Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103486931

Identifier: 103486931

GI number: 103486931

Start: 1493113

End: 1494459

Strand: Reverse

Name: 103486931

Synonym: Sala_1446

Alternate gene names: NA

Gene position: 1494459-1493113 (Counterclockwise)

Preceding gene: 103486932

Following gene: 103486930

Centisome position: 44.68

GC content: 67.41

Gene sequence:

>1347_bases
GTGGCCAGTTCCGCCCTGCCATCGGCTATATCCGCGCCTCGCCTGTTGGCGCTGCGGCCGCGGGTCGTGGCGGCCTATGC
CGCGACCGCGGGGCCGACGGCGATGCTCGCGCTGCCTTTCAGCGTCTATCTGCCGCCCTATATCGCCGAAGGCGGGGTGA
TTCCGGTGGCGCTGGTCGGGCTGCTCTTTTCGCTCACGACGATCTGGGACGGGGTGGTCGACCCGCTGATCGGAACGATG
GTGGACCGCGTTCGCACCGGGCTTGGCGCGCACCGCCGCTGGATGCTGATCGCGCTGGCGCCGCTCGGCTTGCTGCTGCT
CGCGCTGGTCATGGTAGGCGACCGCCTGTCGTTCGCGGCGCTGTTCCTGATGATGGTGCTCTTCTACTCCAGCTTCAGCC
TGTACGAGGTTGCCCAGCTGTCGTGGGGGTCGGCGCTCGTGCGCACTCCCGCCGACAGCGCACTGCTCTACGGAATGCGC
GACTGGTTCGCGAAGATCGCGCTGATCCTGGCCTTTGCCGCGCCCGCAGCGGCACAATTGCTGATGCCGTCGATCAGCCT
GCAGGGACGGATCATCGCCTATGCAAGCCTCTTCCTGCTTCTGGCGCCCGTCGCGATTTATGCGATCGCGCGTGTCCCGC
GGCGCCGCGTCGTCGCCGAGGCGGGGATCGGCTGGCGCCGGGAAATCCGCGCCTCGTTCGGCTTTCCGCCGCTGATGCTG
CTCTTTGGCGTGCAGTTCCTCAACAGTTTTGCGTTCGGATCGCTCACCTCGCTTTTCGTCTTTTTTGCCGATGCCGTGCT
GGGACTCGACGCGCAGAGCGCGGTGCTCCTGTTTGCCAGCTTTGTCGGCGGCGCGCTCGCGTCGCCGGTCTGGACTTTTC
TCGCGCGGCGCTTCGGCAAGCCACCCATGATGATCGGCATGGCGTTGCTGATCTCGACGCTGCTCGTCGCCACGCTGGGG
CAGACGCCGCGTGGGCTTGCGCAGGCGACACTTTTTTCGTTGACGCTCGGGACGGGCTTCGTCGGGCTGTTGTTCATCCA
CTCGATGCTGGCCGACCTGATCCCGCGCGACGCCGAGCGCTGCGGCCGGTCGCGCGCGGCCTTTCTGTTCGCGCTCCTGA
ACCTGATGCAGAAGTTCGGCGTCGCGGCGGCGATCGCCGTCAGCTATGCGATGCTCGACCTTGTCGGTTTCGATCCGCGG
GACGGCGCTGTGGCGGCGCGCGCGCTGCATCTCCTCTTCGCGCTCCAGCCGACCGCCAGCTGGGCGGCGATGGTGGTCCT
GCTCCTGCTGATGCGCCGCGACTTCGCCCGCGACCATCCGCTTGCAATCGCCGCAGCGCGCAAGTAA

Upstream 100 bases:

>100_bases
CGACCGTTCATATCGCATTTCAGGATCGGCCAGATTCATTGACATAATTGTCAATAGCTGAAAGCATCGCGCTTCGTGCC
TTCCTGGGGAGCGACGCGAC

Downstream 100 bases:

>100_bases
AGGCCGCATTCATTCGGACAGATGCGCCGTTTTCCTTCCGCCTTTCGCCGACAAGCTCGGGGAGGGTGGACGGACTATTG
CCCGAAGCGCGCTTGACGCG

Product: Na+/melibiose symporter and related transporters-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 447

Protein sequence:

>448_residues
MASSALPSAISAPRLLALRPRVVAAYAATAGPTAMLALPFSVYLPPYIAEGGVIPVALVGLLFSLTTIWDGVVDPLIGTM
VDRVRTGLGAHRRWMLIALAPLGLLLLALVMVGDRLSFAALFLMMVLFYSSFSLYEVAQLSWGSALVRTPADSALLYGMR
DWFAKIALILAFAAPAAAQLLMPSISLQGRIIAYASLFLLLAPVAIYAIARVPRRRVVAEAGIGWRREIRASFGFPPLML
LFGVQFLNSFAFGSLTSLFVFFADAVLGLDAQSAVLLFASFVGGALASPVWTFLARRFGKPPMMIGMALLISTLLVATLG
QTPRGLAQATLFSLTLGTGFVGLLFIHSMLADLIPRDAERCGRSRAAFLFALLNLMQKFGVAAAIAVSYAMLDLVGFDPR
DGAVAARALHLLFALQPTASWAAMVVLLLLMRRDFARDHPLAIAAARK

Sequences:

>Translated_448_residues
MASSALPSAISAPRLLALRPRVVAAYAATAGPTAMLALPFSVYLPPYIAEGGVIPVALVGLLFSLTTIWDGVVDPLIGTM
VDRVRTGLGAHRRWMLIALAPLGLLLLALVMVGDRLSFAALFLMMVLFYSSFSLYEVAQLSWGSALVRTPADSALLYGMR
DWFAKIALILAFAAPAAAQLLMPSISLQGRIIAYASLFLLLAPVAIYAIARVPRRRVVAEAGIGWRREIRASFGFPPLML
LFGVQFLNSFAFGSLTSLFVFFADAVLGLDAQSAVLLFASFVGGALASPVWTFLARRFGKPPMMIGMALLISTLLVATLG
QTPRGLAQATLFSLTLGTGFVGLLFIHSMLADLIPRDAERCGRSRAAFLFALLNLMQKFGVAAAIAVSYAMLDLVGFDPR
DGAVAARALHLLFALQPTASWAAMVVLLLLMRRDFARDHPLAIAAARK
>Mature_447_residues
ASSALPSAISAPRLLALRPRVVAAYAATAGPTAMLALPFSVYLPPYIAEGGVIPVALVGLLFSLTTIWDGVVDPLIGTMV
DRVRTGLGAHRRWMLIALAPLGLLLLALVMVGDRLSFAALFLMMVLFYSSFSLYEVAQLSWGSALVRTPADSALLYGMRD
WFAKIALILAFAAPAAAQLLMPSISLQGRIIAYASLFLLLAPVAIYAIARVPRRRVVAEAGIGWRREIRASFGFPPLMLL
FGVQFLNSFAFGSLTSLFVFFADAVLGLDAQSAVLLFASFVGGALASPVWTFLARRFGKPPMMIGMALLISTLLVATLGQ
TPRGLAQATLFSLTLGTGFVGLLFIHSMLADLIPRDAERCGRSRAAFLFALLNLMQKFGVAAAIAVSYAMLDLVGFDPRD
GAVAARALHLLFALQPTASWAAMVVLLLLMRRDFARDHPLAIAAARK

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47931; Mature: 47800

Theoretical pI: Translated: 11.25; Mature: 11.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSALPSAISAPRLLALRPRVVAAYAATAGPTAMLALPFSVYLPPYIAEGGVIPVALVG
CCCCCCCCHHCCCHHHHCCCHHHHHHHHCCCCHHHHHCCHHHHCCCHHCCCCCHHHHHHH
LLFSLTTIWDGVVDPLIGTMVDRVRTGLGAHRRWMLIALAPLGLLLLALVMVGDRLSFAA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LFLMMVLFYSSFSLYEVAQLSWGSALVRTPADSALLYGMRDWFAKIALILAFAAPAAAQL
HHHHHHHHHCCCCHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMPSISLQGRIIAYASLFLLLAPVAIYAIARVPRRRVVAEAGIGWRREIRASFGFPPLML
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHCCCCHHHH
LFGVQFLNSFAFGSLTSLFVFFADAVLGLDAQSAVLLFASFVGGALASPVWTFLARRFGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PPMMIGMALLISTLLVATLGQTPRGLAQATLFSLTLGTGFVGLLFIHSMLADLIPRDAER
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
CGRSRAAFLFALLNLMQKFGVAAAIAVSYAMLDLVGFDPRDGAVAARALHLLFALQPTAS
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHH
WAAMVVLLLLMRRDFARDHPLAIAAARK
HHHHHHHHHHHHHHHCCCCCEEEEECCC
>Mature Secondary Structure 
ASSALPSAISAPRLLALRPRVVAAYAATAGPTAMLALPFSVYLPPYIAEGGVIPVALVG
CCCCCCCHHCCCHHHHCCCHHHHHHHHCCCCHHHHHCCHHHHCCCHHCCCCCHHHHHHH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HHHHHHHHHHHHHHHCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA