| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is thiE [H]
Identifier: 103486801
GI number: 103486801
Start: 1373496
End: 1374146
Strand: Reverse
Name: thiE [H]
Synonym: Sala_1315
Alternate gene names: 103486801
Gene position: 1374146-1373496 (Counterclockwise)
Preceding gene: 103486803
Following gene: 103486800
Centisome position: 41.08
GC content: 66.36
Gene sequence:
>651_bases ATGACCACCGCACCGACTGCACCGACCTGCCAGCTTTACTTGATCTCGCCGCTCGATGTCGGTGGCGATTTTCCTGCGCG GCTGGAGGAGGCGCTGGCCGCGGGGCCAGTCGCGGCGTTCCAGTTTCGCGTCAAGGGGCTGGACCAGCATGACGCGGCGC GCCTCGCGGAGCCTTTGCGGGCGATTTGCGCGGAGCATGACGTGGCCTTCATCGTCAATGACGATGTCGCGCTGGCAAAG CGGCTGAAGGCCGATGGCGTGCATCTGGGGCAGGGCGATGGCGATCCGAAGGAGGCGCGCCGCCAACTCGGTCCCGATGC TCAGATCGGCGTGACGTGCCATGATAGCCGCCATCTGGCGATGGATGCGGGCGAGGCGGGCGCCGACTATGTGGCCTTCG GTGCCTTTTTCCCGACGACGACCAAGACGGTCGAGCATCGCGCCGACCCCGAAATCCTGACCTGGTGGCAGGGCCTGTTC GAGCTGCCCTGCGTGGCGATCGGGGGAATCACGATCGACAACGCGAAAACACTCGCCGATGCCGGGGCCGACTTTGTCGC GGTATCGGGCGGCGTCTGGAATTATCGTGACGGACCCGGCGCCGCGGTGCGCGCCTTTGCCGAAATCCTGGGCAATCAGC CCGCGGGATAG
Upstream 100 bases:
>100_bases GCACAGGCGGAAAGGAGGAGAGCGGAAGGAAAGGCGACGGTCGCAAGGTGCATGATCTTCTGCATTTGCCCGCATCTGGC GGCGTCGCTATGAACGCGCC
Downstream 100 bases:
>100_bases TCACGTTCCGGCTTTTTCGGGTCGCCCTTGTCTTTCGGCGCCGCCGCCGCATCCTTGCGCCATCCGAACAGGCCGACGCA GGGCGCTCCGCGCGGCGAAG
Product: thiamine-phosphate pyrophosphorylase
Products: NA
Alternate protein names: TMP pyrophosphorylase; TMP-PPase; Thiamine-phosphate synthase [H]
Number of amino acids: Translated: 216; Mature: 215
Protein sequence:
>216_residues MTTAPTAPTCQLYLISPLDVGGDFPARLEEALAAGPVAAFQFRVKGLDQHDAARLAEPLRAICAEHDVAFIVNDDVALAK RLKADGVHLGQGDGDPKEARRQLGPDAQIGVTCHDSRHLAMDAGEAGADYVAFGAFFPTTTKTVEHRADPEILTWWQGLF ELPCVAIGGITIDNAKTLADAGADFVAVSGGVWNYRDGPGAAVRAFAEILGNQPAG
Sequences:
>Translated_216_residues MTTAPTAPTCQLYLISPLDVGGDFPARLEEALAAGPVAAFQFRVKGLDQHDAARLAEPLRAICAEHDVAFIVNDDVALAK RLKADGVHLGQGDGDPKEARRQLGPDAQIGVTCHDSRHLAMDAGEAGADYVAFGAFFPTTTKTVEHRADPEILTWWQGLF ELPCVAIGGITIDNAKTLADAGADFVAVSGGVWNYRDGPGAAVRAFAEILGNQPAG >Mature_215_residues TTAPTAPTCQLYLISPLDVGGDFPARLEEALAAGPVAAFQFRVKGLDQHDAARLAEPLRAICAEHDVAFIVNDDVALAKR LKADGVHLGQGDGDPKEARRQLGPDAQIGVTCHDSRHLAMDAGEAGADYVAFGAFFPTTTKTVEHRADPEILTWWQGLFE LPCVAIGGITIDNAKTLADAGADFVAVSGGVWNYRDGPGAAVRAFAEILGNQPAG
Specific function: Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) [H]
COG id: COG0352
COG function: function code H; Thiamine monophosphate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TMP-PPase family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6325042, Length=137, Percent_Identity=31.3868613138686, Blast_Score=66, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR022998 - InterPro: IPR003733 [H]
Pfam domain/function: PF02581 TMP-TENI [H]
EC number: =2.5.1.3 [H]
Molecular weight: Translated: 22704; Mature: 22572
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTAPTAPTCQLYLISPLDVGGDFPARLEEALAAGPVAAFQFRVKGLDQHDAARLAEPLR CCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHEEEEEECCCCCHHHHHHHHHHH AICAEHDVAFIVNDDVALAKRLKADGVHLGQGDGDPKEARRQLGPDAQIGVTCHDSRHLA HHHCCCCEEEEEECCHHHHHHHHCCCEEECCCCCCHHHHHHHCCCCCEEEEEEECCCEEE MDAGEAGADYVAFGAFFPTTTKTVEHRADPEILTWWQGLFELPCVAIGGITIDNAKTLAD EECCCCCCCEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCEEECCEEECCCHHHHH AGADFVAVSGGVWNYRDGPGAAVRAFAEILGNQPAG CCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCC >Mature Secondary Structure TTAPTAPTCQLYLISPLDVGGDFPARLEEALAAGPVAAFQFRVKGLDQHDAARLAEPLR CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHEEEEEECCCCCHHHHHHHHHHH AICAEHDVAFIVNDDVALAKRLKADGVHLGQGDGDPKEARRQLGPDAQIGVTCHDSRHLA HHHCCCCEEEEEECCHHHHHHHHCCCEEECCCCCCHHHHHHHCCCCCEEEEEEECCCEEE MDAGEAGADYVAFGAFFPTTTKTVEHRADPEILTWWQGLFELPCVAIGGITIDNAKTLAD EECCCCCCCEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCEEECCEEECCCHHHHH AGADFVAVSGGVWNYRDGPGAAVRAFAEILGNQPAG CCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA