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The map label for this gene is ygcA [C]

Identifier: 103486680

GI number: 103486680

Start: 1232850

End: 1234049

Strand: Direct

Name: ygcA [C]

Synonym: Sala_1192

Alternate gene names: 103486680

Gene position: 1232850-1234049 (Clockwise)

Preceding gene: 103486679

Following gene: 103486690

Centisome position: 36.85

GC content: 69.17

Gene sequence:

>1200_bases
ATGGGCGAAACGGTGCTGATCGATCGCATCGCCGCACGCGGCGATGGCGTGACCGGCGACGGTCGCCATGTGGCGGGCGC
CGTGCCGGGCGACCGCTTGCGCGATGACGGGATCATCATTCCGGGGCCGAACCGTGCCGAGCCGATGTGCCGCCATTTCG
GTAAATGCGGCGGCTGTCAGTTGCAGCATGTCGCCGAACCGGCGCTGGCCGGTTTCGTGCGCGACCGCGTTATCGGCGGG
CTGGAAGGGCAGGATGTGCCCTTTGGCGAGATTCTGCCGGCACTGCTCTCCGCTCCGCACAGCCGCCGCCGCGCGGCGCT
GACCGCGCTCAGGACGGGCAGACAGGTTGCCATCGGGTTCAACGCGGCGCAGAGCAACCAGATCGTCGACATGCGGATGT
GTCCGCTGCTTGCCCCGGAGTTGTTCGCGCTTGTGGCGCCGGTGCGCGAACTGCTGGCGATGATCGCGCAGCCGCGGCGC
CCGGTGAAGGTCAAGCTGCAACTGCTCGACCAGGGCGTCGAACTGATATTGGAGGGCGTGAAGGCCGAGGGGCTCGATGC
GGCGATGGCGCTGCAGGATTTCGCCGGTGCGCACAGTCTGGCGCGTTTTGCCGTCGATCAGGGCGACGGGCTCGAAATCC
TGTGGCAGCCCGATCGGCCGACGGTTCGCTTTGGCGATATAGCGGTCGAAGTGCCGCCCTTCGCCTTTCTGCAGCCGACG
GCGGCGGGGCAGGCGGCGCTCGTCGATGCCGTCGCCAGGGCCATCGGCGATGCGTCCACGGTGGCCGACCTGTTCGCGGG
TGTCGGCACCTTCGCGCTGTCGGTGCAGGCGGGACGCAAAGTCTATGCCGCCGAGGGCGCGCGCGATGCGATCGCGGCGC
TGGCGGGGGCCGCCAACCGCGCCCGCGCGCTGGTCACAACCGAGCATCGCGACCTCTTCCGCCGCCCGCTGGTGCCGACC
GAGCTCAACCGTTTCGGCGCGATCATCCTCGACCCGCCACGCGCGGGCGCCGAGGAGCAGGTGAAGCAACTCGCCGCGTC
AGCGGCGGCGGTGATCGCCTATGTCAGCTGCAATCCGGCCAGCTTTGCCCGTGATGCGAAGATACTCGTCGAGGGCGGCT
ATACGCTCGACTGGGTGCAGCCCGTCGGCCAGTTCCGATGGTCGACCCATGTGGAACTGGCCGCGCGCTTCGCCCGCTGA

Upstream 100 bases:

>100_bases
GACGCTTTCGACGCCGCGGTCGCCGCGGTGGGCTGGCATATTGCGCGCGCGGCGCATATAGGCCCCGGCCTTGTGGCCGA
CGATCTGATAAGGGACTGAC

Downstream 100 bases:

>100_bases
TCAATGCAGCACAAACCCCATGAAGGCGTGAACACTGAGCGCAAATAAGGCAAGACTGGCCAACGCGAACACCAGAAAGC
GCCACATCACGCGGTTTACC

Product: (Uracil-5)-methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MGETVLIDRIAARGDGVTGDGRHVAGAVPGDRLRDDGIIIPGPNRAEPMCRHFGKCGGCQLQHVAEPALAGFVRDRVIGG
LEGQDVPFGEILPALLSAPHSRRRAALTALRTGRQVAIGFNAAQSNQIVDMRMCPLLAPELFALVAPVRELLAMIAQPRR
PVKVKLQLLDQGVELILEGVKAEGLDAAMALQDFAGAHSLARFAVDQGDGLEILWQPDRPTVRFGDIAVEVPPFAFLQPT
AAGQAALVDAVARAIGDASTVADLFAGVGTFALSVQAGRKVYAAEGARDAIAALAGAANRARALVTTEHRDLFRRPLVPT
ELNRFGAIILDPPRAGAEEQVKQLAASAAAVIAYVSCNPASFARDAKILVEGGYTLDWVQPVGQFRWSTHVELAARFAR

Sequences:

>Translated_399_residues
MGETVLIDRIAARGDGVTGDGRHVAGAVPGDRLRDDGIIIPGPNRAEPMCRHFGKCGGCQLQHVAEPALAGFVRDRVIGG
LEGQDVPFGEILPALLSAPHSRRRAALTALRTGRQVAIGFNAAQSNQIVDMRMCPLLAPELFALVAPVRELLAMIAQPRR
PVKVKLQLLDQGVELILEGVKAEGLDAAMALQDFAGAHSLARFAVDQGDGLEILWQPDRPTVRFGDIAVEVPPFAFLQPT
AAGQAALVDAVARAIGDASTVADLFAGVGTFALSVQAGRKVYAAEGARDAIAALAGAANRARALVTTEHRDLFRRPLVPT
ELNRFGAIILDPPRAGAEEQVKQLAASAAAVIAYVSCNPASFARDAKILVEGGYTLDWVQPVGQFRWSTHVELAARFAR
>Mature_398_residues
GETVLIDRIAARGDGVTGDGRHVAGAVPGDRLRDDGIIIPGPNRAEPMCRHFGKCGGCQLQHVAEPALAGFVRDRVIGGL
EGQDVPFGEILPALLSAPHSRRRAALTALRTGRQVAIGFNAAQSNQIVDMRMCPLLAPELFALVAPVRELLAMIAQPRRP
VKVKLQLLDQGVELILEGVKAEGLDAAMALQDFAGAHSLARFAVDQGDGLEILWQPDRPTVRFGDIAVEVPPFAFLQPTA
AGQAALVDAVARAIGDASTVADLFAGVGTFALSVQAGRKVYAAEGARDAIAALAGAANRARALVTTEHRDLFRRPLVPTE
LNRFGAIILDPPRAGAEEQVKQLAASAAAVIAYVSCNPASFARDAKILVEGGYTLDWVQPVGQFRWSTHVELAARFAR

Specific function: Could Be A 23s rRNA (Uracil-5-)-Methyltransferase. [C]

COG id: COG2265

COG function: function code J; SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RNA M5U methyltransferase family [H]

Homologues:

Organism=Escherichia coli, GI1789148, Length=397, Percent_Identity=30.9823677581864, Blast_Score=133, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010280 [H]

Pfam domain/function: PF05958 tRNA_U5-meth_tr [H]

EC number: NA

Molecular weight: Translated: 42264; Mature: 42133

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGETVLIDRIAARGDGVTGDGRHVAGAVPGDRLRDDGIIIPGPNRAEPMCRHFGKCGGCQ
CCCEEEEHHHHHCCCCCCCCCCEEECCCCCCCCCCCCEEECCCCCCCHHHHHCCCCCCCC
LQHVAEPALAGFVRDRVIGGLEGQDVPFGEILPALLSAPHSRRRAALTALRTGRQVAIGF
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEE
NAAQSNQIVDMRMCPLLAPELFALVAPVRELLAMIAQPRRPVKVKLQLLDQGVELILEGV
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
KAEGLDAAMALQDFAGAHSLARFAVDQGDGLEILWQPDRPTVRFGDIAVEVPPFAFLQPT
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEECCEEEECCCCCEECCC
AAGQAALVDAVARAIGDASTVADLFAGVGTFALSVQAGRKVYAAEGARDAIAALAGAANR
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEECCCCEEEECCCHHHHHHHHHCCCHH
ARALVTTEHRDLFRRPLVPTELNRFGAIILDPPRAGAEEQVKQLAASAAAVIAYVSCNPA
CEEEEEEHHHHHHHCCCCCCCHHHCCEEEECCCCCCHHHHHHHHHHHHHHEEEEEECCCH
SFARDAKILVEGGYTLDWVQPVGQFRWSTHVELAARFAR
HHCCCCEEEEECCCEEHHHHHHHHHCCCHHHHHHHHHCC
>Mature Secondary Structure 
GETVLIDRIAARGDGVTGDGRHVAGAVPGDRLRDDGIIIPGPNRAEPMCRHFGKCGGCQ
CCEEEEHHHHHCCCCCCCCCCEEECCCCCCCCCCCCEEECCCCCCCHHHHHCCCCCCCC
LQHVAEPALAGFVRDRVIGGLEGQDVPFGEILPALLSAPHSRRRAALTALRTGRQVAIGF
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEE
NAAQSNQIVDMRMCPLLAPELFALVAPVRELLAMIAQPRRPVKVKLQLLDQGVELILEGV
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
KAEGLDAAMALQDFAGAHSLARFAVDQGDGLEILWQPDRPTVRFGDIAVEVPPFAFLQPT
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEECCEEEECCCCCEECCC
AAGQAALVDAVARAIGDASTVADLFAGVGTFALSVQAGRKVYAAEGARDAIAALAGAANR
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEECCCCEEEECCCHHHHHHHHHCCCHH
ARALVTTEHRDLFRRPLVPTELNRFGAIILDPPRAGAEEQVKQLAASAAAVIAYVSCNPA
CEEEEEEHHHHHHHCCCCCCCHHHCCEEEECCCCCCHHHHHHHHHHHHHHEEEEEECCCH
SFARDAKILVEGGYTLDWVQPVGQFRWSTHVELAARFAR
HHCCCCEEEEECCCEEHHHHHHHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA