| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is gluP [H]
Identifier: 103486881
GI number: 103486881
Start: 1450243
End: 1451538
Strand: Reverse
Name: gluP [H]
Synonym: Sala_1395
Alternate gene names: 103486881
Gene position: 1451538-1450243 (Counterclockwise)
Preceding gene: 103486882
Following gene: 103486878
Centisome position: 43.39
GC content: 64.27
Gene sequence:
>1296_bases ATGGCTTTGGCGCCGGATATTTCTTCGAGCACCGACCCGGTCGCGATTGAAGCGGAGGGCGCGCACGTCGATGCGCCCGA ACTGCGGCTGTTTGTGATGGGTCTGTTCTTCATCTTCGGGGGCATCACGTCGCTCAACGATGTGCTGATCCCGAAGCTGA AGGAATTGTTCACGCTCAACTACACCCAGGCGATGCTGATCCAGTTCTGCTTCTTCACCGCCTATCTGGTGATCGGCATT CCGGGGGCAAAGCTGGTCAAGAAGATCGGCTATATGCGCGGCGCCGTGGCAGGGCTCTTGACGATGCTCGCCGGCTGCCT GCTCTTCATCCCCGCGTCGCAGCAGGCGGTGTACGGCCTGTTCCTGCTTGCGCTCTTCGTACTCGCGAGCGGCGTCGTGA TCGTCCAGGTCGTCGCCAACCCGCTCATCTCGCTGCTCGGCAAGCCTGAAACGGCGCATAGCCGCCTGACCTTTGCGCAG GCGTTCAATTCGCTGGGAACGACCATTTTTCCGATCGTCGGGTCGATACTGATCCTCGGCAGCCTCGCGACGGTCAGCGC CGATCAATTGTCGGGTGCCGAACTCGATGCCTATCGCACCGCCGAAAGCCAGGCGATCGTCCACGGCTATCTGGGCATCG CCGCCGCGCTCGCGGTCGTCGCGGGCGCGGTTTGGCTGTTCCGAAACCGGCTGCAAGGCGAGAAGCATGAGGCGAGCGCG GGCCTCGCGGGCTTGGATTTGCTCAAGCGTCCGCGCTTCGGCTTCGGCGCGCTCTGCATCTTCCTCTATGTCGGCGCCGA GGTGTCGATCGGCTCGCTCGTCGTCAATTATCTGATGCAGCCCGGCGTGATGGCGCTGGAGGAGCAGGCCGCGGGCAAGC TGATCGGGCTTTACTGGGGCGGGGCGATGGTCGGCCGGTTTATCGGGTCCTATCTGATGCGCTTCGTCAGCCCTGGCCGG CTGCTTGCCTGCGTCGCGATCGGCGCGATCACACTGATCCTGATTTCGACCAACACGACCGGCATCGCCGCGGGCTACAG CCTGCTCGCGATCGGCCTGATGAACGCGATCATGTTCCCGACGATCTTCAGCCTCGCTTCGGAGAAGCTGGGCCCTCGCG CAGCCGACGGGTCGGGGATCATCAATGTCGCGATTTTCGGCGGTGCGGTCGTTCCGCTCGCCACCGGGGCGATCGCCGAC ATGACCGGCAGCCTCGCAACCGCGCTGCTGCTCCCCGCGCTGTGCTATGCCGTGATCGCCGCCTTCGGCTATTACGCGCG GCGCCCGGCCGTCTGA
Upstream 100 bases:
>100_bases ACGAATGTCGCGGCGGGAAGCGTCAATTGCGCTTGCTCGTCGCCGCCAATATGACAAACCCCCAACAGGGCACGGCCCGG ACAAATAAATGGGGGATGGT
Downstream 100 bases:
>100_bases AGCCAGGGCCGCGGGCAACCGGCGATTAGGCCCGTTGCCCGCGGCTCCCGCCCCCTCGCGGGAAGCCAGGGTTCAGGCCG GATCGGCGATGCGGATGCAA
Product: glucose/galactose transporter
Products: Proton [Cytoplasm]; L-fucose [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 431; Mature: 430
Protein sequence:
>431_residues MALAPDISSSTDPVAIEAEGAHVDAPELRLFVMGLFFIFGGITSLNDVLIPKLKELFTLNYTQAMLIQFCFFTAYLVIGI PGAKLVKKIGYMRGAVAGLLTMLAGCLLFIPASQQAVYGLFLLALFVLASGVVIVQVVANPLISLLGKPETAHSRLTFAQ AFNSLGTTIFPIVGSILILGSLATVSADQLSGAELDAYRTAESQAIVHGYLGIAAALAVVAGAVWLFRNRLQGEKHEASA GLAGLDLLKRPRFGFGALCIFLYVGAEVSIGSLVVNYLMQPGVMALEEQAAGKLIGLYWGGAMVGRFIGSYLMRFVSPGR LLACVAIGAITLILISTNTTGIAAGYSLLAIGLMNAIMFPTIFSLASEKLGPRAADGSGIINVAIFGGAVVPLATGAIAD MTGSLATALLLPALCYAVIAAFGYYARRPAV
Sequences:
>Translated_431_residues MALAPDISSSTDPVAIEAEGAHVDAPELRLFVMGLFFIFGGITSLNDVLIPKLKELFTLNYTQAMLIQFCFFTAYLVIGI PGAKLVKKIGYMRGAVAGLLTMLAGCLLFIPASQQAVYGLFLLALFVLASGVVIVQVVANPLISLLGKPETAHSRLTFAQ AFNSLGTTIFPIVGSILILGSLATVSADQLSGAELDAYRTAESQAIVHGYLGIAAALAVVAGAVWLFRNRLQGEKHEASA GLAGLDLLKRPRFGFGALCIFLYVGAEVSIGSLVVNYLMQPGVMALEEQAAGKLIGLYWGGAMVGRFIGSYLMRFVSPGR LLACVAIGAITLILISTNTTGIAAGYSLLAIGLMNAIMFPTIFSLASEKLGPRAADGSGIINVAIFGGAVVPLATGAIAD MTGSLATALLLPALCYAVIAAFGYYARRPAV >Mature_430_residues ALAPDISSSTDPVAIEAEGAHVDAPELRLFVMGLFFIFGGITSLNDVLIPKLKELFTLNYTQAMLIQFCFFTAYLVIGIP GAKLVKKIGYMRGAVAGLLTMLAGCLLFIPASQQAVYGLFLLALFVLASGVVIVQVVANPLISLLGKPETAHSRLTFAQA FNSLGTTIFPIVGSILILGSLATVSADQLSGAELDAYRTAESQAIVHGYLGIAAALAVVAGAVWLFRNRLQGEKHEASAG LAGLDLLKRPRFGFGALCIFLYVGAEVSIGSLVVNYLMQPGVMALEEQAAGKLIGLYWGGAMVGRFIGSYLMRFVSPGRL LACVAIGAITLILISTNTTGIAAGYSLLAIGLMNAIMFPTIFSLASEKLGPRAADGSGIINVAIFGGAVVPLATGAIADM TGSLATALLLPALCYAVIAAFGYYARRPAV
Specific function: Intake of glucose and galactose (Potential) [H]
COG id: COG0738
COG function: function code G; Fucose permease
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. FHS transporter (TC 2.A.1.7) family [H]
Homologues:
Organism=Escherichia coli, GI1789166, Length=429, Percent_Identity=34.4988344988345, Blast_Score=203, Evalue=2e-53,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005964 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 44907; Mature: 44776
Theoretical pI: Translated: 8.18; Mature: 8.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALAPDISSSTDPVAIEAEGAHVDAPELRLFVMGLFFIFGGITSLNDVLIPKLKELFTLN CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC YTQAMLIQFCFFTAYLVIGIPGAKLVKKIGYMRGAVAGLLTMLAGCLLFIPASQQAVYGL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH FLLALFVLASGVVIVQVVANPLISLLGKPETAHSRLTFAQAFNSLGTTIFPIVGSILILG HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH SLATVSADQLSGAELDAYRTAESQAIVHGYLGIAAALAVVAGAVWLFRNRLQGEKHEASA HHHHCCHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC GLAGLDLLKRPRFGFGALCIFLYVGAEVSIGSLVVNYLMQPGVMALEEQAAGKLIGLYWG CHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHCCCEEEEHHH GAMVGRFIGSYLMRFVSPGRLLACVAIGAITLILISTNTTGIAAGYSLLAIGLMNAIMFP HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHH TIFSLASEKLGPRAADGSGIINVAIFGGAVVPLATGAIADMTGSLATALLLPALCYAVIA HHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH AFGYYARRPAV HHHHHHCCCCC >Mature Secondary Structure ALAPDISSSTDPVAIEAEGAHVDAPELRLFVMGLFFIFGGITSLNDVLIPKLKELFTLN CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC YTQAMLIQFCFFTAYLVIGIPGAKLVKKIGYMRGAVAGLLTMLAGCLLFIPASQQAVYGL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH FLLALFVLASGVVIVQVVANPLISLLGKPETAHSRLTFAQAFNSLGTTIFPIVGSILILG HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH SLATVSADQLSGAELDAYRTAESQAIVHGYLGIAAALAVVAGAVWLFRNRLQGEKHEASA HHHHCCHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC GLAGLDLLKRPRFGFGALCIFLYVGAEVSIGSLVVNYLMQPGVMALEEQAAGKLIGLYWG CHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHCCCEEEEHHH GAMVGRFIGSYLMRFVSPGRLLACVAIGAITLILISTNTTGIAAGYSLLAIGLMNAIMFP HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHH TIFSLASEKLGPRAADGSGIINVAIFGGAVVPLATGAIADMTGSLATALLLPALCYAVIA HHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH AFGYYARRPAV HHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; L-fucose [Periplasm] [C]
Specific reaction: Proton [Periplasm] + L-fucose [Periplasm] = Proton [Cytoplasm] + L-fucose [Cytoplasm] [C]
General reaction: Permease [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9168605 [H]