| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is accC [H]
Identifier: 103486924
GI number: 103486924
Start: 1486896
End: 1488260
Strand: Direct
Name: accC [H]
Synonym: Sala_1439
Alternate gene names: 103486924
Gene position: 1486896-1488260 (Clockwise)
Preceding gene: 103486923
Following gene: 103486925
Centisome position: 44.45
GC content: 63.3
Gene sequence:
>1365_bases ATGACCATCGAAAAACTGCTCATCGCCAACCGCGGCGAGATTGCGCTGCGTATCCACCGCGCGTGCCACGAAATGGGCAT CAGGACGGTTGCGGTCCACTCGACCGCCGACACCGACGCGATGCACGTCCGTCTCGCCGACGAGGCGGTGTGCATCGGCC CGCCCGCGGCGAAGGACAGCTATCTCAATATCCCCGCCATCATCTCGGCGGCCGAGATCACCGGCGCCGACGCGATCCAT CCGGGCTATGGCTTCCTCTCCGAAAACGAGCGCTTCGCCGAGATCATCGAAGCGCATGACATGATCTTCGTCGGGCCGAA GCCCGAACATATCCGGACGATGGGCGACAAGGTCGAGGCAAAGCGCACCGCGGTCGCGCTGGGTCTTCCCGTCGTTCCGG GCTCGCCCGGCGCGGTGACGTTCGGCGAGGAAACGAAAAAGCTCGCGCGCGAGATCGGCTATCCGGTGCTGATCAAGGCG GCGTCGGGCGGCGGCGGGCGCGGCATGAAGGTGGTGCCCGACGAGGACAGCCTCGAAAGCCTGATGGGTCAGGCGTCGAG CGAAGCGGCGGCGGCATTCGGCGATCCCACCGTTTACATGGAAAAATATCTCGGCAACCCGCGCCACATCGAGTTTCAGG TGTTCGGCGACGGCAAGGGTAATGCGATCCATCTGGGCGAGCGCGACTGTTCGCTCCAGCGCCGCCACCAGAAGGTGCTT GAAGAAGCGCCGTCGCCGATCATTTCGGCCGAGGAACGCGCGCGCATGGGCAAGGTCTGCGCCGATGCGATGGCCACAAT GGGCTATCGCGGCGCTGGCACGATCGAGTTCCTGTGGGAAAATGGTGAGTTCTTCTTCATCGAAATGAACACGCGCATCC AGGTCGAGCATCCGGTGACCGAGATGATCACCGGCTTCGACCTTGTGCGCGAACAGATTCGCATCGCGGGCGGCGCCGGG CTTTCGGTGAAACAGGAAGAGCTGGAGTTTCGCGGCCATGCGATCGAATGCCGCATCAATGCGGAGGATCCGCGCACCTT CATGCCCTCACCGGGCAAGGTGACCGCCTATCATCCGGCAGGCGGGATGCACGTCCGCGTCGATAGCGGGCTTTACGCCG GCTATTCGATCCCGCCCTATTACGACAGCATGATCGGCAAGCTGATCGTCTATGGCCGCAGCCGCGAAAGCTGCATGATG CGGATGCGCCGCGCGCTCGAGGAAATGGTGATCGCGGGCGTCAAGACGAACATCCCGCTCCACCAGGCGCTGCTCGCCGA CCCCGACGTCATCAACGGCGATTATACGATCAAATGGCTGGAGGAATGGCTGGCGAAGCAGGATGCGGAGGAAAGCGCGG CATAA
Upstream 100 bases:
>100_bases GATCACCGCGCCCGCCGCGGGCACGCTCAAGGCCGTGCATGTCGAAAACAGCCAGCCGGTCGAGTTCGACCAGCCGCTGT TCACCATCGGGTAAGTACCC
Downstream 100 bases:
>100_bases AGGCAATGCGTCACCCCGGCGAAGGCCGGGGAGTCAAGGCGCCTTACAATCCGGCGCGGAGATTCCGGCCTTCGCAGGAA TGACGAAGCCGCTTTTAATC
Product: acetyl-CoA carboxylase, biotin carboxylase
Products: NA
Alternate protein names: Acetyl-CoA carboxylase subunit A; ACC [H]
Number of amino acids: Translated: 454; Mature: 453
Protein sequence:
>454_residues MTIEKLLIANRGEIALRIHRACHEMGIRTVAVHSTADTDAMHVRLADEAVCIGPPAAKDSYLNIPAIISAAEITGADAIH PGYGFLSENERFAEIIEAHDMIFVGPKPEHIRTMGDKVEAKRTAVALGLPVVPGSPGAVTFGEETKKLAREIGYPVLIKA ASGGGGRGMKVVPDEDSLESLMGQASSEAAAAFGDPTVYMEKYLGNPRHIEFQVFGDGKGNAIHLGERDCSLQRRHQKVL EEAPSPIISAEERARMGKVCADAMATMGYRGAGTIEFLWENGEFFFIEMNTRIQVEHPVTEMITGFDLVREQIRIAGGAG LSVKQEELEFRGHAIECRINAEDPRTFMPSPGKVTAYHPAGGMHVRVDSGLYAGYSIPPYYDSMIGKLIVYGRSRESCMM RMRRALEEMVIAGVKTNIPLHQALLADPDVINGDYTIKWLEEWLAKQDAEESAA
Sequences:
