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The map label for this gene is ygcF [H]

Identifier: 103486840

GI number: 103486840

Start: 1412285

End: 1412917

Strand: Reverse

Name: ygcF [H]

Synonym: Sala_1354

Alternate gene names: 103486840

Gene position: 1412917-1412285 (Counterclockwise)

Preceding gene: 103486841

Following gene: 103486838

Centisome position: 42.24

GC content: 65.24

Gene sequence:

>633_bases
ATGGCATATTCGGTCAAAGAGATTTTCCTGACCCTGCAAGGGGAGGGCGCGCAGGCCGGTCGCCGCGCAGTCTTCTGCCG
CTTTGCCGGCTGCAATTTGTGGACCGGGCGCGAACAGGACCGCGCGAAAGCCATCTGCCGCTTCTGCGACACCGATTTCG
TCGGCACCGACGGCACATTGGGCGCCAAATATCGCGACGCAGCGGCGCTTGCCGATGTCATCGCCGAAAGTTGGGGGCCG
GGCAGCGACGACCGCTATGTCGTCCTCACGGGCGGCGAGCCGATGTTGCAGGTCGACGACGCGCTGATAGACGCGCTACA
TGCGCGCGGCTTCACCATCGCGATCGAAAGCAACGGCACGCTGCCTATCCCGCGCAGCATCGACTGGATCTGCGTCAGCC
CGAAGGCGGGAAGCGAACTGGTGCAATCGAGCGGTGACGAACTCAAGCTCGTGTGGCCGCAACCCGGAAGCGACGTCGCG
AAGCTTGCTGCGCTGGATTTCCGGCATCTGCTCGTCCAGCCGCTCGACGATCGCAACGCCGCGGCCAATGTGCAGGCGTG
CATCGACCTGGTGATGGCCGACCCGCGCTGGCGCCTGTCGCTCCAGACGCACAAGAGCCTGGGGCTGCGCTAG

Upstream 100 bases:

>100_bases
CCCGAGGGTCTGCACTGCGGGGCATGCGACAGCTGCCGCCTGCGCCGCAAGGGTTTCGCCGACGCCGGGCTCGCCGACCC
GACGCGCTACGCCTGAACCC

Downstream 100 bases:

>100_bases
GTGTTTGGTCCCAGCATGTGATGGTTGGGTTTGACGATAAAGACATCGGGCTTTGATTTCCAGAGTTCCTCGATGGCTTC
ATATGGTGTCCTGAACTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MAYSVKEIFLTLQGEGAQAGRRAVFCRFAGCNLWTGREQDRAKAICRFCDTDFVGTDGTLGAKYRDAAALADVIAESWGP
GSDDRYVVLTGGEPMLQVDDALIDALHARGFTIAIESNGTLPIPRSIDWICVSPKAGSELVQSSGDELKLVWPQPGSDVA
KLAALDFRHLLVQPLDDRNAAANVQACIDLVMADPRWRLSLQTHKSLGLR

Sequences:

>Translated_210_residues
MAYSVKEIFLTLQGEGAQAGRRAVFCRFAGCNLWTGREQDRAKAICRFCDTDFVGTDGTLGAKYRDAAALADVIAESWGP
GSDDRYVVLTGGEPMLQVDDALIDALHARGFTIAIESNGTLPIPRSIDWICVSPKAGSELVQSSGDELKLVWPQPGSDVA
KLAALDFRHLLVQPLDDRNAAANVQACIDLVMADPRWRLSLQTHKSLGLR
>Mature_209_residues
AYSVKEIFLTLQGEGAQAGRRAVFCRFAGCNLWTGREQDRAKAICRFCDTDFVGTDGTLGAKYRDAAALADVIAESWGPG
SDDRYVVLTGGEPMLQVDDALIDALHARGFTIAIESNGTLPIPRSIDWICVSPKAGSELVQSSGDELKLVWPQPGSDVAK
LAALDFRHLLVQPLDDRNAAANVQACIDLVMADPRWRLSLQTHKSLGLR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=240, Percent_Identity=31.25, Blast_Score=85, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 22788; Mature: 22657

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSVKEIFLTLQGEGAQAGRRAVFCRFAGCNLWTGREQDRAKAICRFCDTDFVGTDGTL
CCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
GAKYRDAAALADVIAESWGPGSDDRYVVLTGGEPMLQVDDALIDALHARGFTIAIESNGT
CCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEHHHHHHHHHHCCCEEEEEECCCC
LPIPRSIDWICVSPKAGSELVQSSGDELKLVWPQPGSDVAKLAALDFRHLLVQPLDDRNA
CCCCCCCCEEEECCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCC
AANVQACIDLVMADPRWRLSLQTHKSLGLR
HHHHHHHHHHHCCCCCEEEEEEECCCCCCC
>Mature Secondary Structure 
AYSVKEIFLTLQGEGAQAGRRAVFCRFAGCNLWTGREQDRAKAICRFCDTDFVGTDGTL
CCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
GAKYRDAAALADVIAESWGPGSDDRYVVLTGGEPMLQVDDALIDALHARGFTIAIESNGT
CCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEHHHHHHHHHHCCCEEEEEECCCC
LPIPRSIDWICVSPKAGSELVQSSGDELKLVWPQPGSDVAKLAALDFRHLLVQPLDDRNA
CCCCCCCCEEEECCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCC
AANVQACIDLVMADPRWRLSLQTHKSLGLR
HHHHHHHHHHHCCCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]