| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486560
Identifier: 103486560
GI number: 103486560
Start: 1103376
End: 1103789
Strand: Direct
Name: 103486560
Synonym: Sala_1071
Alternate gene names: NA
Gene position: 1103376-1103789 (Clockwise)
Preceding gene: 103486558
Following gene: 103486561
Centisome position: 32.98
GC content: 67.15
Gene sequence:
>414_bases ATGACAGCGGGTGCGGTGGCTGCGCTGGCGGCGGCAACATGGCTGGCGCGCGAGCCGATCGCGGACGAGTTCATTCGCAG CCAGCTTGAAAGCCGCGCCGTTCCCGCGCAATATCGCATCGACGCGATCGGTTTTCGCAGCGAAAGACTGTCGAACATCG TGATCGGCGATCCCGCACGCCCCGACCTGACCGCCGCAACGGTCGAGGTGCTGCTCGGCTATGGCCTGGCTGGCCCCTAT GTGTCGGAGATCCGCGCCGAAGGCGTGCGCCTCCATGGTCGTTTTGTCGATGGCCGCCTGTCGTTCGGGGTGCTCGACAG GTTCCGCGACCCCGAAAGCACCGACCCCTTTGCCTTGCCCGACATGGCCGTGATCTTGCGCGACGCGCGCGCGCGTCGAG ACGCCGTGGGGTGA
Upstream 100 bases:
>100_bases AGCAGGTGCCCGCCTTTTCACGAGCGATGACGTGACGGGGGGTGATTCGTCGACACGGCGTGGATGGCATCGCGGGAAAC TGCTGTTCAGGAAGCGCTGG
Downstream 100 bases:
>100_bases TGTCGGTGCGGCGCTGAACGGTTCGGGCAATCTGCGCGACAATTTTGCCGGCAGGCTCGCGCTCGTCGCTCCGGAGCTGT CTGCGGCGGGATGCAATGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 137; Mature: 136
Protein sequence:
>137_residues MTAGAVAALAAATWLAREPIADEFIRSQLESRAVPAQYRIDAIGFRSERLSNIVIGDPARPDLTAATVEVLLGYGLAGPY VSEIRAEGVRLHGRFVDGRLSFGVLDRFRDPESTDPFALPDMAVILRDARARRDAVG
Sequences:
>Translated_137_residues MTAGAVAALAAATWLAREPIADEFIRSQLESRAVPAQYRIDAIGFRSERLSNIVIGDPARPDLTAATVEVLLGYGLAGPY VSEIRAEGVRLHGRFVDGRLSFGVLDRFRDPESTDPFALPDMAVILRDARARRDAVG >Mature_136_residues TAGAVAALAAATWLAREPIADEFIRSQLESRAVPAQYRIDAIGFRSERLSNIVIGDPARPDLTAATVEVLLGYGLAGPYV SEIRAEGVRLHGRFVDGRLSFGVLDRFRDPESTDPFALPDMAVILRDARARRDAVG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14851; Mature: 14720
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAGAVAALAAATWLAREPIADEFIRSQLESRAVPAQYRIDAIGFRSERLSNIVIGDPAR CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHCEEEECCCCC PDLTAATVEVLLGYGLAGPYVSEIRAEGVRLHGRFVDGRLSFGVLDRFRDPESTDPFALP CCHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEEECCCCCHHHHHHCCCCCCCCCCCCC DMAVILRDARARRDAVG HHHHHHHHHHHHHCCCC >Mature Secondary Structure TAGAVAALAAATWLAREPIADEFIRSQLESRAVPAQYRIDAIGFRSERLSNIVIGDPAR CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHCEEEECCCCC PDLTAATVEVLLGYGLAGPYVSEIRAEGVRLHGRFVDGRLSFGVLDRFRDPESTDPFALP CCHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEEECCCCCHHHHHHCCCCCCCCCCCCC DMAVILRDARARRDAVG HHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA