| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yghU [H]
Identifier: 103486589
GI number: 103486589
Start: 1130492
End: 1131373
Strand: Direct
Name: yghU [H]
Synonym: Sala_1100
Alternate gene names: 103486589
Gene position: 1130492-1131373 (Clockwise)
Preceding gene: 103486588
Following gene: 103486590
Centisome position: 33.79
GC content: 64.29
Gene sequence:
>882_bases ATGACCGACACCAGCGAATATGTGCCGCCGAAAATCTGGACCTGGGACAAGGAAAGCGGCGGGCGTTTCGCCAATATCAA TCGTCCCGTCGCCGGACCGACGCACGACAGGGACCTGCCCGTCGGCAGGCATCCGCTCCAGCTCTATTCGCTCGGCACGC CCAATGGGGTGAAGGTGACGGTGATGCTGGAGGAACTGCTCGCCGCGGGGCACAGCGGCGCCGAATATGACGCCTGGCTG ATCAACATCGGCGAGGGCGACCAGTTTTCGAGCGGTTTCGTCGCGATCAATCCGAACAGCAAGATCCCCGCGCTCGTCGA CCGCAGCGGTGCCGAGCCGATCCGCGTCTTTGAATCGGGCGCGATCCTGATTCATCTGGCCGAAAAGTTCGGCGCCTTCC TGCCGACCGACACCGCCGGGCGCGCCGAAACGCTGTCGTGGCTGATGTGGCAGATGGGCAGCGCGCCGTTCCTCGGCGGC GGCTTCGGGCACTTCTATGCCTACGCGCCGACCAAGCAGGAATATCCGATCAACCGCTATGCGATGGAAGTGAAGCGCCA GCTCGACGTGCTCGACCGGCGGCTTGCGGAGAGCGAGTTTATCGCCGGCGCCGATTATACGATCGCCGACATGGCGATCT GGCCCTGGTATGGCGCGCTCGTGAAGGGGCTGGTCTATGATGCGGGCGAGTTCCTGCAGGTGCAGGAATACAAGAATGTC CTGCGCTGGACCGACCAGCTTGCCGCGCGCCCGGCGGTGAAGCGCGGGCGGATGGTCAACCGCGTGACCGGCGATCCGGC GAGCCAGCTTCGCGAGCGCCACGACGCATCGGATTTCGATCTGCGCACGCAGGACAAGCTCGAAGCGGCGGATAATGTGT GA
Upstream 100 bases:
>100_bases TTGCGCGCAGCAAATATAATTTGATCGGGCGTGGGTGGACAGCGCAAGCGCGGTCACTTACGTTACCGTTCGGTATAAAA ATCAGCCAAGGAGCCTCGCG
Downstream 100 bases:
>100_bases TTTGCGCAGGGCGCGCCATTGCGTTCATTAGCATTCCGGTAAAGCTTCGCGATTTCCGGCCGATTGCGCCGTTCGTCGCG GGCTGAACTTTGTGTAAATT
Product: putative glutathione S-transferase YghU
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MTDTSEYVPPKIWTWDKESGGRFANINRPVAGPTHDRDLPVGRHPLQLYSLGTPNGVKVTVMLEELLAAGHSGAEYDAWL INIGEGDQFSSGFVAINPNSKIPALVDRSGAEPIRVFESGAILIHLAEKFGAFLPTDTAGRAETLSWLMWQMGSAPFLGG GFGHFYAYAPTKQEYPINRYAMEVKRQLDVLDRRLAESEFIAGADYTIADMAIWPWYGALVKGLVYDAGEFLQVQEYKNV LRWTDQLAARPAVKRGRMVNRVTGDPASQLRERHDASDFDLRTQDKLEAADNV
Sequences:
>Translated_293_residues MTDTSEYVPPKIWTWDKESGGRFANINRPVAGPTHDRDLPVGRHPLQLYSLGTPNGVKVTVMLEELLAAGHSGAEYDAWL INIGEGDQFSSGFVAINPNSKIPALVDRSGAEPIRVFESGAILIHLAEKFGAFLPTDTAGRAETLSWLMWQMGSAPFLGG GFGHFYAYAPTKQEYPINRYAMEVKRQLDVLDRRLAESEFIAGADYTIADMAIWPWYGALVKGLVYDAGEFLQVQEYKNV LRWTDQLAARPAVKRGRMVNRVTGDPASQLRERHDASDFDLRTQDKLEAADNV >Mature_292_residues TDTSEYVPPKIWTWDKESGGRFANINRPVAGPTHDRDLPVGRHPLQLYSLGTPNGVKVTVMLEELLAAGHSGAEYDAWLI NIGEGDQFSSGFVAINPNSKIPALVDRSGAEPIRVFESGAILIHLAEKFGAFLPTDTAGRAETLSWLMWQMGSAPFLGGG FGHFYAYAPTKQEYPINRYAMEVKRQLDVLDRRLAESEFIAGADYTIADMAIWPWYGALVKGLVYDAGEFLQVQEYKNVL RWTDQLAARPAVKRGRMVNRVTGDPASQLRERHDASDFDLRTQDKLEAADNV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 GST N-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI87082195, Length=286, Percent_Identity=68.8811188811189, Blast_Score=417, Evalue=1e-118, Organism=Escherichia coli, GI1788640, Length=213, Percent_Identity=42.2535211267606, Blast_Score=155, Evalue=3e-39, Organism=Saccharomyces cerevisiae, GI6324100, Length=255, Percent_Identity=29.4117647058824, Blast_Score=97, Evalue=3e-21, Organism=Drosophila melanogaster, GI28571670, Length=178, Percent_Identity=30.3370786516854, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI17864592, Length=212, Percent_Identity=29.2452830188679, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI17864598, Length=184, Percent_Identity=30.4347826086957, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI17864594, Length=182, Percent_Identity=30.2197802197802, Blast_Score=68, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010987 - InterPro: IPR004045 - InterPro: IPR017933 - InterPro: IPR004046 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00043 GST_C; PF02798 GST_N [H]
EC number: NA
Molecular weight: Translated: 32576; Mature: 32445
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTSEYVPPKIWTWDKESGGRFANINRPVAGPTHDRDLPVGRHPLQLYSLGTPNGVKVT CCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEE VMLEELLAAGHSGAEYDAWLINIGEGDQFSSGFVAINPNSKIPALVDRSGAEPIRVFESG EEHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCHHCCCCCCCCEEEECCC AILIHLAEKFGAFLPTDTAGRAETLSWLMWQMGSAPFLGGGFGHFYAYAPTKQEYPINRY EEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHEEEECCCCCCCCHHHH AMEVKRQLDVLDRRLAESEFIAGADYTIADMAIWPWYGALVKGLVYDAGEFLQVQEYKNV HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHHHH LRWTDQLAARPAVKRGRMVNRVTGDPASQLRERHDASDFDLRTQDKLEAADNV HHHHHHHHHCHHHHHCCEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHCCCC >Mature Secondary Structure TDTSEYVPPKIWTWDKESGGRFANINRPVAGPTHDRDLPVGRHPLQLYSLGTPNGVKVT CCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEE VMLEELLAAGHSGAEYDAWLINIGEGDQFSSGFVAINPNSKIPALVDRSGAEPIRVFESG EEHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCHHCCCCCCCCEEEECCC AILIHLAEKFGAFLPTDTAGRAETLSWLMWQMGSAPFLGGGFGHFYAYAPTKQEYPINRY EEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHEEEECCCCCCCCHHHH AMEVKRQLDVLDRRLAESEFIAGADYTIADMAIWPWYGALVKGLVYDAGEFLQVQEYKNV HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHHHH LRWTDQLAARPAVKRGRMVNRVTGDPASQLRERHDASDFDLRTQDKLEAADNV HHHHHHHHHCHHHHHCCEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]