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The map label for this gene is ycbB [H]

Identifier: 103486925

GI number: 103486925

Start: 1488552

End: 1489781

Strand: Direct

Name: ycbB [H]

Synonym: Sala_1440

Alternate gene names: 103486925

Gene position: 1488552-1489781 (Clockwise)

Preceding gene: 103486924

Following gene: 103486933

Centisome position: 44.5

GC content: 65.53

Gene sequence:

>1230_bases
GTGACCGACGATGCGCCGGTCGTCGCGGCGCAGTTCGAAATGCCGGGCTGGTCGGAAGAAAATGCGACTGCGCTTCTTGG
CTTTATCGAAAAGGTCGGCGACGAGGGCCTGTTCGCGCGGGATTACAACCCCGATGCGCTCGCTGCGGCGATCCTGGCGA
ACGATCAGGCCAAGCTCGACACGCTGGCGACCGACACCTTCCTGCTGCTCGCGACGCACCTGCGCGACGGGCGCACACCC
AACGCCGCACGCAAACAATGGTTCATGACTGACAGCGATGGCGAGAACGAACCCCTGCTCGCCCTGCTGACCGCCGCGCT
CGGCGCGGGCACGGTCGCCGAAACGCTGGCGAGCCTGAACCCGGTCCATCCCGATTTCGCGGTGCTCAGGGCGGCGCTCA
AACGCGCGAAGACGGCGGCCGACGCACAGGCGATCCGCGTCAACATGGAACGCTGGCGCTGGATGCCGCGCGACCTTGGC
GAACGCTATGTCGTCAGCAATGTTCCCGAATATCTGACGCGTGTCGTCCATGGCGGCACCGTCATCGCAACGCACAAGGC
GGTGGTCGGCAAGAAATCGACTCCGACGCCGCAGCTCAATCCGATGGCAACCGGGATCATCGTCAACCCGAACTGGACGC
TGCCGCGCAGCATCATCAACGAAGGCATCGGCGCGACGATCGCGCGTAATCCGGCCGCTGCGCGCGCGCAGGGCTATACC
TGGACGGGCAGTGGCAAGACCTTGTCGGTGGTACAGAAGCCCGGCCCGAACAATGCGCTGGGCGTCATGAAGATGGAGAT
GCTGAACGAACACGCCATCTATCTGCACGATACGCCGTCGAAGAATGCGTTCAACGCCGCGGCGCGCGCCTTCAGCCACG
GCTGCATCCGCACCGAACGCGCGCTGCACTTCTCGGGTCTGATGGCGGTGATGTTCGCCGGGCGTAGCCCCGAGGAGTTC
GGCGAAGCGATCGCCAGCGGCAAGACGACGCGATTCGGCTTCGATCAGCCCTTCCCCGTCTATGTCGCCTACTGGACCGT
CGTGCCCGACGGCAAGGGTGGCGTGAAAAAGCTCGCCGACCTTTACGAGCGCGATGCGCCCGTCGTCGCAAGTTTTGCCA
GGCCTGGTCGCCCGGCCGCAACAATCATCGCGCCGGTGCCGCCGCCGGTCGTCCCGACGGTCGATACGGCGGCGCGCGTC
ACGACGCCGGGGACCAGCGGGATTTATTGA

Upstream 100 bases:

>100_bases
TCCCGCCGCGGCTCTCCTCCTCCCGCTGGGCCTGCTCGCGGCCCCTGCCCTCGCACAAACCGACGTGAAGGAGGATTCGG
TCATCCTCCAGCCCGACAAG

Downstream 100 bases:

>100_bases
ACGTCGGCAGGTTTCGGCTGAAAGCGGAAACAGAAAGGGCCGGAGTTTCCCCCGGCCCTTCCTGAAACGTTGCGGTGCCG
ATCAGGCGCCGGTGAGTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MTDDAPVVAAQFEMPGWSEENATALLGFIEKVGDEGLFARDYNPDALAAAILANDQAKLDTLATDTFLLLATHLRDGRTP
NAARKQWFMTDSDGENEPLLALLTAALGAGTVAETLASLNPVHPDFAVLRAALKRAKTAADAQAIRVNMERWRWMPRDLG
ERYVVSNVPEYLTRVVHGGTVIATHKAVVGKKSTPTPQLNPMATGIIVNPNWTLPRSIINEGIGATIARNPAAARAQGYT
WTGSGKTLSVVQKPGPNNALGVMKMEMLNEHAIYLHDTPSKNAFNAAARAFSHGCIRTERALHFSGLMAVMFAGRSPEEF
GEAIASGKTTRFGFDQPFPVYVAYWTVVPDGKGGVKKLADLYERDAPVVASFARPGRPAATIIAPVPPPVVPTVDTAARV
TTPGTSGIY

Sequences:

>Translated_409_residues
MTDDAPVVAAQFEMPGWSEENATALLGFIEKVGDEGLFARDYNPDALAAAILANDQAKLDTLATDTFLLLATHLRDGRTP
NAARKQWFMTDSDGENEPLLALLTAALGAGTVAETLASLNPVHPDFAVLRAALKRAKTAADAQAIRVNMERWRWMPRDLG
ERYVVSNVPEYLTRVVHGGTVIATHKAVVGKKSTPTPQLNPMATGIIVNPNWTLPRSIINEGIGATIARNPAAARAQGYT
WTGSGKTLSVVQKPGPNNALGVMKMEMLNEHAIYLHDTPSKNAFNAAARAFSHGCIRTERALHFSGLMAVMFAGRSPEEF
GEAIASGKTTRFGFDQPFPVYVAYWTVVPDGKGGVKKLADLYERDAPVVASFARPGRPAATIIAPVPPPVVPTVDTAARV
TTPGTSGIY
>Mature_408_residues
TDDAPVVAAQFEMPGWSEENATALLGFIEKVGDEGLFARDYNPDALAAAILANDQAKLDTLATDTFLLLATHLRDGRTPN
AARKQWFMTDSDGENEPLLALLTAALGAGTVAETLASLNPVHPDFAVLRAALKRAKTAADAQAIRVNMERWRWMPRDLGE
RYVVSNVPEYLTRVVHGGTVIATHKAVVGKKSTPTPQLNPMATGIIVNPNWTLPRSIINEGIGATIARNPAAARAQGYTW
TGSGKTLSVVQKPGPNNALGVMKMEMLNEHAIYLHDTPSKNAFNAAARAFSHGCIRTERALHFSGLMAVMFAGRSPEEFG
EAIASGKTTRFGFDQPFPVYVAYWTVVPDGKGGVKKLADLYERDAPVVASFARPGRPAATIIAPVPPPVVPTVDTAARVT
TPGTSGIY

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=253, Percent_Identity=28.0632411067194, Blast_Score=117, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 43794; Mature: 43663

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDDAPVVAAQFEMPGWSEENATALLGFIEKVGDEGLFARDYNPDALAAAILANDQAKLD
CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHCCCHHHH
TLATDTFLLLATHLRDGRTPNAARKQWFMTDSDGENEPLLALLTAALGAGTVAETLASLN
HHHHHHHHHHHHHHCCCCCCCHHHHEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHCC
PVHPDFAVLRAALKRAKTAADAQAIRVNMERWRWMPRDLGERYVVSNVPEYLTRVVHGGT
CCCCCHHHHHHHHHHHHHHHCHHHHEEEHHHHCCCCHHHCCHHHHHHHHHHHHHHHCCCE
VIATHKAVVGKKSTPTPQLNPMATGIIVNPNWTLPRSIINEGIGATIARNPAAARAQGYT
EEEECHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCCEEECCCCHHHCCCEE
WTGSGKTLSVVQKPGPNNALGVMKMEMLNEHAIYLHDTPSKNAFNAAARAFSHGCIRTER
EECCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCHHHHHH
ALHFSGLMAVMFAGRSPEEFGEAIASGKTTRFGFDQPFPVYVAYWTVVPDGKGGVKKLAD
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCEECCCCCCCCEEEEEEEEEECCCCHHHHHHH
LYERDAPVVASFARPGRPAATIIAPVPPPVVPTVDTAARVTTPGTSGIY
HHHCCCCCEEHHCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCC
>Mature Secondary Structure 
TDDAPVVAAQFEMPGWSEENATALLGFIEKVGDEGLFARDYNPDALAAAILANDQAKLD
CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHCCCHHHH
TLATDTFLLLATHLRDGRTPNAARKQWFMTDSDGENEPLLALLTAALGAGTVAETLASLN
HHHHHHHHHHHHHHCCCCCCCHHHHEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHCC
PVHPDFAVLRAALKRAKTAADAQAIRVNMERWRWMPRDLGERYVVSNVPEYLTRVVHGGT
CCCCCHHHHHHHHHHHHHHHCHHHHEEEHHHHCCCCHHHCCHHHHHHHHHHHHHHHCCCE
VIATHKAVVGKKSTPTPQLNPMATGIIVNPNWTLPRSIINEGIGATIARNPAAARAQGYT
EEEECHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCCEEECCCCHHHCCCEE
WTGSGKTLSVVQKPGPNNALGVMKMEMLNEHAIYLHDTPSKNAFNAAARAFSHGCIRTER
EECCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCHHHHHH
ALHFSGLMAVMFAGRSPEEFGEAIASGKTTRFGFDQPFPVYVAYWTVVPDGKGGVKKLAD
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCEECCCCCCCCEEEEEEEEEECCCCHHHHHHH
LYERDAPVVASFARPGRPAATIIAPVPPPVVPTVDTAARVTTPGTSGIY
HHHCCCCCEEHHCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]