Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486826

Identifier: 103486826

GI number: 103486826

Start: 1401436

End: 1402215

Strand: Direct

Name: 103486826

Synonym: Sala_1340

Alternate gene names: NA

Gene position: 1401436-1402215 (Clockwise)

Preceding gene: 103486824

Following gene: 103486832

Centisome position: 41.89

GC content: 65.38

Gene sequence:

>780_bases
ATGCGCAAGAGTTTCACCGGCATGGTCCTGGCGACATTGGCGTCGATCGGCCTCGTGCTGATGCCGGCCCCGGCAACGGC
GCAAATGCGCGAAATCGATCCCAGCAACATGCAGATCGATTCCGATCTCGACAATCCCGCGCCGCCCCCCGCGACCGGCG
ATCCCGCGCCCGGCGAATCCTATGCCGACGACCTGGCCACGGGCGATCAGCAGACGAGCGAAACACCAGCCGATTCCGCT
GCCACTGCCAGCGATGGCGCCGAGGTCGCGGCCACCACCACCGCCAACGAGCCGGGATCGACCTACAAGAAGGACGATCT
GATCGGCGCCGCCGAGGGTGTGTTCGGAAAGGGGGCGCAAGGCCTGGCGGCGTTGATCGAGGACATATTGAAGGAACAGG
GCGAACCCAACGCCTATATCGTCGGCCGCGAGGCCGGCGGCGCACTGGTGCTCGGCGTGCGTTACGGTTCGGGGACGCTG
TACCACAAGGTCGAAGGCGAGCTTCCGGTCTATTGGACCGGCCCCTCCATCGGCTTCGACGCGGGCGCGAACGCGGGCAA
TACCTTCGTCCTCGTCTACAACCTTTTCGACAGCGAAGACCTCTACAAGCGCTATCCCGCGGGCGAGGGCGCCGCCTATC
TGGTGGGCGGTTTCAACGCCAGCTATCTGCGCCGCGGCGACGTGGTGCTGATCCCGATCCGCGTCGGCGTCGGCGCTCGG
CTGGGCGCGAATGTCGGCTATATGAAGTTCCGCAAGAAGCAGAACTGGCTGCCGTTCTGA

Upstream 100 bases:

>100_bases
TCGACTCGGGTCATCGCCCGTTCATTGCCCGCCCGCCAAAGCGGGTCATGATCGACGCGGGGTTCGCCGCGACAGTTTTT
GTTTTCCTTGGGGGTTCGCA

Downstream 100 bases:

>100_bases
CAAAACTGCGGGCGTAACCAAAAAGATGGCTCGCGCTTCGGCGCGGGCCTTTTTGTTGTGCGGTGTTGGCTCCGGCGGCT
ATCGCGGTTGCCGTCTCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MRKSFTGMVLATLASIGLVLMPAPATAQMREIDPSNMQIDSDLDNPAPPPATGDPAPGESYADDLATGDQQTSETPADSA
ATASDGAEVAATTTANEPGSTYKKDDLIGAAEGVFGKGAQGLAALIEDILKEQGEPNAYIVGREAGGALVLGVRYGSGTL
YHKVEGELPVYWTGPSIGFDAGANAGNTFVLVYNLFDSEDLYKRYPAGEGAAYLVGGFNASYLRRGDVVLIPIRVGVGAR
LGANVGYMKFRKKQNWLPF

Sequences:

>Translated_259_residues
MRKSFTGMVLATLASIGLVLMPAPATAQMREIDPSNMQIDSDLDNPAPPPATGDPAPGESYADDLATGDQQTSETPADSA
ATASDGAEVAATTTANEPGSTYKKDDLIGAAEGVFGKGAQGLAALIEDILKEQGEPNAYIVGREAGGALVLGVRYGSGTL
YHKVEGELPVYWTGPSIGFDAGANAGNTFVLVYNLFDSEDLYKRYPAGEGAAYLVGGFNASYLRRGDVVLIPIRVGVGAR
LGANVGYMKFRKKQNWLPF
>Mature_259_residues
MRKSFTGMVLATLASIGLVLMPAPATAQMREIDPSNMQIDSDLDNPAPPPATGDPAPGESYADDLATGDQQTSETPADSA
ATASDGAEVAATTTANEPGSTYKKDDLIGAAEGVFGKGAQGLAALIEDILKEQGEPNAYIVGREAGGALVLGVRYGSGTL
YHKVEGELPVYWTGPSIGFDAGANAGNTFVLVYNLFDSEDLYKRYPAGEGAAYLVGGFNASYLRRGDVVLIPIRVGVGAR
LGANVGYMKFRKKQNWLPF

Specific function: Unknown

COG id: COG5400

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27073; Mature: 27073

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKSFTGMVLATLASIGLVLMPAPATAQMREIDPSNMQIDSDLDNPAPPPATGDPAPGES
CCCCHHHHHHHHHHHCCEEEECCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCH
YADDLATGDQQTSETPADSAATASDGAEVAATTTANEPGSTYKKDDLIGAAEGVFGKGAQ
HHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCH
GLAALIEDILKEQGEPNAYIVGREAGGALVLGVRYGSGTLYHKVEGELPVYWTGPSIGFD
HHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEECCCCCCCC
AGANAGNTFVLVYNLFDSEDLYKRYPAGEGAAYLVGGFNASYLRRGDVVLIPIRVGVGAR
CCCCCCCEEEEEEEECCCHHHHHHCCCCCCCEEEEECCCHHHEECCCEEEEEEEECCCCC
LGANVGYMKFRKKQNWLPF
CCCCCCHHEEECCCCCCCC
>Mature Secondary Structure
MRKSFTGMVLATLASIGLVLMPAPATAQMREIDPSNMQIDSDLDNPAPPPATGDPAPGES
CCCCHHHHHHHHHHHCCEEEECCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCH
YADDLATGDQQTSETPADSAATASDGAEVAATTTANEPGSTYKKDDLIGAAEGVFGKGAQ
HHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCH
GLAALIEDILKEQGEPNAYIVGREAGGALVLGVRYGSGTLYHKVEGELPVYWTGPSIGFD
HHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEECCCCCCCC
AGANAGNTFVLVYNLFDSEDLYKRYPAGEGAAYLVGGFNASYLRRGDVVLIPIRVGVGAR
CCCCCCCEEEEEEEECCCHHHHHHCCCCCCCEEEEECCCHHHEECCCEEEEEEEECCCCC
LGANVGYMKFRKKQNWLPF
CCCCCCHHEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA