| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yedI [H]
Identifier: 103486601
GI number: 103486601
Start: 1148501
End: 1149436
Strand: Direct
Name: yedI [H]
Synonym: Sala_1113
Alternate gene names: 103486601
Gene position: 1148501-1149436 (Clockwise)
Preceding gene: 103486600
Following gene: 103486610
Centisome position: 34.33
GC content: 64.53
Gene sequence:
>936_bases ATGCCCTCCGGCCTCTTTGCCCTGCTCGACGACGTTGCCACCATTGCCAAGGTTGCCGCGGCGAGCATCGACGACATCGG TGCCGCAGCGTCGAAAGCGGGGGTCAAGGCCGCGGGGGTGGTGGTCGACGACGCCGCGGTGACGCCGCGCTATGTGACCG GCTTTCAGCCGAACCGCGAACTGCCGATCATCTGGCGCATCGCCAAGGGGTCGATGTTCAACAAGCTGGTGCTGATCCTG CCCGCGCTGCTGCTGCTGTCGGCGGTGGCGCAATGGGCGATCACGCCGCTGCTGATGGTCGGCGGCGCCTATCTGTGTTT CGAGGGCGCCGAGAAGGTCTGGCATTCGCTCGCCGCCGACAAGCACAGCCTGGCCGAAGAAGCGGCTACCGTGATCGATC CGAACCATGAGGAGGTCATGGTCAAGGGCGCGATCCGCACCGACTTCATCCTGTCGGCCGAAATCATGGTGATCGCCCTC AACGAGGTGCTCGACGAAGCGATGCTGATGCGTACGGCAACGCTGGTTGTTGTCGCCATCGCAATCACGGTTGCGGTTTA TGGCGTTGTCGGGCTGATCGTGAAGATGGACGACATCGGGCTGCACATGGCCAGGGAAGGGCATAACGCCCGGCGCGCGA TCGGGCGCGGACTTGTCGCTTTTATGCCCAAGCTGCTCGCCACGCTGGCGACGGTCGGCACCGCGGCGATGCTGTGGGTC GGCGGCCAGATTTTCCTCCACGGCCTCGACGAATATCATATCGGCAATCTGGGCCACGGCCTGCACGATTTTGCGTATTC GGTCGCGGGCGGATTGCCCGGCGCGGGTGTGTGGGAATGGCTGATCAATGCCGGCGGCGCGGGCGTGTTCGGCCTGCTGC TGGGCGGAGTGATCGTGGCGGCACTGCATCTGGTGCCGGGAAAGAAGGAGCACTAA
Upstream 100 bases:
>100_bases ATTGCGGATGCCAAGCTGAAAACTTGCGCTTTCCTATCAATCCGTTCGACACGAACGGGTAGATGGGTCGCTCCAGACTC CTCAGAAGGACCAAGACCCT
Downstream 100 bases:
>100_bases TTTGCCCTCTCCTTCAGGGGAGGGCAGCGAGACTTGGCAGCTTGCTGCCTAGTCGCAGCCGGTGGGGGCATCGGCGTAGC GCAAGGTTTCTGGGCACCAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MPSGLFALLDDVATIAKVAAASIDDIGAAASKAGVKAAGVVVDDAAVTPRYVTGFQPNRELPIIWRIAKGSMFNKLVLIL PALLLLSAVAQWAITPLLMVGGAYLCFEGAEKVWHSLAADKHSLAEEAATVIDPNHEEVMVKGAIRTDFILSAEIMVIAL NEVLDEAMLMRTATLVVVAIAITVAVYGVVGLIVKMDDIGLHMAREGHNARRAIGRGLVAFMPKLLATLATVGTAAMLWV GGQIFLHGLDEYHIGNLGHGLHDFAYSVAGGLPGAGVWEWLINAGGAGVFGLLLGGVIVAALHLVPGKKEH
Sequences:
>Translated_311_residues MPSGLFALLDDVATIAKVAAASIDDIGAAASKAGVKAAGVVVDDAAVTPRYVTGFQPNRELPIIWRIAKGSMFNKLVLIL PALLLLSAVAQWAITPLLMVGGAYLCFEGAEKVWHSLAADKHSLAEEAATVIDPNHEEVMVKGAIRTDFILSAEIMVIAL NEVLDEAMLMRTATLVVVAIAITVAVYGVVGLIVKMDDIGLHMAREGHNARRAIGRGLVAFMPKLLATLATVGTAAMLWV GGQIFLHGLDEYHIGNLGHGLHDFAYSVAGGLPGAGVWEWLINAGGAGVFGLLLGGVIVAALHLVPGKKEH >Mature_310_residues PSGLFALLDDVATIAKVAAASIDDIGAAASKAGVKAAGVVVDDAAVTPRYVTGFQPNRELPIIWRIAKGSMFNKLVLILP ALLLLSAVAQWAITPLLMVGGAYLCFEGAEKVWHSLAADKHSLAEEAATVIDPNHEEVMVKGAIRTDFILSAEIMVIALN EVLDEAMLMRTATLVVVAIAITVAVYGVVGLIVKMDDIGLHMAREGHNARRAIGRGLVAFMPKLLATLATVGTAAMLWVG GQIFLHGLDEYHIGNLGHGLHDFAYSVAGGLPGAGVWEWLINAGGAGVFGLLLGGVIVAALHLVPGKKEH
Specific function: Unknown
COG id: COG2354
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788268, Length=273, Percent_Identity=45.0549450549451, Blast_Score=208, Evalue=3e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008526 [H]
Pfam domain/function: PF05661 DUF808 [H]
EC number: NA
Molecular weight: Translated: 32541; Mature: 32410
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSGLFALLDDVATIAKVAAASIDDIGAAASKAGVKAAGVVVDDAAVTPRYVTGFQPNRE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEECCCCCCC LPIIWRIAKGSMFNKLVLILPALLLLSAVAQWAITPLLMVGGAYLCFEGAEKVWHSLAAD CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHH KHSLAEEAATVIDPNHEEVMVKGAIRTDFILSAEIMVIALNEVLDEAMLMRTATLVVVAI HHHHHHHHHHHCCCCCHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AITVAVYGVVGLIVKMDDIGLHMAREGHNARRAIGRGLVAFMPKLLATLATVGTAAMLWV HHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH GGQIFLHGLDEYHIGNLGHGLHDFAYSVAGGLPGAGVWEWLINAGGAGVFGLLLGGVIVA CCHHEEECCCHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH ALHLVPGKKEH HHHHCCCCCCC >Mature Secondary Structure PSGLFALLDDVATIAKVAAASIDDIGAAASKAGVKAAGVVVDDAAVTPRYVTGFQPNRE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEECCCCCCC LPIIWRIAKGSMFNKLVLILPALLLLSAVAQWAITPLLMVGGAYLCFEGAEKVWHSLAAD CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHH KHSLAEEAATVIDPNHEEVMVKGAIRTDFILSAEIMVIALNEVLDEAMLMRTATLVVVAI HHHHHHHHHHHCCCCCHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AITVAVYGVVGLIVKMDDIGLHMAREGHNARRAIGRGLVAFMPKLLATLATVGTAAMLWV HHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH GGQIFLHGLDEYHIGNLGHGLHDFAYSVAGGLPGAGVWEWLINAGGAGVFGLLLGGVIVA CCHHEEECCCHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH ALHLVPGKKEH HHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 2527357; 7567469 [H]