| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is accA1 [H]
Identifier: 103486710
GI number: 103486710
Start: 1267078
End: 1269084
Strand: Direct
Name: accA1 [H]
Synonym: Sala_1223
Alternate gene names: 103486710
Gene position: 1267078-1269084 (Clockwise)
Preceding gene: 103486709
Following gene: 103486711
Centisome position: 37.88
GC content: 64.92
Gene sequence:
>2007_bases GTGTTCAAGAAAATCCTGATCGCCAACCGCGGCGAAATCGCCTGCCGCGTCATCAAGACCGCGCGCCGCATGGGCATCGC GACGGTCGCCGTCTATTCGGACGCCGATGCGCGCGCGCCCTTTGTCCAGATGGCTGACGAGGCGGTGCATATCGGGCCGT CGCCCGCGTCCGAATCCTATCTGGTCGCCGACAAGATCATCGCCGCGTGCAAGGCGACGGGCGCCGAGGCGGTGCATCCG GGCTATGGCTTCCTGTCCGAGCGCACCAGCTTCGCCGAGGCGCTCGCGAAGGAAAATATCGCCTTCATCGGCCCGCCGGT GAACGCGATCGCGGCGATGGGCGACAAGATCGAGTCGAAGAAGCTCGCGAAAGAGGCGGGGGTCAATGTCGTCCCCGGCT TCGTCGGCGAGATCCGCGACACCGAACATGCGGTCGAGATTTCGAACGAGATCGGCTATCCGGTGATGATGAAGGCGTCG GCGGGCGGCGGCGGCAAGGGGATGCGCCTCGCCTATGACGAGAAGGACGTCCGCGAGGGGTTCGAGGCGACCAAGCGCGA GGGGCTCAACAGCTTTGGCGACGACCGCGTGTTTATCGAGAAGTTCATCCTCAACCCGCGCCATATCGAAATCCAGATCC TCGGCGATCAGCACGGCAACATTCTCTACCTCAACGAGCGCGAATGCAGCATCCAGCGGCGGCATCAGAAGGTCGTCGAG GAAGCGCCGTCGCCCTTCGTCACGCCGAAGATGCGTCAGGCGATGGGCGAGCAGTGCGTCGCGCTGGCGCGCGCGGTCGG CTATTACAGCGCAGGCACGGTCGAGCTGATCGTGTCGGGCGCCGACCCGACGGGCGAGAGCTTCTACTTCCTCGAAATGA ACACGCGGCTGCAGGTCGAGCATCCGGTGACCGAGGCGATCACCGGCATCGACCTGGTCGAGCAGATGATCCGCGTCGCC GCGGGCGAAAAGCTGGAGATGACGCAGGACGACATCAAGATCGACGGCTGGGCGATCGAGAATCGCGTCTATGCCGAAGA TCCCTATCGCGGCTTCCTGCCCTCGACCGGGCGGCTCGTGCGCTACCGCACCCCCGTTCCCGCATGGACGGGCGACGAGC GCGGCGTCGATGGTGTGCGCGTCGATGCGGGGGTTGAGGAGGGCGGCGAGGTGTCGATCTTCTACGACCCGATGATCGCG AAGCTGGTGACATGGGGCAAGACGCGCGACGAGGCGGCGGACCTTCAGGTCGCGGCGCTCGACCGTTTCGAGATCGAGGG GCTGGGCCACAATATCGATTTCGTGTCGGCGATCATGCAGCACCCGCGCTTCCGCTCGGGCGAACTGACGACGGGCTTTA TCGCCGAGGAATATCCCGAGGGGTTCCACGGTGCCGACACCAGCGAGGATGTGACCCAGGCACTCGCCGCCATCGCGGGC TTTATGGCGAGCGCCGAAGCCGACCGCGCACGGCGCACCGACGGACAGCTCGGCGACCGGCTCGACCCGCCCGCCAAGTG GCAGGTGACCATCGGCGGCGCGAGCCACAAGGTGAAGATCGGCCGCAAGCACATCAAGGTCGATGGTGAGAAGGTCGATA TCGCGCTCGAATATACGCCGGGCGACCGGTTGGTGGTCGCCGAGATCGACGATAGCGAGCTTGCGGTGAAGGTCGCCAAA ACGCGCACCGGCTGGCGCATGACGACGCGCGGGCGCATCCATGACGTGCGCGTGCTGCCTTGGCATGTCGCACCACTCGC AAGCCATATGATCGAGAAGATCCCGCCCGACCTGTCGAAGTTTCTGATCTGCCCGATGCCCGGCTTGCTTGTCGCGCTGC ATGTGGGCGAGGGCGACAAGGTCGAGGCAGGTCAGCCGCTCGCGACGGTCGAGGCGATGAAGATGGAAAATATCCTGCGC GCCGAAAAAGCGGGCGTTGTGAAGTCGGTCAATGCAGCGCAGGGCGACAGCCTGGCGGTCGATGCCGTGATTTTGGAGAT GGAGTGA
Upstream 100 bases:
>100_bases AGGGGTTAGGGGAGGGCCTGTTCCCTCTGTGGAAGTTTCGATCTTCGTTTGCGGACAGGCCCTCCCCCGGCCCCTCCCGC AAGCGGGAGGGGAGTGAAGA
Downstream 100 bases:
>100_bases CCGCAGAATAGAAATGCCGTGCTCCCGCAAAGGCGGGAGCCCATCTTCGGTCGGTGCAAATTTGAATCCACCGGCGATGG GTCCCCGCCTTCGCGGGGAC
Product: carbamoyl-phosphate synthase L chain, ATP-binding
Products: NA
Alternate protein names: Biotin carboxylase; Biotin carboxyl carrier protein; BCCP [H]
Number of amino acids: Translated: 668; Mature: 668
Protein sequence:
>668_residues MFKKILIANRGEIACRVIKTARRMGIATVAVYSDADARAPFVQMADEAVHIGPSPASESYLVADKIIAACKATGAEAVHP GYGFLSERTSFAEALAKENIAFIGPPVNAIAAMGDKIESKKLAKEAGVNVVPGFVGEIRDTEHAVEISNEIGYPVMMKAS AGGGGKGMRLAYDEKDVREGFEATKREGLNSFGDDRVFIEKFILNPRHIEIQILGDQHGNILYLNERECSIQRRHQKVVE EAPSPFVTPKMRQAMGEQCVALARAVGYYSAGTVELIVSGADPTGESFYFLEMNTRLQVEHPVTEAITGIDLVEQMIRVA AGEKLEMTQDDIKIDGWAIENRVYAEDPYRGFLPSTGRLVRYRTPVPAWTGDERGVDGVRVDAGVEEGGEVSIFYDPMIA KLVTWGKTRDEAADLQVAALDRFEIEGLGHNIDFVSAIMQHPRFRSGELTTGFIAEEYPEGFHGADTSEDVTQALAAIAG FMASAEADRARRTDGQLGDRLDPPAKWQVTIGGASHKVKIGRKHIKVDGEKVDIALEYTPGDRLVVAEIDDSELAVKVAK TRTGWRMTTRGRIHDVRVLPWHVAPLASHMIEKIPPDLSKFLICPMPGLLVALHVGEGDKVEAGQPLATVEAMKMENILR AEKAGVVKSVNAAQGDSLAVDAVILEME
Sequences:
>Translated_668_residues MFKKILIANRGEIACRVIKTARRMGIATVAVYSDADARAPFVQMADEAVHIGPSPASESYLVADKIIAACKATGAEAVHP GYGFLSERTSFAEALAKENIAFIGPPVNAIAAMGDKIESKKLAKEAGVNVVPGFVGEIRDTEHAVEISNEIGYPVMMKAS AGGGGKGMRLAYDEKDVREGFEATKREGLNSFGDDRVFIEKFILNPRHIEIQILGDQHGNILYLNERECSIQRRHQKVVE EAPSPFVTPKMRQAMGEQCVALARAVGYYSAGTVELIVSGADPTGESFYFLEMNTRLQVEHPVTEAITGIDLVEQMIRVA AGEKLEMTQDDIKIDGWAIENRVYAEDPYRGFLPSTGRLVRYRTPVPAWTGDERGVDGVRVDAGVEEGGEVSIFYDPMIA KLVTWGKTRDEAADLQVAALDRFEIEGLGHNIDFVSAIMQHPRFRSGELTTGFIAEEYPEGFHGADTSEDVTQALAAIAG FMASAEADRARRTDGQLGDRLDPPAKWQVTIGGASHKVKIGRKHIKVDGEKVDIALEYTPGDRLVVAEIDDSELAVKVAK TRTGWRMTTRGRIHDVRVLPWHVAPLASHMIEKIPPDLSKFLICPMPGLLVALHVGEGDKVEAGQPLATVEAMKMENILR AEKAGVVKSVNAAQGDSLAVDAVILEME >Mature_668_residues MFKKILIANRGEIACRVIKTARRMGIATVAVYSDADARAPFVQMADEAVHIGPSPASESYLVADKIIAACKATGAEAVHP GYGFLSERTSFAEALAKENIAFIGPPVNAIAAMGDKIESKKLAKEAGVNVVPGFVGEIRDTEHAVEISNEIGYPVMMKAS AGGGGKGMRLAYDEKDVREGFEATKREGLNSFGDDRVFIEKFILNPRHIEIQILGDQHGNILYLNERECSIQRRHQKVVE EAPSPFVTPKMRQAMGEQCVALARAVGYYSAGTVELIVSGADPTGESFYFLEMNTRLQVEHPVTEAITGIDLVEQMIRVA AGEKLEMTQDDIKIDGWAIENRVYAEDPYRGFLPSTGRLVRYRTPVPAWTGDERGVDGVRVDAGVEEGGEVSIFYDPMIA KLVTWGKTRDEAADLQVAALDRFEIEGLGHNIDFVSAIMQHPRFRSGELTTGFIAEEYPEGFHGADTSEDVTQALAAIAG FMASAEADRARRTDGQLGDRLDPPAKWQVTIGGASHKVKIGRKHIKVDGEKVDIALEYTPGDRLVVAEIDDSELAVKVAK TRTGWRMTTRGRIHDVRVLPWHVAPLASHMIEKIPPDLSKFLICPMPGLLVALHVGEGDKVEAGQPLATVEAMKMENILR AEKAGVVKSVNAAQGDSLAVDAVILEME
Specific function: This protein carries two functions:biotin carboxyl carrier protein and biotin carboxyltransferase [H]
COG id: COG4770
COG function: function code I; Acetyl/propionyl-CoA carboxylase, alpha subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 biotinyl-binding domain [H]
Homologues:
Organism=Homo sapiens, GI189095269, Length=678, Percent_Identity=50.2949852507375, Blast_Score=642, Evalue=0.0, Organism=Homo sapiens, GI65506442, Length=678, Percent_Identity=50.2949852507375, Blast_Score=642, Evalue=0.0, Organism=Homo sapiens, GI295821183, Length=676, Percent_Identity=47.9289940828402, Blast_Score=591, Evalue=1e-169, Organism=Homo sapiens, GI116805327, Length=684, Percent_Identity=40.4970760233918, Blast_Score=483, Evalue=1e-136, Organism=Homo sapiens, GI106049528, Length=466, Percent_Identity=44.8497854077253, Blast_Score=358, Evalue=8e-99, Organism=Homo sapiens, GI106049295, Length=466, Percent_Identity=44.8497854077253, Blast_Score=358, Evalue=8e-99, Organism=Homo sapiens, GI106049292, Length=466, Percent_Identity=44.8497854077253, Blast_Score=358, Evalue=8e-99, Organism=Homo sapiens, GI38679977, Length=752, Percent_Identity=28.4574468085106, Blast_Score=251, Evalue=1e-66, Organism=Homo sapiens, GI38679967, Length=752, Percent_Identity=28.4574468085106, Blast_Score=251, Evalue=1e-66, Organism=Homo sapiens, GI38679960, Length=751, Percent_Identity=28.0958721704394, Blast_Score=251, Evalue=2e-66, Organism=Homo sapiens, GI38679971, Length=752, Percent_Identity=28.4574468085106, Blast_Score=251, Evalue=2e-66, Organism=Homo sapiens, GI38679974, Length=751, Percent_Identity=28.0958721704394, Blast_Score=251, Evalue=2e-66, Organism=Homo sapiens, GI134142062, Length=753, Percent_Identity=27.6228419654714, Blast_Score=244, Evalue=2e-64, Organism=Escherichia coli, GI1789654, Length=455, Percent_Identity=44.6153846153846, Blast_Score=377, Evalue=1e-105, Organism=Caenorhabditis elegans, GI17567343, Length=688, Percent_Identity=49.2732558139535, Blast_Score=629, Evalue=1e-180, Organism=Caenorhabditis elegans, GI71987519, Length=686, Percent_Identity=43.2944606413994, Blast_Score=478, Evalue=1e-135, Organism=Caenorhabditis elegans, GI17562816, Length=467, Percent_Identity=42.6124197002141, Blast_Score=350, Evalue=2e-96, Organism=Caenorhabditis elegans, GI133931226, Length=701, Percent_Identity=28.2453637660485, Blast_Score=231, Evalue=1e-60, Organism=Caenorhabditis elegans, GI71997168, Length=519, Percent_Identity=30.4431599229287, Blast_Score=211, Evalue=1e-54, Organism=Caenorhabditis elegans, GI71997163, Length=519, Percent_Identity=30.4431599229287, Blast_Score=211, Evalue=1e-54, Organism=Saccharomyces cerevisiae, GI6319685, Length=454, Percent_Identity=42.511013215859, Blast_Score=368, Evalue=1e-102, Organism=Saccharomyces cerevisiae, GI6319695, Length=620, Percent_Identity=36.1290322580645, Blast_Score=338, Evalue=2e-93, Organism=Saccharomyces cerevisiae, GI6321376, Length=620, Percent_Identity=36.6129032258065, Blast_Score=332, Evalue=2e-91, Organism=Saccharomyces cerevisiae, GI6323863, Length=680, Percent_Identity=30, Blast_Score=263, Evalue=5e-71, Organism=Saccharomyces cerevisiae, GI6324343, Length=741, Percent_Identity=28.3400809716599, Blast_Score=245, Evalue=2e-65, Organism=Drosophila melanogaster, GI24651757, Length=685, Percent_Identity=41.1678832116788, Blast_Score=489, Evalue=1e-138, Organism=Drosophila melanogaster, GI24651759, Length=647, Percent_Identity=39.7217928902628, Blast_Score=437, Evalue=1e-122, Organism=Drosophila melanogaster, GI24652212, Length=465, Percent_Identity=44.9462365591398, Blast_Score=352, Evalue=5e-97, Organism=Drosophila melanogaster, GI24652210, Length=465, Percent_Identity=44.9462365591398, Blast_Score=352, Evalue=5e-97, Organism=Drosophila melanogaster, GI24652214, Length=465, Percent_Identity=44.9462365591398, Blast_Score=352, Evalue=5e-97, Organism=Drosophila melanogaster, GI19921944, Length=465, Percent_Identity=44.9462365591398, Blast_Score=352, Evalue=5e-97, Organism=Drosophila melanogaster, GI24652216, Length=465, Percent_Identity=44.9462365591398, Blast_Score=352, Evalue=5e-97, Organism=Drosophila melanogaster, GI281363050, Length=465, Percent_Identity=44.9462365591398, Blast_Score=352, Evalue=6e-97, Organism=Drosophila melanogaster, GI24652224, Length=465, Percent_Identity=44.9462365591398, Blast_Score=352, Evalue=6e-97, Organism=Drosophila melanogaster, GI24652222, Length=465, Percent_Identity=44.9462365591398, Blast_Score=352, Evalue=6e-97, Organism=Drosophila melanogaster, GI24652220, Length=465, Percent_Identity=44.9462365591398, Blast_Score=352, Evalue=6e-97, Organism=Drosophila melanogaster, GI24652218, Length=465, Percent_Identity=44.9462365591398, Blast_Score=352, Evalue=6e-97, Organism=Drosophila melanogaster, GI24586458, Length=724, Percent_Identity=27.7624309392265, Blast_Score=234, Evalue=2e-61, Organism=Drosophila melanogaster, GI161076407, Length=724, Percent_Identity=27.7624309392265, Blast_Score=234, Evalue=2e-61, Organism=Drosophila melanogaster, GI24586460, Length=724, Percent_Identity=27.7624309392265, Blast_Score=234, Evalue=2e-61, Organism=Drosophila melanogaster, GI161076409, Length=724, Percent_Identity=27.7624309392265, Blast_Score=234, Evalue=2e-61,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011761 - InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR001882 - InterPro: IPR011764 - InterPro: IPR005482 - InterPro: IPR000089 - InterPro: IPR005479 - InterPro: IPR005481 - InterPro: IPR013817 - InterPro: IPR016185 - InterPro: IPR011054 - InterPro: IPR011053 [H]
Pfam domain/function: PF02785 Biotin_carb_C; PF00364 Biotin_lipoyl; PF00289 CPSase_L_chain; PF02786 CPSase_L_D2 [H]
EC number: =6.3.4.14 [H]
Molecular weight: Translated: 72742; Mature: 72742
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: PS50975 ATP_GRASP ; PS00866 CPSASE_1 ; PS00867 CPSASE_2 ; PS50979 BC ; PS50968 BIOTINYL_LIPOYL ; PS00188 BIOTIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKKILIANRGEIACRVIKTARRMGIATVAVYSDADARAPFVQMADEAVHIGPSPASESY CCCEEEEECCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHCCCEEECCCCCCCCCE LVADKIIAACKATGAEAVHPGYGFLSERTSFAEALAKENIAFIGPPVNAIAAMGDKIESK EHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHH KLAKEAGVNVVPGFVGEIRDTEHAVEISNEIGYPVMMKASAGGGGKGMRLAYDEKDVREG HHHHHCCCEECCCHHHHHCCCHHHEEHHCCCCCCEEEEECCCCCCCCCEEEECHHHHHHH FEATKREGLNSFGDDRVFIEKFILNPRHIEIQILGDQHGNILYLNERECSIQRRHQKVVE HHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHH EAPSPFVTPKMRQAMGEQCVALARAVGYYSAGTVELIVSGADPTGESFYFLEMNTRLQVE HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEECCEEEEC HPVTEAITGIDLVEQMIRVAAGEKLEMTQDDIKIDGWAIENRVYAEDPYRGFLPSTGRLV CCHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEECCEEECCEEEECCCCCCCCCCCCCEE RYRTPVPAWTGDERGVDGVRVDAGVEEGGEVSIFYDPMIAKLVTWGKTRDEAADLQVAAL EEECCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECHHHHHHHHCCCCCCHHHCEEEEEE DRFEIEGLGHNIDFVSAIMQHPRFRSGELTTGFIAEEYPEGFHGADTSEDVTQALAAIAG CCEEEECCCCCHHHHHHHHHCCCCCCCCCEECCHHHHCCCCCCCCCCHHHHHHHHHHHHH FMASAEADRARRTDGQLGDRLDPPAKWQVTIGGASHKVKIGRKHIKVDGEKVDIALEYTP HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEECCEEEEECCCEEEEEEEECC GDRLVVAEIDDSELAVKVAKTRTGWRMTTRGRIHDVRVLPWHVAPLASHMIEKIPPDLSK CCEEEEEEECCCCEEEEEEECCCCEEEEECCCEEEEEEECEEHHHHHHHHHHHCCCCHHH FLICPMPGLLVALHVGEGDKVEAGQPLATVEAMKMENILRAEKAGVVKSVNAAQGDSLAV EEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEE DAVILEME EEEEEEEC >Mature Secondary Structure MFKKILIANRGEIACRVIKTARRMGIATVAVYSDADARAPFVQMADEAVHIGPSPASESY CCCEEEEECCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHCCCEEECCCCCCCCCE LVADKIIAACKATGAEAVHPGYGFLSERTSFAEALAKENIAFIGPPVNAIAAMGDKIESK EHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHH KLAKEAGVNVVPGFVGEIRDTEHAVEISNEIGYPVMMKASAGGGGKGMRLAYDEKDVREG HHHHHCCCEECCCHHHHHCCCHHHEEHHCCCCCCEEEEECCCCCCCCCEEEECHHHHHHH FEATKREGLNSFGDDRVFIEKFILNPRHIEIQILGDQHGNILYLNERECSIQRRHQKVVE HHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHH EAPSPFVTPKMRQAMGEQCVALARAVGYYSAGTVELIVSGADPTGESFYFLEMNTRLQVE HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEECCEEEEC HPVTEAITGIDLVEQMIRVAAGEKLEMTQDDIKIDGWAIENRVYAEDPYRGFLPSTGRLV CCHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEECCEEECCEEEECCCCCCCCCCCCCEE RYRTPVPAWTGDERGVDGVRVDAGVEEGGEVSIFYDPMIAKLVTWGKTRDEAADLQVAAL EEECCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECHHHHHHHHCCCCCCHHHCEEEEEE DRFEIEGLGHNIDFVSAIMQHPRFRSGELTTGFIAEEYPEGFHGADTSEDVTQALAAIAG CCEEEECCCCCHHHHHHHHHCCCCCCCCCEECCHHHHCCCCCCCCCCHHHHHHHHHHHHH FMASAEADRARRTDGQLGDRLDPPAKWQVTIGGASHKVKIGRKHIKVDGEKVDIALEYTP HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEECCEEEEECCCEEEEEEEECC GDRLVVAEIDDSELAVKVAKTRTGWRMTTRGRIHDVRVLPWHVAPLASHMIEKIPPDLSK CCEEEEEEECCCCEEEEEEECCCCEEEEECCCEEEEEEECEEHHHHHHHHHHHCCCCHHH FLICPMPGLLVALHVGEGDKVEAGQPLATVEAMKMENILRAEKAGVVKSVNAAQGDSLAV EEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEE DAVILEME EEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]