| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486858
Identifier: 103486858
GI number: 103486858
Start: 1427553
End: 1428569
Strand: Reverse
Name: 103486858
Synonym: Sala_1372
Alternate gene names: NA
Gene position: 1428569-1427553 (Counterclockwise)
Preceding gene: 103486859
Following gene: 103486856
Centisome position: 42.71
GC content: 69.03
Gene sequence:
>1017_bases ATGAGCGCGGTGCGCACGCTCGCCGACCTGCTCGCCGGACGGCGCGAGGCGGCAACCCTCGCCCCGCGCGACTGGGACAG GGTGATCACCGTCGCGCGCGCCGAGGCGATGCTGGGGACGCTGGCACACCGGCTGGACGAGACCCCGCTGCCCTCCACGG TTGCTGCGCTGTTTGCGGATCAGCGCGCCGCGGCAAAGGTCGCGACCGCGCAGGCGCTGTGGGAAGCGGAGATGGCGCGC CGCGCGCTCGCCCCCGAAGGGATCGAGTTCGTGTTGCTCAAGGGCGCCGCCTATGCCGCCGCGGGCCTTGCGTGCAGCGT CGGGCGCCAGATCGGCGACCTCGACATACTGGTGCTCGCCCCCGACATCCGCCGCGCCGAAAATGCGCTGCTGAACGCGG GGTGGGAATGGGTGAAGTCTGATCCCTATGACGATCATTATTACCGCGCGCACATGCACGAGTTGCCGCCGATGATTCAC AAGGCGCGCGACCGGATGATCGACGTGCATCACACCATCCTGCCGCGCACGCACCGAATCACGCCCGACGCGCTGGCGCT GGTCAGCGATGCGGTGACGATTGCGGGCGGCCATGCGGTGCTCTGCCCCACGGACATGGTGGTGCATTGCGCGGCGCATA TGCTCGCCGACGGCGATTTGCAGGGCGGGCTGCGCAATCTGTGGGATTTCCACTGCCTGACGCGCGATTTCGCCGCCGCG GACGCGGGATTCTGGGGCAAGCTCGACGCGCGGGCGGAACTGCACGGGCTGCGCGCCGCGGTGCGCCGGGCGGCGCGGCT GGCGCGCGATCTTTACGGAAGTGTGCTGCCGTCGGGCTGGGACGGGCAGAATGGCAGCGACCTCTGGTATCGCCGCCGCT TGCTCGCGCGGGACGATTGGGGACGGGTGACCAATCCATTGCTCGAACAGGCCTTTTACATCCGATCGCACTGGCTGCGG ATGCCGCCCCTGATGCTGGCGACGCATCTTTGGACGAAGTGGCGGAAGCCCTCCTAG
Upstream 100 bases:
>100_bases TGACGCGGCTGGTGCGCGAAACGCCGGCGTTCGGCATATCCTATCCCGACAGCGCCACCGGCATCGCATTGGTCGAACAG CTTTGGGTGGAAGCGACGGC
Downstream 100 bases:
>100_bases AGCCCGCCCCTTCAGGGGAGGGCTATAGCTCACCGAGCAGTGGCACCAGTTCGTCGAAATGGCCGATGACATGATCCGCG CCGAGCGTTTCGACCGGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 338; Mature: 337
Protein sequence:
>338_residues MSAVRTLADLLAGRREAATLAPRDWDRVITVARAEAMLGTLAHRLDETPLPSTVAALFADQRAAAKVATAQALWEAEMAR RALAPEGIEFVLLKGAAYAAAGLACSVGRQIGDLDILVLAPDIRRAENALLNAGWEWVKSDPYDDHYYRAHMHELPPMIH KARDRMIDVHHTILPRTHRITPDALALVSDAVTIAGGHAVLCPTDMVVHCAAHMLADGDLQGGLRNLWDFHCLTRDFAAA DAGFWGKLDARAELHGLRAAVRRAARLARDLYGSVLPSGWDGQNGSDLWYRRRLLARDDWGRVTNPLLEQAFYIRSHWLR MPPLMLATHLWTKWRKPS
Sequences:
>Translated_338_residues MSAVRTLADLLAGRREAATLAPRDWDRVITVARAEAMLGTLAHRLDETPLPSTVAALFADQRAAAKVATAQALWEAEMAR RALAPEGIEFVLLKGAAYAAAGLACSVGRQIGDLDILVLAPDIRRAENALLNAGWEWVKSDPYDDHYYRAHMHELPPMIH KARDRMIDVHHTILPRTHRITPDALALVSDAVTIAGGHAVLCPTDMVVHCAAHMLADGDLQGGLRNLWDFHCLTRDFAAA DAGFWGKLDARAELHGLRAAVRRAARLARDLYGSVLPSGWDGQNGSDLWYRRRLLARDDWGRVTNPLLEQAFYIRSHWLR MPPLMLATHLWTKWRKPS >Mature_337_residues SAVRTLADLLAGRREAATLAPRDWDRVITVARAEAMLGTLAHRLDETPLPSTVAALFADQRAAAKVATAQALWEAEMARR ALAPEGIEFVLLKGAAYAAAGLACSVGRQIGDLDILVLAPDIRRAENALLNAGWEWVKSDPYDDHYYRAHMHELPPMIHK ARDRMIDVHHTILPRTHRITPDALALVSDAVTIAGGHAVLCPTDMVVHCAAHMLADGDLQGGLRNLWDFHCLTRDFAAAD AGFWGKLDARAELHGLRAAVRRAARLARDLYGSVLPSGWDGQNGSDLWYRRRLLARDDWGRVTNPLLEQAFYIRSHWLRM PPLMLATHLWTKWRKPS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37564; Mature: 37432
Theoretical pI: Translated: 8.36; Mature: 8.36
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVRTLADLLAGRREAATLAPRDWDRVITVARAEAMLGTLAHRLDETPLPSTVAALFAD CHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH QRAAAKVATAQALWEAEMARRALAPEGIEFVLLKGAAYAAAGLACSVGRQIGDLDILVLA HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEC PDIRRAENALLNAGWEWVKSDPYDDHYYRAHMHELPPMIHKARDRMIDVHHTILPRTHRI CCHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC TPDALALVSDAVTIAGGHAVLCPTDMVVHCAAHMLADGDLQGGLRNLWDFHCLTRDFAAA CHHHHHHHHHHHEECCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC DAGFWGKLDARAELHGLRAAVRRAARLARDLYGSVLPSGWDGQNGSDLWYRRRLLARDDW CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC GRVTNPLLEQAFYIRSHWLRMPPLMLATHLWTKWRKPS HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure SAVRTLADLLAGRREAATLAPRDWDRVITVARAEAMLGTLAHRLDETPLPSTVAALFAD HHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH QRAAAKVATAQALWEAEMARRALAPEGIEFVLLKGAAYAAAGLACSVGRQIGDLDILVLA HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEC PDIRRAENALLNAGWEWVKSDPYDDHYYRAHMHELPPMIHKARDRMIDVHHTILPRTHRI CCHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC TPDALALVSDAVTIAGGHAVLCPTDMVVHCAAHMLADGDLQGGLRNLWDFHCLTRDFAAA CHHHHHHHHHHHEECCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC DAGFWGKLDARAELHGLRAAVRRAARLARDLYGSVLPSGWDGQNGSDLWYRRRLLARDDW CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC GRVTNPLLEQAFYIRSHWLRMPPLMLATHLWTKWRKPS HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA