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The map label for this gene is srpC [H]

Identifier: 103486935

GI number: 103486935

Start: 1499570

End: 1500985

Strand: Direct

Name: srpC [H]

Synonym: Sala_1450

Alternate gene names: 103486935

Gene position: 1499570-1500985 (Clockwise)

Preceding gene: 103486934

Following gene: 103486936

Centisome position: 44.83

GC content: 69.84

Gene sequence:

>1416_bases
ATGCGTAAGGCGATCCTGCTTCTCATCGCAACGACGCTCGCCGGATGCGTCGACATGGCGCCTCCGCACGAGCGGCCACC
GCTGGCGACCGCCGCCGACTATCCCGCCGAGTTCGCGGGCGGCGCGACGCCGGGGCAGCGCGCGACCGACATCGCGTGGC
GCGACTTCTTCGCCGACCCGCGGCTCGAAATGCTGATCGCGCAGGCGATCGCGCATAATCGCGACCTTGCCGTCGCCGTG
GCGCAGATCGAGGAGGCGCGCGGCCTCTATCGCATCCAGGCGGCCGACCGCCTGCCGACGGTCGGCGCCAGCGCCGATGC
AGCGCGGACGCGCGGCCCGTCGGTGACGGGCGTAGGCACCGACACGACGAGCCGCTATTCGGTCGGCGTTGGCGTCACCT
CGTTCGAGCTCGATTTCTGGGGGCGGGTCAGGAATCTCTCCGAAGCGGCGCGCAGCCAATATCTTGCGACCGAGGCGGCC
GAGCGCACTTTTCGCCTCGCGCTTGTGCGCGATGTCGCCTCGACCTATTTCGCTTCGCGCGGCGCCGAGGAGCAGATCCA
GCTTGCCGAAGCGACGGTGGCGAGCCGCAAGGAGGGACTGCGCATCGCCCGGCGCCGCCTCGATGCCGGGGTCACATCGG
CCCTCGACTATCGCCAGTCGGAAACGCTGCTGACGCAAGCCGAAACGCAGCTCGCGAGCCTGAAGCTCGGCAAGGCGCAG
GCCGACAATTTCCTCGCCGTGCTCACTGGCGGCCCGGTTAGCGAGCCTCTGCTCGCGCCGCTTCCGCTCGTCGCGCAGGC
GGGGGCACCCGCGCTGACCGCGGGGCTGCCGTCCGACCTGCTCGTCGCGCGCCCCGACATTGTCGCGACCGAGGAACGGC
TGCGCGCCGCGCGCGCCAATGTCGGCGCGGCGCGTGCCGCCTTTTTCCCGTCGATCTCGCTCACCGGCAGTTTCGGTTTC
GCCTCAGGCGCGCTCGACGACCTGTTCGGCGACGATGGCATGACATGGACTTTCGGCCCGTCGATCAGCCTGCCGATCTT
CGACTTCGGTCGGCGGCAAGGCAATCTGACGGTCGCCGAGGCGCGCGAGGACATCGCCGTCGCGGCCTATGAACGCACCG
TGCAGGGCGCGTTCCGCGAGGTCGCCGACGCGCTCGCCGGGCGGCGTTATCTGGCCGAACAGGTCGAAGCGCAGGAGCGC
GGCACGCTGGCGACGCGGCAGATCGCCGACCTGGCGCGCAAGCGCTATCGCGAGGGGGTGTCGACCTATCTCGAAGTGCT
CGACGCCGAACGCAACCTGTTTGCCGCCGAACAGACGCTGATCGAACTGCGCCGTGCGCAGGTCGACAATCTGGTGACGC
TTTATGTCGCGCTGGGTGGCGGGCTGGTCGAACGTGCGGGAAGCGCGGCGCGATGA

Upstream 100 bases:

>100_bases
ATCTTCTTCATCCCGCTGTTCTACCTGTCGGTGCGCAAATGGCTGAGCCGCAAACGCCCCCCCGCCCCCACCGAGAAAGG
CCACCATGAGGAGCCCGGTC

Downstream 100 bases:

>100_bases
GCGGCGAAACGCTGCTGCTAAAAAATCTGCTGGGGCCGCAGGCCGTTGCGACGATCGCCGACGCCGGGACTGCCGCGACG
CCGCATTTCGACCGCCCGAC

Product: RND efflux system, outer membrane lipoprotein, NodT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
MRKAILLLIATTLAGCVDMAPPHERPPLATAADYPAEFAGGATPGQRATDIAWRDFFADPRLEMLIAQAIAHNRDLAVAV
AQIEEARGLYRIQAADRLPTVGASADAARTRGPSVTGVGTDTTSRYSVGVGVTSFELDFWGRVRNLSEAARSQYLATEAA
ERTFRLALVRDVASTYFASRGAEEQIQLAEATVASRKEGLRIARRRLDAGVTSALDYRQSETLLTQAETQLASLKLGKAQ
ADNFLAVLTGGPVSEPLLAPLPLVAQAGAPALTAGLPSDLLVARPDIVATEERLRAARANVGAARAAFFPSISLTGSFGF
ASGALDDLFGDDGMTWTFGPSISLPIFDFGRRQGNLTVAEAREDIAVAAYERTVQGAFREVADALAGRRYLAEQVEAQER
GTLATRQIADLARKRYREGVSTYLEVLDAERNLFAAEQTLIELRRAQVDNLVTLYVALGGGLVERAGSAAR

Sequences:

>Translated_471_residues
MRKAILLLIATTLAGCVDMAPPHERPPLATAADYPAEFAGGATPGQRATDIAWRDFFADPRLEMLIAQAIAHNRDLAVAV
AQIEEARGLYRIQAADRLPTVGASADAARTRGPSVTGVGTDTTSRYSVGVGVTSFELDFWGRVRNLSEAARSQYLATEAA
ERTFRLALVRDVASTYFASRGAEEQIQLAEATVASRKEGLRIARRRLDAGVTSALDYRQSETLLTQAETQLASLKLGKAQ
ADNFLAVLTGGPVSEPLLAPLPLVAQAGAPALTAGLPSDLLVARPDIVATEERLRAARANVGAARAAFFPSISLTGSFGF
ASGALDDLFGDDGMTWTFGPSISLPIFDFGRRQGNLTVAEAREDIAVAAYERTVQGAFREVADALAGRRYLAEQVEAQER
GTLATRQIADLARKRYREGVSTYLEVLDAERNLFAAEQTLIELRRAQVDNLVTLYVALGGGLVERAGSAAR
>Mature_471_residues
MRKAILLLIATTLAGCVDMAPPHERPPLATAADYPAEFAGGATPGQRATDIAWRDFFADPRLEMLIAQAIAHNRDLAVAV
AQIEEARGLYRIQAADRLPTVGASADAARTRGPSVTGVGTDTTSRYSVGVGVTSFELDFWGRVRNLSEAARSQYLATEAA
ERTFRLALVRDVASTYFASRGAEEQIQLAEATVASRKEGLRIARRRLDAGVTSALDYRQSETLLTQAETQLASLKLGKAQ
ADNFLAVLTGGPVSEPLLAPLPLVAQAGAPALTAGLPSDLLVARPDIVATEERLRAARANVGAARAAFFPSISLTGSFGF
ASGALDDLFGDDGMTWTFGPSISLPIFDFGRRQGNLTVAEAREDIAVAAYERTVQGAFREVADALAGRRYLAEQVEAQER
GTLATRQIADLARKRYREGVSTYLEVLDAERNLFAAEQTLIELRRAQVDNLVTLYVALGGGLVERAGSAAR

Specific function: The outer membrane component of an organic solvent efflux pump. Involved in export of a number of low log POW compounds including hexane (log POW 3.5), toluene (log POW 2.5) and dimethylphthalate (log POW 2.3). The solvent resistance phenotype has been po

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=468, Percent_Identity=39.7435897435897, Blast_Score=318, Evalue=5e-88,
Organism=Escherichia coli, GI2367348, Length=469, Percent_Identity=25.7995735607676, Blast_Score=110, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 50351; Mature: 50351

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKAILLLIATTLAGCVDMAPPHERPPLATAADYPAEFAGGATPGQRATDIAWRDFFADP
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHCCCC
RLEMLIAQAIAHNRDLAVAVAQIEEARGLYRIQAADRLPTVGASADAARTRGPSVTGVGT
HHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEHHCCCCCCCCCCCHHHCCCCCEEECCC
DTTSRYSVGVGVTSFELDFWGRVRNLSEAARSQYLATEAAERTFRLALVRDVASTYFASR
CCCCCEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GAEEQIQLAEATVASRKEGLRIARRRLDAGVTSALDYRQSETLLTQAETQLASLKLGKAQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ADNFLAVLTGGPVSEPLLAPLPLVAQAGAPALTAGLPSDLLVARPDIVATEERLRAARAN
CCCEEEEEECCCCCCCCCCCCCHHHHCCCCCEECCCCCCCEEECCCCHHHHHHHHHHHHC
VGAARAAFFPSISLTGSFGFASGALDDLFGDDGMTWTFGPSISLPIFDFGRRQGNLTVAE
CCHHHHHHCCCEEEECCCCCCCCCHHHHCCCCCCEEEECCCCCCCHHHCCCCCCCEEHHH
AREDIAVAAYERTVQGAFREVADALAGRRYLAEQVEAQERGTLATRQIADLARKRYREGV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
STYLEVLDAERNLFAAEQTLIELRRAQVDNLVTLYVALGGGLVERAGSAAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCC
>Mature Secondary Structure
MRKAILLLIATTLAGCVDMAPPHERPPLATAADYPAEFAGGATPGQRATDIAWRDFFADP
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHCCCC
RLEMLIAQAIAHNRDLAVAVAQIEEARGLYRIQAADRLPTVGASADAARTRGPSVTGVGT
HHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEHHCCCCCCCCCCCHHHCCCCCEEECCC
DTTSRYSVGVGVTSFELDFWGRVRNLSEAARSQYLATEAAERTFRLALVRDVASTYFASR
CCCCCEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GAEEQIQLAEATVASRKEGLRIARRRLDAGVTSALDYRQSETLLTQAETQLASLKLGKAQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ADNFLAVLTGGPVSEPLLAPLPLVAQAGAPALTAGLPSDLLVARPDIVATEERLRAARAN
CCCEEEEEECCCCCCCCCCCCCHHHHCCCCCEECCCCCCCEEECCCCHHHHHHHHHHHHC
VGAARAAFFPSISLTGSFGFASGALDDLFGDDGMTWTFGPSISLPIFDFGRRQGNLTVAE
CCHHHHHHCCCEEEECCCCCCCCCHHHHCCCCCCEEEECCCCCCCHHHCCCCCCCEEHHH
AREDIAVAAYERTVQGAFREVADALAGRRYLAEQVEAQERGTLATRQIADLARKRYREGV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
STYLEVLDAERNLFAAEQTLIELRRAQVDNLVTLYVALGGGLVERAGSAAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9417051; 9852029 [H]