>Translated_454_residues MTIEKLLIANRGEIALRIHRACHEMGIRTVAVHSTADTDAMHVRLADEAVCIGPPAAKDSYLNIPAIISAAEITGADAIH PGYGFLSENERFAEIIEAHDMIFVGPKPEHIRTMGDKVEAKRTAVALGLPVVPGSPGAVTFGEETKKLAREIGYPVLIKA ASGGGGRGMKVVPDEDSLESLMGQASSEAAAAFGDPTVYMEKYLGNPRHIEFQVFGDGKGNAIHLGERDCSLQRRHQKVL EEAPSPIISAEERARMGKVCADAMATMGYRGAGTIEFLWENGEFFFIEMNTRIQVEHPVTEMITGFDLVREQIRIAGGAG LSVKQEELEFRGHAIECRINAEDPRTFMPSPGKVTAYHPAGGMHVRVDSGLYAGYSIPPYYDSMIGKLIVYGRSRESCMM RMRRALEEMVIAGVKTNIPLHQALLADPDVINGDYTIKWLEEWLAKQDAEESAA >Mature_453_residues TIEKLLIANRGEIALRIHRACHEMGIRTVAVHSTADTDAMHVRLADEAVCIGPPAAKDSYLNIPAIISAAEITGADAIHP GYGFLSENERFAEIIEAHDMIFVGPKPEHIRTMGDKVEAKRTAVALGLPVVPGSPGAVTFGEETKKLAREIGYPVLIKAA SGGGGRGMKVVPDEDSLESLMGQASSEAAAAFGDPTVYMEKYLGNPRHIEFQVFGDGKGNAIHLGERDCSLQRRHQKVLE EAPSPIISAEERARMGKVCADAMATMGYRGAGTIEFLWENGEFFFIEMNTRIQVEHPVTEMITGFDLVREQIRIAGGAGL SVKQEELEFRGHAIECRINAEDPRTFMPSPGKVTAYHPAGGMHVRVDSGLYAGYSIPPYYDSMIGKLIVYGRSRESCMMR MRRALEEMVIAGVKTNIPLHQALLADPDVINGDYTIKWLEEWLAKQDAEESAA
Specific function: This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA [H]
COG id: COG0439
COG function: function code I; Biotin carboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 biotin carboxylation domain [H]
Homologues:
Organism=Homo sapiens, GI189095269, Length=445, Percent_Identity=49.2134831460674, Blast_Score=425, Evalue=1e-119, Organism=Homo sapiens, GI65506442, Length=445, Percent_Identity=49.2134831460674, Blast_Score=425, Evalue=1e-119, Organism=Homo sapiens, GI295821183, Length=445, Percent_Identity=49.2134831460674, Blast_Score=424, Evalue=1e-119, Organism=Homo sapiens, GI116805327, Length=436, Percent_Identity=46.7889908256881, Blast_Score=400, Evalue=1e-111, Organism=Homo sapiens, GI106049528, Length=447, Percent_Identity=45.413870246085, Blast_Score=378, Evalue=1e-105, Organism=Homo sapiens, GI106049295, Length=447, Percent_Identity=45.413870246085, Blast_Score=378, Evalue=1e-105, Organism=Homo sapiens, GI106049292, Length=447, Percent_Identity=45.413870246085, Blast_Score=378, Evalue=1e-105, Organism=Homo sapiens, GI38679977, Length=509, Percent_Identity=30.8447937131631, Blast_Score=218, Evalue=8e-57, Organism=Homo sapiens, GI38679967, Length=509, Percent_Identity=30.8447937131631, Blast_Score=218, Evalue=8e-57, Organism=Homo sapiens, GI38679960, Length=509, Percent_Identity=30.8447937131631, Blast_Score=218, Evalue=9e-57, Organism=Homo sapiens, GI38679974, Length=509, Percent_Identity=30.8447937131631, Blast_Score=218, Evalue=1e-56, Organism=Homo sapiens, GI38679971, Length=515, Percent_Identity=30.4854368932039, Blast_Score=218, Evalue=1e-56, Organism=Homo sapiens, GI134142062, Length=508, Percent_Identity=30.9055118110236, Blast_Score=215, Evalue=8e-56, Organism=Escherichia coli, GI1789654, Length=447, Percent_Identity=61.2975391498881, Blast_Score=541, Evalue=1e-155, Organism=Escherichia coli, GI1786216, Length=244, Percent_Identity=23.7704918032787, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17567343, Length=444, Percent_Identity=45.945945945946, Blast_Score=388, Evalue=1e-108, Organism=Caenorhabditis elegans, GI71987519, Length=438, Percent_Identity=46.1187214611872, Blast_Score=379, Evalue=1e-105, Organism=Caenorhabditis elegans, GI17562816, Length=452, Percent_Identity=44.0265486725664, Blast_Score=358, Evalue=3e-99, Organism=Caenorhabditis elegans, GI133931226, Length=497, Percent_Identity=28.7726358148893, Blast_Score=205, Evalue=5e-53, Organism=Caenorhabditis elegans, GI71997168, Length=510, Percent_Identity=28.0392156862745, Blast_Score=193, Evalue=2e-49, Organism=Caenorhabditis elegans, GI71997163, Length=510, Percent_Identity=28.0392156862745, Blast_Score=192, Evalue=2e-49, Organism=Saccharomyces cerevisiae, GI6319695, Length=455, Percent_Identity=45.4945054945055, Blast_Score=357, Evalue=2e-99, Organism=Saccharomyces cerevisiae, GI6321376, Length=448, Percent_Identity=46.2053571428571, Blast_Score=343, Evalue=4e-95, Organism=Saccharomyces cerevisiae, GI6319685, Length=428, Percent_Identity=42.2897196261682, Blast_Score=340, Evalue=3e-94, Organism=Saccharomyces cerevisiae, GI6324343, Length=521, Percent_Identity=30.5182341650672, Blast_Score=228, Evalue=1e-60, Organism=Saccharomyces cerevisiae, GI6323863, Length=471, Percent_Identity=31.4225053078556, Blast_Score=225, Evalue=1e-59, Organism=Drosophila melanogaster, GI24652212, Length=449, Percent_Identity=46.5478841870824, Blast_Score=377, Evalue=1e-105, Organism=Drosophila melanogaster, GI24652210, Length=449, Percent_Identity=46.5478841870824, Blast_Score=377, Evalue=1e-105, Organism=Drosophila melanogaster, GI24652214, Length=449, Percent_Identity=46.5478841870824, Blast_Score=377, Evalue=1e-105, Organism=Drosophila melanogaster, GI19921944, Length=449, Percent_Identity=46.5478841870824, Blast_Score=377, Evalue=1e-105, Organism=Drosophila melanogaster, GI24652216, Length=449, Percent_Identity=46.5478841870824, Blast_Score=377, Evalue=1e-105, Organism=Drosophila melanogaster, GI281363050, Length=449, Percent_Identity=46.5478841870824, Blast_Score=377, Evalue=1e-105, Organism=Drosophila melanogaster, GI24652224, Length=449, Percent_Identity=46.5478841870824, Blast_Score=377, Evalue=1e-105, Organism=Drosophila melanogaster, GI24652222, Length=449, Percent_Identity=46.5478841870824, Blast_Score=377, Evalue=1e-105, Organism=Drosophila melanogaster, GI24652220, Length=449, Percent_Identity=46.5478841870824, Blast_Score=377, Evalue=1e-105, Organism=Drosophila melanogaster, GI24652218, Length=449, Percent_Identity=46.5478841870824, Blast_Score=377, Evalue=1e-105, Organism=Drosophila melanogaster, GI24651757, Length=431, Percent_Identity=45.4756380510441, Blast_Score=375, Evalue=1e-104, Organism=Drosophila melanogaster, GI24651759, Length=393, Percent_Identity=44.7837150127226, Blast_Score=335, Evalue=3e-92, Organism=Drosophila melanogaster, GI161076409, Length=506, Percent_Identity=30.0395256916996, Blast_Score=210, Evalue=2e-54, Organism=Drosophila melanogaster, GI161076407, Length=507, Percent_Identity=29.9802761341223, Blast_Score=210, Evalue=2e-54, Organism=Drosophila melanogaster, GI24586460, Length=507, Percent_Identity=29.9802761341223, Blast_Score=210, Evalue=2e-54, Organism=Drosophila melanogaster, GI24586458, Length=506, Percent_Identity=30.0395256916996, Blast_Score=209, Evalue=2e-54,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004549 - InterPro: IPR011761 - InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR011764 - InterPro: IPR005482 - InterPro: IPR005479 - InterPro: IPR005481 - InterPro: IPR013817 - InterPro: IPR016185 - InterPro: IPR011054 [H]
Pfam domain/function: PF02785 Biotin_carb_C; PF00289 CPSase_L_chain; PF02786 CPSase_L_D2 [H]
EC number: =6.3.4.14; =6.4.1.2 [H]
Molecular weight: Translated: 49591; Mature: 49460
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: PS50975 ATP_GRASP ; PS00866 CPSASE_1 ; PS00867 CPSASE_2 ; PS50979 BC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIEKLLIANRGEIALRIHRACHEMGIRTVAVHSTADTDAMHVRLADEAVCIGPPAAKDS CCHHHEEECCCCCEEEHHHHHHHHCCCEEEEEECCCCCCEEEEEEECCEEEECCCCCCCC YLNIPAIISAAEITGADAIHPGYGFLSENERFAEIIEAHDMIFVGPKPEHIRTMGDKVEA CCCCHHHEEEHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEECCCCHHHHHHHHHHHH KRTAVALGLPVVPGSPGAVTFGEETKKLAREIGYPVLIKAASGGGGRGMKVVPDEDSLES HHEEEEECCCCCCCCCCEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCEECCCCHHHHH LMGQASSEAAAAFGDPTVYMEKYLGNPRHIEFQVFGDGKGNAIHLGERDCSLQRRHQKVL HHCCCCCCHHHHCCCCHHHHHHHCCCCCEEEEEEEECCCCCEEEECCCCHHHHHHHHHHH EEAPSPIISAEERARMGKVCADAMATMGYRGAGTIEFLWENGEFFFIEMNTRIQVEHPVT HHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEECCEEEECCCHH EMITGFDLVREQIRIAGGAGLSVKQEELEFRGHAIECRINAEDPRTFMPSPGKVTAYHPA HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECCC GGMHVRVDSGLYAGYSIPPYYDSMIGKLIVYGRSRESCMMRMRRALEEMVIAGVKTNIPL CCEEEEECCCEEECCCCCHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCH HQALLADPDVINGDYTIKWLEEWLAKQDAEESAA HHHHHCCCCEECCCEEHHHHHHHHHHCCCHHCCC >Mature Secondary Structure TIEKLLIANRGEIALRIHRACHEMGIRTVAVHSTADTDAMHVRLADEAVCIGPPAAKDS CHHHEEECCCCCEEEHHHHHHHHCCCEEEEEECCCCCCEEEEEEECCEEEECCCCCCCC YLNIPAIISAAEITGADAIHPGYGFLSENERFAEIIEAHDMIFVGPKPEHIRTMGDKVEA CCCCHHHEEEHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEECCCCHHHHHHHHHHHH KRTAVALGLPVVPGSPGAVTFGEETKKLAREIGYPVLIKAASGGGGRGMKVVPDEDSLES HHEEEEECCCCCCCCCCEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCEECCCCHHHHH LMGQASSEAAAAFGDPTVYMEKYLGNPRHIEFQVFGDGKGNAIHLGERDCSLQRRHQKVL HHCCCCCCHHHHCCCCHHHHHHHCCCCCEEEEEEEECCCCCEEEECCCCHHHHHHHHHHH EEAPSPIISAEERARMGKVCADAMATMGYRGAGTIEFLWENGEFFFIEMNTRIQVEHPVT HHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEECCEEEECCCHH EMITGFDLVREQIRIAGGAGLSVKQEELEFRGHAIECRINAEDPRTFMPSPGKVTAYHPA HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECCC GGMHVRVDSGLYAGYSIPPYYDSMIGKLIVYGRSRESCMMRMRRALEEMVIAGVKTNIPL CCEEEEECCCEEECCCCCHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCH HQALLADPDVINGDYTIKWLEEWLAKQDAEESAA HHHHHCCCCEECCCEEHHHHHHHHHHCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7693652; 10984043 [H]