| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486591
Identifier: 103486591
GI number: 103486591
Start: 1131983
End: 1133611
Strand: Direct
Name: 103486591
Synonym: Sala_1102
Alternate gene names: NA
Gene position: 1131983-1133611 (Clockwise)
Preceding gene: 103486590
Following gene: 103486592
Centisome position: 33.84
GC content: 69.55
Gene sequence:
>1629_bases ATGGCTATCCGCTCGCGTCTCGCATCGCTGATCCGCTGCCGCCGCGCGGGAATCAGCATCGCTGCGGCGATCGGTATGCC GATGCTGATCGGCGCGGCGGCGCTCGCGGTCGATGTCGGCTCGCTTTATCTCGACCGGCGCAAGCTTCAGGGCATCGCCG ATGCCGCGGCGCTGGCGGCGGCGGGTCGCCCCGGCGAAGAGCGCGCGGCGGTCGAGCGGATCATCGCCGCCAATTGCACC TGCGTCATCCGTATCGAGGCGCTGACCGTCGGCACCTATACCGCCGATCCGGCGCGCCCGGCCGAGGCGCGCTTCGCAGC GGGCGGGGCGGCGCCTAACGCGGTGCGGATCACGCTGTCGCAGGACCGGCCGCTGTTTTTCGGCGGCTTCCTGACAGGAC GGCCTGACAGCATCATCCGCGCGACCGCGACGGGCGCGCGGCGCGGTTATGCCGCCTTTTCGCTGGGGTCGCGCGTCGCG GCGCTGAACGGCGGCGTGGCGAATGCGCTGCTGTCGGGGCTGACCGGCAGCGAGGTCAACCTGTCGGTGATGGACTATAA CGCGCTTGCCAGCACCGACATCGACCTGCTCGCCTTTTCCGACGCCCTCAGGACCGAGATCGACGCCGATGTGCTGACCT TTGGCCAGACGCTCGACAGCCAGGTGACGCTGCCGCAGGTGGTGTCGGCGCTCGCGAGCGCTTCGAGCGGTGATGCGGCG GCGGCGCTCGAGCGGATCGCCGATACCGCCTTGCCACGCGGCCTGATCCCCTCGCGCGCGATCGACCTTGGCCCGCGCGC GTCGAGCGTCCGCGTCGATGCCGCGAACCCGGTGAGGGTCAATGCGCTGAGCCTGCTGCGCACGATGTTGCTGCTCGGCA GCGCGAACCGACAGGTCGACCTGTCGCTCGCGAGCGAACTGCCCGGCGGATCGGGGATCGACGTCGCGCTGCTGATCGGC GAACCGCCTGCGGATTCGCCGCTGATCGCCGTCACCGATACGAACGATGTGATCGTCCGCACCGCGCAGGTGCGGCTCAA AATCGATACGCGCATAGCGACACCGCTGGCGAGTGTTCGCGTCCCGCTGCTCGCCGAACTGGGCTCCGCCTCTGCGCGGA TCACCGATATCGATTGCGCCCCGAACAGCAGTGCCGCGGTGACGCTCGGCGTCGTCACGTCGCCCGCCATGGTGGCGATC GGCACGGTCGACGATGGCGATTTCGCCGACATGCGGCGCCGGCTCGACCCGATGCCCGCGCGTCTCGTCAAACTGCCGCT CGTCAGCATCGACGCGCAGGCTGAAATGACGCTGTCGGACCTCAACGAAAAGCCCGTCGCCTTTTCGCGCGGCGAGATCG ACGACGGGAGGGTGAAGACGGTGTCGAGCAGCGGGCTGGTCGCGGGCGCGGCCGAATCGCTGTCCGACGAGCTGGAGCTC GACGTCAATGTGGTGGGGCTGGGGCTCAATCTCGGCGCGCTGACCTCTGCGGTCGGCGACACGGTCGCGCTCGCTGCGCC CGTCATTGACGGTGTCCTCGGCGACCTCACCGGTCTGCTCGGTCTGCATGTCGGGCAGGCCGATACGCGGATCAATGCGC TGCGCTGCGGCCGTGCGCGGCTGGTGTGA
Upstream 100 bases:
>100_bases TCACTGCGGCCGACGACTCCTTTCTGCGATCCAGCTTCGTGCCGTCGCCCGATCATGTGATCCGCGCGCGAGCGACCTTC GAGCTGCCGGTTGATTGAGC
Downstream 100 bases:
>100_bases TGCCTCGCGCAGCGGCGCCATTTCGGACAGATTTTCGGGGCTTTTCTGTCCCATTCCGACCGAAAGCGCGGTCGTGCGCG CTATAGGAGGAATAGTGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 542; Mature: 541
Protein sequence:
>542_residues MAIRSRLASLIRCRRAGISIAAAIGMPMLIGAAALAVDVGSLYLDRRKLQGIADAAALAAAGRPGEERAAVERIIAANCT CVIRIEALTVGTYTADPARPAEARFAAGGAAPNAVRITLSQDRPLFFGGFLTGRPDSIIRATATGARRGYAAFSLGSRVA ALNGGVANALLSGLTGSEVNLSVMDYNALASTDIDLLAFSDALRTEIDADVLTFGQTLDSQVTLPQVVSALASASSGDAA AALERIADTALPRGLIPSRAIDLGPRASSVRVDAANPVRVNALSLLRTMLLLGSANRQVDLSLASELPGGSGIDVALLIG EPPADSPLIAVTDTNDVIVRTAQVRLKIDTRIATPLASVRVPLLAELGSASARITDIDCAPNSSAAVTLGVVTSPAMVAI GTVDDGDFADMRRRLDPMPARLVKLPLVSIDAQAEMTLSDLNEKPVAFSRGEIDDGRVKTVSSSGLVAGAAESLSDELEL DVNVVGLGLNLGALTSAVGDTVALAAPVIDGVLGDLTGLLGLHVGQADTRINALRCGRARLV
Sequences:
>Translated_542_residues MAIRSRLASLIRCRRAGISIAAAIGMPMLIGAAALAVDVGSLYLDRRKLQGIADAAALAAAGRPGEERAAVERIIAANCT CVIRIEALTVGTYTADPARPAEARFAAGGAAPNAVRITLSQDRPLFFGGFLTGRPDSIIRATATGARRGYAAFSLGSRVA ALNGGVANALLSGLTGSEVNLSVMDYNALASTDIDLLAFSDALRTEIDADVLTFGQTLDSQVTLPQVVSALASASSGDAA AALERIADTALPRGLIPSRAIDLGPRASSVRVDAANPVRVNALSLLRTMLLLGSANRQVDLSLASELPGGSGIDVALLIG EPPADSPLIAVTDTNDVIVRTAQVRLKIDTRIATPLASVRVPLLAELGSASARITDIDCAPNSSAAVTLGVVTSPAMVAI GTVDDGDFADMRRRLDPMPARLVKLPLVSIDAQAEMTLSDLNEKPVAFSRGEIDDGRVKTVSSSGLVAGAAESLSDELEL DVNVVGLGLNLGALTSAVGDTVALAAPVIDGVLGDLTGLLGLHVGQADTRINALRCGRARLV >Mature_541_residues AIRSRLASLIRCRRAGISIAAAIGMPMLIGAAALAVDVGSLYLDRRKLQGIADAAALAAAGRPGEERAAVERIIAANCTC VIRIEALTVGTYTADPARPAEARFAAGGAAPNAVRITLSQDRPLFFGGFLTGRPDSIIRATATGARRGYAAFSLGSRVAA LNGGVANALLSGLTGSEVNLSVMDYNALASTDIDLLAFSDALRTEIDADVLTFGQTLDSQVTLPQVVSALASASSGDAAA ALERIADTALPRGLIPSRAIDLGPRASSVRVDAANPVRVNALSLLRTMLLLGSANRQVDLSLASELPGGSGIDVALLIGE PPADSPLIAVTDTNDVIVRTAQVRLKIDTRIATPLASVRVPLLAELGSASARITDIDCAPNSSAAVTLGVVTSPAMVAIG TVDDGDFADMRRRLDPMPARLVKLPLVSIDAQAEMTLSDLNEKPVAFSRGEIDDGRVKTVSSSGLVAGAAESLSDELELD VNVVGLGLNLGALTSAVGDTVALAAPVIDGVLGDLTGLLGLHVGQADTRINALRCGRARLV
Specific function: Unknown
COG id: COG4655
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55477; Mature: 55346
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIRSRLASLIRCRRAGISIAAAIGMPMLIGAAALAVDVGSLYLDRRKLQGIADAAALAA CCHHHHHHHHHHHHHCCCEEEHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AGRPGEERAAVERIIAANCTCVIRIEALTVGTYTADPARPAEARFAAGGAAPNAVRITLS CCCCCHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCCCCCCCCEEECCCCCCCEEEEEEE QDRPLFFGGFLTGRPDSIIRATATGARRGYAAFSLGSRVAALNGGVANALLSGLTGSEVN CCCCEEEECCCCCCCCCEEEEECCCCCCCEEEEECCCEEEECCCHHHHHHHHCCCCCCEE LSVMDYNALASTDIDLLAFSDALRTEIDADVLTFGQTLDSQVTLPQVVSALASASSGDAA EEEEECCCCCCCCCEEEEECHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHH AALERIADTALPRGLIPSRAIDLGPRASSVRVDAANPVRVNALSLLRTMLLLGSANRQVD HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHHCCCCCEEE LSLASELPGGSGIDVALLIGEPPADSPLIAVTDTNDVIVRTAQVRLKIDTRIATPLASVR EEEHHCCCCCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEEEEEEEEECHHHCCHHHHH VPLLAELGSASARITDIDCAPNSSAAVTLGVVTSPAMVAIGTVDDGDFADMRRRLDPMPA HHHHHHCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHCCCCCH RLVKLPLVSIDAQAEMTLSDLNEKPVAFSRGEIDDGRVKTVSSSGLVAGAAESLSDELEL HHHEECEEEECCCCCCHHHHCCCCCCEEECCCCCCCCEEEEECCCCEECCHHHCCCCCEE DVNVVGLGLNLGALTSAVGDTVALAAPVIDGVLGDLTGLLGLHVGQADTRINALRCGRAR EEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCC LV CC >Mature Secondary Structure AIRSRLASLIRCRRAGISIAAAIGMPMLIGAAALAVDVGSLYLDRRKLQGIADAAALAA CHHHHHHHHHHHHHCCCEEEHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AGRPGEERAAVERIIAANCTCVIRIEALTVGTYTADPARPAEARFAAGGAAPNAVRITLS CCCCCHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCCCCCCCCEEECCCCCCCEEEEEEE QDRPLFFGGFLTGRPDSIIRATATGARRGYAAFSLGSRVAALNGGVANALLSGLTGSEVN CCCCEEEECCCCCCCCCEEEEECCCCCCCEEEEECCCEEEECCCHHHHHHHHCCCCCCEE LSVMDYNALASTDIDLLAFSDALRTEIDADVLTFGQTLDSQVTLPQVVSALASASSGDAA EEEEECCCCCCCCCEEEEECHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHH AALERIADTALPRGLIPSRAIDLGPRASSVRVDAANPVRVNALSLLRTMLLLGSANRQVD HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHHCCCCCEEE LSLASELPGGSGIDVALLIGEPPADSPLIAVTDTNDVIVRTAQVRLKIDTRIATPLASVR EEEHHCCCCCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEEEEEEEEECHHHCCHHHHH VPLLAELGSASARITDIDCAPNSSAAVTLGVVTSPAMVAIGTVDDGDFADMRRRLDPMPA HHHHHHCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHCCCCCH RLVKLPLVSIDAQAEMTLSDLNEKPVAFSRGEIDDGRVKTVSSSGLVAGAAESLSDELEL HHHEECEEEECCCCCCHHHHCCCCCCEEECCCCCCCCEEEEECCCCEECCHHHCCCCCEE DVNVVGLGLNLGALTSAVGDTVALAAPVIDGVLGDLTGLLGLHVGQADTRINALRCGRAR EEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCC LV CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA