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The map label for this gene is 103486779

Identifier: 103486779

GI number: 103486779

Start: 1351745

End: 1353379

Strand: Reverse

Name: 103486779

Synonym: Sala_1293

Alternate gene names: NA

Gene position: 1353379-1351745 (Counterclockwise)

Preceding gene: 103486780

Following gene: 103486778

Centisome position: 40.46

GC content: 64.83

Gene sequence:

>1635_bases
ATGACGACTCCGGGCAAGGAGCTGCTTTTTCTCGCATTGGGGGGATCGGGCGAGATCGGCATGAACGCCAATCTATATGG
CTGTGACGGCAAATGGATCATGCTCGACCTGGGCGTGACCTTTGGCAGCCACGATTATCCGGGCATCGACATCGTCATGC
CCGATCTGGAGTTCATCGAGGACCGCAAGAAGGATCTGCTCGGCATCATCCTGACGCACGGGCATGAGGATCATATCGGC
GCCATCCCCTATCTCGCCGCCGACCTCGGCGTGCCGCTCTATGCCAACCGCTTCACCGCGGGGCTGATCGCGCACAAGCT
CGCCGAAGAGGGGCTGGAGGGCGAAGTTGAAATCAAGGTCATCGATATCGACGACAGTTTCCGCATCGGCCCCTTTGGCA
TCCGCATGGTCCCGCTCGCGCATTCGATCCTCGAAATGAGCGCGGTGGTGATCGACACGCCCTATGGTCGCGTCTTTCAC
ACTGGCGACTGGAAGCTCGACGAGGAACCGATCCTGGGTGTACCCGCAACCGCCGCAGCGCTCAGTGCGATCGGCGACGA
GGGCGTCGATTTTCTGGTCTGCGATTCGACCAACGCCTTCAACGCCGAAGCATCGGGCAGTGAAGGCGCGTTGCGCGAAG
GGCTGGAGCAGGCGGTCGGCGCGGCGAAGGGCCGGGTGGTCGTCACCACCTTTGCCTCGAACGCCGCGCGGCTGGCGACA
TTGGGGGAAGTCGCGCGGGCAACGGGACGCAGCCTGTGCGTCGCGGGGCGCTCGCTCGACCGCATCCTCGGCGTTGCGCG
TTCGGTCGGTTATCTCACCGATTTTCCCCCGACGGTCGATTTCGACGAGGCGATGCGCCTGCCGCGCGACAAGGTGATGG
TGGTCGCGACGGGCGGGCAGGGCGAGCCGCGCGCGGCGCTGGCGCGCATGGCGGCCGACGGCCACCAGATCAAGCTGGAG
GCCGGCGATACGGTTGTCTTTTCCTCGAAGCAGATCCCCGGCAACGAAGTCGCGATCGGACGGATCATGAACCAGCTCGC
CGCCAAGGACGTGCTGACCGTCACCGAAAAACAGGCGCATATTCATGTCAGCGGCCATCCGGGGAAGCCTGAGCTGGCGG
CGCTCTATGGCTGGCTGCGGCCCAGGCTTGTCGTGCCCGTGCACGGCGAAATCCGCCATATGCACGAACAGGCGCGCTTT
GCGCTCGAAACGGGCGTTCCCGATACGCTGGTGCAGGAAAATGGCGACCTTGTGCGGCTGGCGCCCGGCGCGGCGCAGAT
CGTCGAGCGCGTGCGGTCGGGCCGACTGATCCTCGACGGCGACGTCATCCTGCCCGCCGATGGCGAAACGATGAGCGAGC
GGCGCAAGCTGGCGCTCAACGGTCATGTCACCGTCGCGGCGGTCTTTTCGGGCAAAAACTTCGTCGACAGCGCGATCAGC
TATCGCGGCGTTCCGGTCGAGGACGAACGCGAGGCCTTTATCGACGAAATGCGCGAAGCTGCCGAACAGGCCGCGACCGG
CCCCGCGCGCGACGAAGAAAAGCTGCGCGAAGCGATCCGGCTGGGCGTGCGGCGGATCGCGACCGACTGGACGGGGAAGA
AGCCGGTGGTCGATGTGATGCTCGTCGAGATTTGA

Upstream 100 bases:

>100_bases
CGACACTTTTTCAGGAACAGGCCCATCTGTTCGATCGTATCGAACCCGATTTGACGCTGAACGGGCTCATGCACCTCTAT
AACCAAGGACAACAAAAGAT

Downstream 100 bases:

>100_bases
AGGCAAGCCGATGAAATGGACCTCCGCCCTTGCGATCTTCACGCTATTCTGGGTGTTCAGCGCCTTCTTCGTGCTGCCCT
TCCACGGCCGCCGCTCGAGC

Product: beta-lactamase-like protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 544; Mature: 543

Protein sequence:

>544_residues
MTTPGKELLFLALGGSGEIGMNANLYGCDGKWIMLDLGVTFGSHDYPGIDIVMPDLEFIEDRKKDLLGIILTHGHEDHIG
AIPYLAADLGVPLYANRFTAGLIAHKLAEEGLEGEVEIKVIDIDDSFRIGPFGIRMVPLAHSILEMSAVVIDTPYGRVFH
TGDWKLDEEPILGVPATAAALSAIGDEGVDFLVCDSTNAFNAEASGSEGALREGLEQAVGAAKGRVVVTTFASNAARLAT
LGEVARATGRSLCVAGRSLDRILGVARSVGYLTDFPPTVDFDEAMRLPRDKVMVVATGGQGEPRAALARMAADGHQIKLE
AGDTVVFSSKQIPGNEVAIGRIMNQLAAKDVLTVTEKQAHIHVSGHPGKPELAALYGWLRPRLVVPVHGEIRHMHEQARF
ALETGVPDTLVQENGDLVRLAPGAAQIVERVRSGRLILDGDVILPADGETMSERRKLALNGHVTVAAVFSGKNFVDSAIS
YRGVPVEDEREAFIDEMREAAEQAATGPARDEEKLREAIRLGVRRIATDWTGKKPVVDVMLVEI

Sequences:

>Translated_544_residues
MTTPGKELLFLALGGSGEIGMNANLYGCDGKWIMLDLGVTFGSHDYPGIDIVMPDLEFIEDRKKDLLGIILTHGHEDHIG
AIPYLAADLGVPLYANRFTAGLIAHKLAEEGLEGEVEIKVIDIDDSFRIGPFGIRMVPLAHSILEMSAVVIDTPYGRVFH
TGDWKLDEEPILGVPATAAALSAIGDEGVDFLVCDSTNAFNAEASGSEGALREGLEQAVGAAKGRVVVTTFASNAARLAT
LGEVARATGRSLCVAGRSLDRILGVARSVGYLTDFPPTVDFDEAMRLPRDKVMVVATGGQGEPRAALARMAADGHQIKLE
AGDTVVFSSKQIPGNEVAIGRIMNQLAAKDVLTVTEKQAHIHVSGHPGKPELAALYGWLRPRLVVPVHGEIRHMHEQARF
ALETGVPDTLVQENGDLVRLAPGAAQIVERVRSGRLILDGDVILPADGETMSERRKLALNGHVTVAAVFSGKNFVDSAIS
YRGVPVEDEREAFIDEMREAAEQAATGPARDEEKLREAIRLGVRRIATDWTGKKPVVDVMLVEI
>Mature_543_residues
TTPGKELLFLALGGSGEIGMNANLYGCDGKWIMLDLGVTFGSHDYPGIDIVMPDLEFIEDRKKDLLGIILTHGHEDHIGA
IPYLAADLGVPLYANRFTAGLIAHKLAEEGLEGEVEIKVIDIDDSFRIGPFGIRMVPLAHSILEMSAVVIDTPYGRVFHT
GDWKLDEEPILGVPATAAALSAIGDEGVDFLVCDSTNAFNAEASGSEGALREGLEQAVGAAKGRVVVTTFASNAARLATL
GEVARATGRSLCVAGRSLDRILGVARSVGYLTDFPPTVDFDEAMRLPRDKVMVVATGGQGEPRAALARMAADGHQIKLEA
GDTVVFSSKQIPGNEVAIGRIMNQLAAKDVLTVTEKQAHIHVSGHPGKPELAALYGWLRPRLVVPVHGEIRHMHEQARFA
LETGVPDTLVQENGDLVRLAPGAAQIVERVRSGRLILDGDVILPADGETMSERRKLALNGHVTVAAVFSGKNFVDSAISY
RGVPVEDEREAFIDEMREAAEQAATGPARDEEKLREAIRLGVRRIATDWTGKKPVVDVMLVEI

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 58353; Mature: 58222

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPGKELLFLALGGSGEIGMNANLYGCDGKWIMLDLGVTFGSHDYPGIDIVMPDLEFIE
CCCCCCEEEEEEECCCCCCCCCCEEEECCCCEEEEEECEEECCCCCCCEEEEECCHHHHH
DRKKDLLGIILTHGHEDHIGAIPYLAADLGVPLYANRFTAGLIAHKLAEEGLEGEVEIKV
HHHHHEEEEEEECCCCCCCCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCCEEEEEE
IDIDDSFRIGPFGIRMVPLAHSILEMSAVVIDTPYGRVFHTGDWKLDEEPILGVPATAAA
EECCCCCEECCCCEEHHHHHHHHHHHCEEEEECCCCCEEECCCCCCCCCCCCCCCHHHHH
LSAIGDEGVDFLVCDSTNAFNAEASGSEGALREGLEQAVGAAKGRVVVTTFASNAARLAT
HHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
LGEVARATGRSLCVAGRSLDRILGVARSVGYLTDFPPTVDFDEAMRLPRDKVMVVATGGQ
HHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCC
GEPRAALARMAADGHQIKLEAGDTVVFSSKQIPGNEVAIGRIMNQLAAKDVLTVTEKQAH
CCHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHEEECCCEE
IHVSGHPGKPELAALYGWLRPRLVVPVHGEIRHMHEQARFALETGVPDTLVQENGDLVRL
EEEECCCCCCHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEE
APGAAQIVERVRSGRLILDGDVILPADGETMSERRKLALNGHVTVAAVFSGKNFVDSAIS
CCCHHHHHHHHHCCCEEEECCEEEECCCCCHHHHHEEEECCCEEEEEEECCCHHHHHHHH
YRGVPVEDEREAFIDEMREAAEQAATGPARDEEKLREAIRLGVRRIATDWTGKKPVVDVM
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
LVEI
EEEC
>Mature Secondary Structure 
TTPGKELLFLALGGSGEIGMNANLYGCDGKWIMLDLGVTFGSHDYPGIDIVMPDLEFIE
CCCCCEEEEEEECCCCCCCCCCEEEECCCCEEEEEECEEECCCCCCCEEEEECCHHHHH
DRKKDLLGIILTHGHEDHIGAIPYLAADLGVPLYANRFTAGLIAHKLAEEGLEGEVEIKV
HHHHHEEEEEEECCCCCCCCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCCEEEEEE
IDIDDSFRIGPFGIRMVPLAHSILEMSAVVIDTPYGRVFHTGDWKLDEEPILGVPATAAA
EECCCCCEECCCCEEHHHHHHHHHHHCEEEEECCCCCEEECCCCCCCCCCCCCCCHHHHH
LSAIGDEGVDFLVCDSTNAFNAEASGSEGALREGLEQAVGAAKGRVVVTTFASNAARLAT
HHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
LGEVARATGRSLCVAGRSLDRILGVARSVGYLTDFPPTVDFDEAMRLPRDKVMVVATGGQ
HHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCC
GEPRAALARMAADGHQIKLEAGDTVVFSSKQIPGNEVAIGRIMNQLAAKDVLTVTEKQAH
CCHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHEEECCCEE
IHVSGHPGKPELAALYGWLRPRLVVPVHGEIRHMHEQARFALETGVPDTLVQENGDLVRL
EEEECCCCCCHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEE
APGAAQIVERVRSGRLILDGDVILPADGETMSERRKLALNGHVTVAAVFSGKNFVDSAIS
CCCHHHHHHHHHCCCEEEECCEEEECCCCCHHHHHEEEECCCEEEEEEECCCHHHHHHHH
YRGVPVEDEREAFIDEMREAAEQAATGPARDEEKLREAIRLGVRRIATDWTGKKPVVDVM
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
LVEI
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12948626 [H]