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The map label for this gene is cph2 [H]

Identifier: 103486880

GI number: 103486880

Start: 1449079

End: 1450170

Strand: Direct

Name: cph2 [H]

Synonym: Sala_1394

Alternate gene names: 103486880

Gene position: 1449079-1450170 (Clockwise)

Preceding gene: 103486879

Following gene: 103486892

Centisome position: 43.32

GC content: 65.66

Gene sequence:

>1092_bases
ATGGGTTGGCTGGGGCTCCGCCGCGCGCGCGGGACTGCCTCCGATGGCGGATATCCGCCCCCCGACCCTGGAGGCCCGCG
CGACCTGGCGCGCGAGGCACGCTATGAACTCGCCGCATCGATCACCTCTTTCCTCGTCGACAACGACCTCGAAGTCTCGC
CGACGAACCTGCTCATCGCGCACGGTGCCTTTTCGGGATGCAACCCCCGGCTCGCGCAGTTGATCGTCGCGCGCGCGCAA
AGTCCGCAGGGCATCACCCAGAAATGGCTCGACGAACTGGAAGAACAGGAAAGCGGACAGCCCGACCGCGCTGAACTCGA
CAAGCTGATGACGCGGCTCGAGGCGAACCTCGACGCCTTTCATGCCAATACGAAGCAAGCGCGTTCCGCCACGAGCGATT
ACGGGGTCGAGCTCGAACAACATGTCTCCGACCTCGAACAGCTTCAGAAAACGGGCCGCATCGTCTCCAGCCTCGCCGAC
CTCGCCAAGGTCATGCTCGAACGCACGCGCAAGGCCGAAGAGGATATGCGCAAGAGCGAGGATGAGGCGAAAGCGCTGCG
CCGCAGTCTCGACCGCGCCAGGCGCGACGCCGAACTCGACTATCTGACCGGCCTGCCCAACCGCCGCGCATTCGAAAATC
TGCTCGACCGGCATTACAGGGAAGCGCGCGCCGCGCTCGAGCCGCTGAGCGTCGCCTTCTGCGACATCGACGAGTTCAAG
AAGGTCAACGACACGCACGGCCATGACGCCGGCGACCGCGTCATCAAGGCGATCGCCGATACGCTCGCGCGCATCTCCGA
CGACAAATGCCACGTTGCCCGCCATGGCGGCGAGGAGTTCGTGATGCTGTTCCGCGGCCTGACGCCGACCGAGGCCGCGC
AAAAGCTCGACGATGCACGCGAGGCACTCGCCGACCGGCGGCTTATCAACCGCAAGACCGACGAGCCCTTCGGTCAGATC
ACCTTTTCGGGCGGCGTGGCCGATGTCTTCGGCTATGGCGATGCGCGCGCCGCGCTGAAGGCCGCCGACGCGGCGCTTTA
CAAGGCCAAGACGAGCGGCCGCAATTGCATCCGCATCGCCGATCCGGCCTGA

Upstream 100 bases:

>100_bases
CCGAATCGGCGCGGATCACTCTTAAAACCGGCCGCCGATGCTCGTTAAAGCTCGCATGACCACCAAAGCGACGACATCGA
ACGAGCCGGTAGGGCGGCTC

Downstream 100 bases:

>100_bases
ACCCTGGCTTCCCGCGAGGGGGCGGGAGCCGCGGGCAACGGGCCTAATCGCCGGTTGCCCGCGGCCCTGGCTTCAGACGG
CCGGGCGCCGCGCGTAATAG

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MGWLGLRRARGTASDGGYPPPDPGGPRDLAREARYELAASITSFLVDNDLEVSPTNLLIAHGAFSGCNPRLAQLIVARAQ
SPQGITQKWLDELEEQESGQPDRAELDKLMTRLEANLDAFHANTKQARSATSDYGVELEQHVSDLEQLQKTGRIVSSLAD
LAKVMLERTRKAEEDMRKSEDEAKALRRSLDRARRDAELDYLTGLPNRRAFENLLDRHYREARAALEPLSVAFCDIDEFK
KVNDTHGHDAGDRVIKAIADTLARISDDKCHVARHGGEEFVMLFRGLTPTEAAQKLDDAREALADRRLINRKTDEPFGQI
TFSGGVADVFGYGDARAALKAADAALYKAKTSGRNCIRIADPA

Sequences:

>Translated_363_residues
MGWLGLRRARGTASDGGYPPPDPGGPRDLAREARYELAASITSFLVDNDLEVSPTNLLIAHGAFSGCNPRLAQLIVARAQ
SPQGITQKWLDELEEQESGQPDRAELDKLMTRLEANLDAFHANTKQARSATSDYGVELEQHVSDLEQLQKTGRIVSSLAD
LAKVMLERTRKAEEDMRKSEDEAKALRRSLDRARRDAELDYLTGLPNRRAFENLLDRHYREARAALEPLSVAFCDIDEFK
KVNDTHGHDAGDRVIKAIADTLARISDDKCHVARHGGEEFVMLFRGLTPTEAAQKLDDAREALADRRLINRKTDEPFGQI
TFSGGVADVFGYGDARAALKAADAALYKAKTSGRNCIRIADPA
>Mature_362_residues
GWLGLRRARGTASDGGYPPPDPGGPRDLAREARYELAASITSFLVDNDLEVSPTNLLIAHGAFSGCNPRLAQLIVARAQS
PQGITQKWLDELEEQESGQPDRAELDKLMTRLEANLDAFHANTKQARSATSDYGVELEQHVSDLEQLQKTGRIVSSLADL
AKVMLERTRKAEEDMRKSEDEAKALRRSLDRARRDAELDYLTGLPNRRAFENLLDRHYREARAALEPLSVAFCDIDEFKK
VNDTHGHDAGDRVIKAIADTLARISDDKCHVARHGGEEFVMLFRGLTPTEAAQKLDDAREALADRRLINRKTDEPFGQIT
FSGGVADVFGYGDARAALKAADAALYKAKTSGRNCIRIADPA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=36.5269461077844, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI145693134, Length=186, Percent_Identity=28.494623655914, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787541, Length=181, Percent_Identity=33.1491712707182, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786584, Length=163, Percent_Identity=36.8098159509202, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081881, Length=174, Percent_Identity=35.632183908046, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787262, Length=180, Percent_Identity=36.6666666666667, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787802, Length=174, Percent_Identity=29.3103448275862, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081977, Length=171, Percent_Identity=30.9941520467836, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI87082007, Length=190, Percent_Identity=31.5789473684211, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788085, Length=178, Percent_Identity=31.4606741573034, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788381, Length=183, Percent_Identity=28.4153005464481, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788956, Length=181, Percent_Identity=30.3867403314917, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 40095; Mature: 39964

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGWLGLRRARGTASDGGYPPPDPGGPRDLAREARYELAASITSFLVDNDLEVSPTNLLIA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
HGAFSGCNPRLAQLIVARAQSPQGITQKWLDELEEQESGQPDRAELDKLMTRLEANLDAF
CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
HANTKQARSATSDYGVELEQHVSDLEQLQKTGRIVSSLADLAKVMLERTRKAEEDMRKSE
HCCHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
DEAKALRRSLDRARRDAELDYLTGLPNRRAFENLLDRHYREARAALEPLSVAFCDIDEFK
HHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
KVNDTHGHDAGDRVIKAIADTLARISDDKCHVARHGGEEFVMLFRGLTPTEAAQKLDDAR
HCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHH
EALADRRLINRKTDEPFGQITFSGGVADVFGYGDARAALKAADAALYKAKTSGRNCIRIA
HHHHHHHHHHCCCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEC
DPA
CCC
>Mature Secondary Structure 
GWLGLRRARGTASDGGYPPPDPGGPRDLAREARYELAASITSFLVDNDLEVSPTNLLIA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
HGAFSGCNPRLAQLIVARAQSPQGITQKWLDELEEQESGQPDRAELDKLMTRLEANLDAF
CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
HANTKQARSATSDYGVELEQHVSDLEQLQKTGRIVSSLADLAKVMLERTRKAEEDMRKSE
HCCHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
DEAKALRRSLDRARRDAELDYLTGLPNRRAFENLLDRHYREARAALEPLSVAFCDIDEFK
HHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
KVNDTHGHDAGDRVIKAIADTLARISDDKCHVARHGGEEFVMLFRGLTPTEAAQKLDDAR
HCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHH
EALADRRLINRKTDEPFGQITFSGGVADVFGYGDARAALKAADAALYKAKTSGRNCIRIA
HHHHHHHHHHCCCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEC
DPA
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]