| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486736
Identifier: 103486736
GI number: 103486736
Start: 1300431
End: 1302407
Strand: Reverse
Name: 103486736
Synonym: Sala_1249
Alternate gene names: NA
Gene position: 1302407-1300431 (Counterclockwise)
Preceding gene: 103486737
Following gene: 103486734
Centisome position: 38.93
GC content: 54.32
Gene sequence:
>1977_bases ATGAAAATCCCGGGTCAGTTCTCAGCGCAAATCAACATTGAGGTGGCCGACCGTGCCTATTACCAGATTGGTGAGGGCGC ACAGAAGCTCAGGATCGATGGGTATGCAGGTGACCCACGCGACGCAGAGGGTGTTCTCGGACTGATCGTCTGTGATTTCG TTGACGGCGACGAAGTTCAGACCTTCGGGAAATCCGACGTTTCGCCTATCCTCAATCCTCTGATCCGCTTCCTTAAAAAA GCCCGGACCGAAGAGTTCAGGGATTCGTTGAATGAAGTCAGCCCCGCATTTCAGGTCTCGGATTTGATCATCACCACGTG GTCGCGGGTCACTAAGGTCAAGCTGATCCTTGTTTCGAACCGCCAGTATATCGGCCGGGATGACGCGGTGAAACTTGCAG AACTTGGCGATGTACCAGTCACCTGGTCTGTATGGGATCTCGCACGATTCGAACGTTTCGACCGATCCGGTCAGGCGCGA GAGGATATGGTGATCGATTTCGCCAATGATTTCGGCGCTCCCCTACCTGCGCTCAAGGCTTCCCAGACCGACGCAGCTCT CGAGAGCTATCTAATGATCGTGCCAGGTCAGCAGTTGGCAGCGATCTATGATCGATGGGGCGCGCGCCTGCTGGAGGCGA ATGTGCGGTCTTTTCTTCAGGCGCGGGCGAAGACGAACAAGGGCATCCAGAAGACCGTTAAGGAGGAGCCTGAGCTCTTC TTTCCATACAACAATGGACTATCCGCCACGGCAGACGAAGTCACCTGTGTTCGTTCGGAAGAAGGTCTTGCGATTGCTTC CATTAACAATTTGCAGATCGTAAACGGAGCGCAGACGACAGGATCGATTCACAGCGCACTTAAAACGGCGAAGGAGCAGC TTTCGCATGTATTCGTGCAAATGAAGCTGACAGTGGTGCCTCCTGATCGGTCAGAGGAAATTGTGCCAAAGATATCGGAG TACGCCAATACTCAGAACAAGGTGAATGCGGCCGACTTTTTTTCCAATCACCCCTTCCACATCCGTATCGAGCAGTTTTC TCGGAGCGTCATCTTCACTGCGCGTGAAGGTGAGCGTCACGACAGCAAGTGGTTCTATGAGCGTTCTCGCGGTCAGTTCA TCAACGCGCGGAGCCGACTTACGGTCGCACAGCAGAAGAAGTTTGATCTAGAGTTCCCCAAGGCGCAGCTCTTTAGCAAG ACTGACCTAGCGAAGTTCGAATACTCGGCCTCCGGGCATCCTCACATTGTTTCGCGGGGGGCGCAGAAGAACTTTGCCGA TTTCGCGAGAGAGATCGGTGAGGCCTGGCCAAAGAGCGACAGCAAGTATGATGAACTTTGGTATCGGCGCCTGATTGCAA AGGCCATCATCTTCCGCAGGTTGGAAAGCGAAGTGCCAAAGCAAGATTGGTACGAAGGCGGCTATCGCGCCAATATCGTC ACCTACGCCATGGCAAAAGTGTTTCACGATGCCAATGGCCAGAAACAGATGCTCGATCTCGACACCATCTGGCGGCGGCA GGCGGTTTCCGATGCCCTTCTGCGCGCCCTGCTTCTCGCCGCGGCGGAGGCTCATGATGCGATTACGCATCCTCCGACTG GCGTTCGCAACATGTCGGAATGGGCAAAGCAACAGGCCTGTTGGAACGGCCTTAAGAGCCGAACACTGAAGTATGGGGAA GATTTCGGAAGTTGCTTGGCCCTCGTAGATACCGTTCGCACCGAGGAACGCGAAGCTCGCGCTAACACGGTGTTGACAGA GGGCATAAACGCTCAGGCCGAAGTCGTGAAACTTAAGGCTCCATTCTGGAATAATGTAATGGAATGGGGGCGGGCGAAAA AGAAACTGACTCCTAAGGATATGCAAGTTCTAGAGATTTGCAGTTCGATGCCGCGACGGATACCCACCGATTTCCAGGCA AAGCACGCGCTCGAGGTGCTTGCGCGCATTCGTGAACACGGGTTCGATAGCGGCTGA
Upstream 100 bases:
>100_bases CCAGTTCCACCGCGCCCAAATCCAGAAAGGGGTAATGCCAACACTTGACGATGCCCGCTAAGGGCAACACTTAACCCATA CCCACCCGGGTCAGTTCTCG
Downstream 100 bases:
>100_bases TGTTTATGGCGCTAGCCTTGTGCCTAGATCTATCTGATCCCGTGCTTTCGGTCACCGCCGCTCTCCATGAGGCCAAGCAC CTCCGCATCACGTCTTGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 658; Mature: 658
Protein sequence:
>658_residues MKIPGQFSAQINIEVADRAYYQIGEGAQKLRIDGYAGDPRDAEGVLGLIVCDFVDGDEVQTFGKSDVSPILNPLIRFLKK ARTEEFRDSLNEVSPAFQVSDLIITTWSRVTKVKLILVSNRQYIGRDDAVKLAELGDVPVTWSVWDLARFERFDRSGQAR EDMVIDFANDFGAPLPALKASQTDAALESYLMIVPGQQLAAIYDRWGARLLEANVRSFLQARAKTNKGIQKTVKEEPELF FPYNNGLSATADEVTCVRSEEGLAIASINNLQIVNGAQTTGSIHSALKTAKEQLSHVFVQMKLTVVPPDRSEEIVPKISE YANTQNKVNAADFFSNHPFHIRIEQFSRSVIFTAREGERHDSKWFYERSRGQFINARSRLTVAQQKKFDLEFPKAQLFSK TDLAKFEYSASGHPHIVSRGAQKNFADFAREIGEAWPKSDSKYDELWYRRLIAKAIIFRRLESEVPKQDWYEGGYRANIV TYAMAKVFHDANGQKQMLDLDTIWRRQAVSDALLRALLLAAAEAHDAITHPPTGVRNMSEWAKQQACWNGLKSRTLKYGE DFGSCLALVDTVRTEEREARANTVLTEGINAQAEVVKLKAPFWNNVMEWGRAKKKLTPKDMQVLEICSSMPRRIPTDFQA KHALEVLARIREHGFDSG
Sequences:
>Translated_658_residues MKIPGQFSAQINIEVADRAYYQIGEGAQKLRIDGYAGDPRDAEGVLGLIVCDFVDGDEVQTFGKSDVSPILNPLIRFLKK ARTEEFRDSLNEVSPAFQVSDLIITTWSRVTKVKLILVSNRQYIGRDDAVKLAELGDVPVTWSVWDLARFERFDRSGQAR EDMVIDFANDFGAPLPALKASQTDAALESYLMIVPGQQLAAIYDRWGARLLEANVRSFLQARAKTNKGIQKTVKEEPELF FPYNNGLSATADEVTCVRSEEGLAIASINNLQIVNGAQTTGSIHSALKTAKEQLSHVFVQMKLTVVPPDRSEEIVPKISE YANTQNKVNAADFFSNHPFHIRIEQFSRSVIFTAREGERHDSKWFYERSRGQFINARSRLTVAQQKKFDLEFPKAQLFSK TDLAKFEYSASGHPHIVSRGAQKNFADFAREIGEAWPKSDSKYDELWYRRLIAKAIIFRRLESEVPKQDWYEGGYRANIV TYAMAKVFHDANGQKQMLDLDTIWRRQAVSDALLRALLLAAAEAHDAITHPPTGVRNMSEWAKQQACWNGLKSRTLKYGE DFGSCLALVDTVRTEEREARANTVLTEGINAQAEVVKLKAPFWNNVMEWGRAKKKLTPKDMQVLEICSSMPRRIPTDFQA KHALEVLARIREHGFDSG >Mature_658_residues MKIPGQFSAQINIEVADRAYYQIGEGAQKLRIDGYAGDPRDAEGVLGLIVCDFVDGDEVQTFGKSDVSPILNPLIRFLKK ARTEEFRDSLNEVSPAFQVSDLIITTWSRVTKVKLILVSNRQYIGRDDAVKLAELGDVPVTWSVWDLARFERFDRSGQAR EDMVIDFANDFGAPLPALKASQTDAALESYLMIVPGQQLAAIYDRWGARLLEANVRSFLQARAKTNKGIQKTVKEEPELF FPYNNGLSATADEVTCVRSEEGLAIASINNLQIVNGAQTTGSIHSALKTAKEQLSHVFVQMKLTVVPPDRSEEIVPKISE YANTQNKVNAADFFSNHPFHIRIEQFSRSVIFTAREGERHDSKWFYERSRGQFINARSRLTVAQQKKFDLEFPKAQLFSK TDLAKFEYSASGHPHIVSRGAQKNFADFAREIGEAWPKSDSKYDELWYRRLIAKAIIFRRLESEVPKQDWYEGGYRANIV TYAMAKVFHDANGQKQMLDLDTIWRRQAVSDALLRALLLAAAEAHDAITHPPTGVRNMSEWAKQQACWNGLKSRTLKYGE DFGSCLALVDTVRTEEREARANTVLTEGINAQAEVVKLKAPFWNNVMEWGRAKKKLTPKDMQVLEICSSMPRRIPTDFQA KHALEVLARIREHGFDSG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 74321; Mature: 74321
Theoretical pI: Translated: 8.19; Mature: 8.19
Prosite motif: PS00867 CPSASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIPGQFSAQINIEVADRAYYQIGEGAQKLRIDGYAGDPRDAEGVLGLIVCDFVDGDEVQ CCCCCCCCEEEEEEECCHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCCHHH TFGKSDVSPILNPLIRFLKKARTEEFRDSLNEVSPAFQVSDLIITTWSRVTKVKLILVSN HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEEEEEEC RQYIGRDDAVKLAELGDVPVTWSVWDLARFERFDRSGQAREDMVIDFANDFGAPLPALKA CCCCCCCCCCHHHHCCCCCCEEHHHHHHHHHHHCCCCCCCHHHEEEEHHHCCCCCCCCCC SQTDAALESYLMIVPGQQLAAIYDRWGARLLEANVRSFLQARAKTNKGIQKTVKEEPELF CCHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEE FPYNNGLSATADEVTCVRSEEGLAIASINNLQIVNGAQTTGSIHSALKTAKEQLSHVFVQ EECCCCCCCCCCCEEEEECCCCEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHEEEE MKLTVVPPDRSEEIVPKISEYANTQNKVNAADFFSNHPFHIRIEQFSRSVIFTAREGERH EEEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCEEEEHHHCCCEEEEEECCCCCC DSKWFYERSRGQFINARSRLTVAQQKKFDLEFPKAQLFSKTDLAKFEYSASGHPHIVSRG CCHHHHHHCCCCEECCHHHHHHHHHHCCCCCCCHHHHHCCCCHHHEEECCCCCCHHHCCC AQKNFADFAREIGEAWPKSDSKYDELWYRRLIAKAIIFRRLESEVPKQDWYEGGYRANIV CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHH TYAMAKVFHDANGQKQMLDLDTIWRRQAVSDALLRALLLAAAEAHDAITHPPTGVRNMSE HHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH WAKQQACWNGLKSRTLKYGEDFGSCLALVDTVRTEEREARANTVLTEGINAQAEVVKLKA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC PFWNNVMEWGRAKKKLTPKDMQVLEICSSMPRRIPTDFQAKHALEVLARIREHGFDSG CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MKIPGQFSAQINIEVADRAYYQIGEGAQKLRIDGYAGDPRDAEGVLGLIVCDFVDGDEVQ CCCCCCCCEEEEEEECCHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCCHHH TFGKSDVSPILNPLIRFLKKARTEEFRDSLNEVSPAFQVSDLIITTWSRVTKVKLILVSN HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEEEEEEC RQYIGRDDAVKLAELGDVPVTWSVWDLARFERFDRSGQAREDMVIDFANDFGAPLPALKA CCCCCCCCCCHHHHCCCCCCEEHHHHHHHHHHHCCCCCCCHHHEEEEHHHCCCCCCCCCC SQTDAALESYLMIVPGQQLAAIYDRWGARLLEANVRSFLQARAKTNKGIQKTVKEEPELF CCHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEE FPYNNGLSATADEVTCVRSEEGLAIASINNLQIVNGAQTTGSIHSALKTAKEQLSHVFVQ EECCCCCCCCCCCEEEEECCCCEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHEEEE MKLTVVPPDRSEEIVPKISEYANTQNKVNAADFFSNHPFHIRIEQFSRSVIFTAREGERH EEEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCEEEEHHHCCCEEEEEECCCCCC DSKWFYERSRGQFINARSRLTVAQQKKFDLEFPKAQLFSKTDLAKFEYSASGHPHIVSRG CCHHHHHHCCCCEECCHHHHHHHHHHCCCCCCCHHHHHCCCCHHHEEECCCCCCHHHCCC AQKNFADFAREIGEAWPKSDSKYDELWYRRLIAKAIIFRRLESEVPKQDWYEGGYRANIV CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHH TYAMAKVFHDANGQKQMLDLDTIWRRQAVSDALLRALLLAAAEAHDAITHPPTGVRNMSE HHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH WAKQQACWNGLKSRTLKYGEDFGSCLALVDTVRTEEREARANTVLTEGINAQAEVVKLKA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC PFWNNVMEWGRAKKKLTPKDMQVLEICSSMPRRIPTDFQAKHALEVLARIREHGFDSG CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA