Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is yghU [H]

Identifier: 103486589

GI number: 103486589

Start: 1130492

End: 1131373

Strand: Direct

Name: yghU [H]

Synonym: Sala_1100

Alternate gene names: 103486589

Gene position: 1130492-1131373 (Clockwise)

Preceding gene: 103486588

Following gene: 103486590

Centisome position: 33.79

GC content: 64.29

Gene sequence:

>882_bases
ATGACCGACACCAGCGAATATGTGCCGCCGAAAATCTGGACCTGGGACAAGGAAAGCGGCGGGCGTTTCGCCAATATCAA
TCGTCCCGTCGCCGGACCGACGCACGACAGGGACCTGCCCGTCGGCAGGCATCCGCTCCAGCTCTATTCGCTCGGCACGC
CCAATGGGGTGAAGGTGACGGTGATGCTGGAGGAACTGCTCGCCGCGGGGCACAGCGGCGCCGAATATGACGCCTGGCTG
ATCAACATCGGCGAGGGCGACCAGTTTTCGAGCGGTTTCGTCGCGATCAATCCGAACAGCAAGATCCCCGCGCTCGTCGA
CCGCAGCGGTGCCGAGCCGATCCGCGTCTTTGAATCGGGCGCGATCCTGATTCATCTGGCCGAAAAGTTCGGCGCCTTCC
TGCCGACCGACACCGCCGGGCGCGCCGAAACGCTGTCGTGGCTGATGTGGCAGATGGGCAGCGCGCCGTTCCTCGGCGGC
GGCTTCGGGCACTTCTATGCCTACGCGCCGACCAAGCAGGAATATCCGATCAACCGCTATGCGATGGAAGTGAAGCGCCA
GCTCGACGTGCTCGACCGGCGGCTTGCGGAGAGCGAGTTTATCGCCGGCGCCGATTATACGATCGCCGACATGGCGATCT
GGCCCTGGTATGGCGCGCTCGTGAAGGGGCTGGTCTATGATGCGGGCGAGTTCCTGCAGGTGCAGGAATACAAGAATGTC
CTGCGCTGGACCGACCAGCTTGCCGCGCGCCCGGCGGTGAAGCGCGGGCGGATGGTCAACCGCGTGACCGGCGATCCGGC
GAGCCAGCTTCGCGAGCGCCACGACGCATCGGATTTCGATCTGCGCACGCAGGACAAGCTCGAAGCGGCGGATAATGTGT
GA

Upstream 100 bases:

>100_bases
TTGCGCGCAGCAAATATAATTTGATCGGGCGTGGGTGGACAGCGCAAGCGCGGTCACTTACGTTACCGTTCGGTATAAAA
ATCAGCCAAGGAGCCTCGCG

Downstream 100 bases:

>100_bases
TTTGCGCAGGGCGCGCCATTGCGTTCATTAGCATTCCGGTAAAGCTTCGCGATTTCCGGCCGATTGCGCCGTTCGTCGCG
GGCTGAACTTTGTGTAAATT

Product: putative glutathione S-transferase YghU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MTDTSEYVPPKIWTWDKESGGRFANINRPVAGPTHDRDLPVGRHPLQLYSLGTPNGVKVTVMLEELLAAGHSGAEYDAWL
INIGEGDQFSSGFVAINPNSKIPALVDRSGAEPIRVFESGAILIHLAEKFGAFLPTDTAGRAETLSWLMWQMGSAPFLGG
GFGHFYAYAPTKQEYPINRYAMEVKRQLDVLDRRLAESEFIAGADYTIADMAIWPWYGALVKGLVYDAGEFLQVQEYKNV
LRWTDQLAARPAVKRGRMVNRVTGDPASQLRERHDASDFDLRTQDKLEAADNV

Sequences:

>Translated_293_residues
MTDTSEYVPPKIWTWDKESGGRFANINRPVAGPTHDRDLPVGRHPLQLYSLGTPNGVKVTVMLEELLAAGHSGAEYDAWL
INIGEGDQFSSGFVAINPNSKIPALVDRSGAEPIRVFESGAILIHLAEKFGAFLPTDTAGRAETLSWLMWQMGSAPFLGG
GFGHFYAYAPTKQEYPINRYAMEVKRQLDVLDRRLAESEFIAGADYTIADMAIWPWYGALVKGLVYDAGEFLQVQEYKNV
LRWTDQLAARPAVKRGRMVNRVTGDPASQLRERHDASDFDLRTQDKLEAADNV
>Mature_292_residues
TDTSEYVPPKIWTWDKESGGRFANINRPVAGPTHDRDLPVGRHPLQLYSLGTPNGVKVTVMLEELLAAGHSGAEYDAWLI
NIGEGDQFSSGFVAINPNSKIPALVDRSGAEPIRVFESGAILIHLAEKFGAFLPTDTAGRAETLSWLMWQMGSAPFLGGG
FGHFYAYAPTKQEYPINRYAMEVKRQLDVLDRRLAESEFIAGADYTIADMAIWPWYGALVKGLVYDAGEFLQVQEYKNVL
RWTDQLAARPAVKRGRMVNRVTGDPASQLRERHDASDFDLRTQDKLEAADNV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GST N-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI87082195, Length=286, Percent_Identity=68.8811188811189, Blast_Score=417, Evalue=1e-118,
Organism=Escherichia coli, GI1788640, Length=213, Percent_Identity=42.2535211267606, Blast_Score=155, Evalue=3e-39,
Organism=Saccharomyces cerevisiae, GI6324100, Length=255, Percent_Identity=29.4117647058824, Blast_Score=97, Evalue=3e-21,
Organism=Drosophila melanogaster, GI28571670, Length=178, Percent_Identity=30.3370786516854, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI17864592, Length=212, Percent_Identity=29.2452830188679, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17864598, Length=184, Percent_Identity=30.4347826086957, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI17864594, Length=182, Percent_Identity=30.2197802197802, Blast_Score=68, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010987
- InterPro:   IPR004045
- InterPro:   IPR017933
- InterPro:   IPR004046
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00043 GST_C; PF02798 GST_N [H]

EC number: NA

Molecular weight: Translated: 32576; Mature: 32445

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTSEYVPPKIWTWDKESGGRFANINRPVAGPTHDRDLPVGRHPLQLYSLGTPNGVKVT
CCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEE
VMLEELLAAGHSGAEYDAWLINIGEGDQFSSGFVAINPNSKIPALVDRSGAEPIRVFESG
EEHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCHHCCCCCCCCEEEECCC
AILIHLAEKFGAFLPTDTAGRAETLSWLMWQMGSAPFLGGGFGHFYAYAPTKQEYPINRY
EEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHEEEECCCCCCCCHHHH
AMEVKRQLDVLDRRLAESEFIAGADYTIADMAIWPWYGALVKGLVYDAGEFLQVQEYKNV
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHHHH
LRWTDQLAARPAVKRGRMVNRVTGDPASQLRERHDASDFDLRTQDKLEAADNV
HHHHHHHHHCHHHHHCCEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHCCCC
>Mature Secondary Structure 
TDTSEYVPPKIWTWDKESGGRFANINRPVAGPTHDRDLPVGRHPLQLYSLGTPNGVKVT
CCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEE
VMLEELLAAGHSGAEYDAWLINIGEGDQFSSGFVAINPNSKIPALVDRSGAEPIRVFESG
EEHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCHHCCCCCCCCEEEECCC
AILIHLAEKFGAFLPTDTAGRAETLSWLMWQMGSAPFLGGGFGHFYAYAPTKQEYPINRY
EEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHEEEECCCCCCCCHHHH
AMEVKRQLDVLDRRLAESEFIAGADYTIADMAIWPWYGALVKGLVYDAGEFLQVQEYKNV
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHHHH
LRWTDQLAARPAVKRGRMVNRVTGDPASQLRERHDASDFDLRTQDKLEAADNV
HHHHHHHHHCHHHHHCCEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]