVRKSVANHLNDIAKDRPGWLVERLAHWSQDDERTAWIVRHALRTLIKKG
HHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
DPAALALIGVGHGAAVTLRRFAVEPASVRLGDRIAITVALASESPDDQPLVVDYRIHYAR
CCCEEEEEECCCCHHHHHHHHHCCCHHEECCCEEEEEEEEECCCCCCCCEEEEEEEEEEC
PGGKSAPKVFKLKSFTLAGHDTAALSISQTIRDFTTRRHHPGRHRVELMVNGQAMAEAAF
CCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHH
DIVADDGA
HHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]