Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486520

Identifier: 103486520

GI number: 103486520

Start: 1065202

End: 1066893

Strand: Reverse

Name: 103486520

Synonym: Sala_1031

Alternate gene names: NA

Gene position: 1066893-1065202 (Counterclockwise)

Preceding gene: 103486525

Following gene: 103486519

Centisome position: 31.89

GC content: 61.94

Gene sequence:

>1692_bases
ATGCCTATCCCCCCCCCGCTCAAGGTCGCCGGCCTTGCCGCGCTGGCGTTGCTCGCCGCGTGCAACGGCAGCGCCGACCC
ACAGAAAAATGCCGCCACCGCGATCCCCGATGTCGAGATTCCCCAACTATCGCTCGCAACCTTGCAGGAAGTAACGAGAG
AATTGTCGTCCGACGCCTATGAAGGGCGTGCGCCCGGCACCGCGGGCGAAGAAAAGACCGTCGCCTACATCATCAAGAAA
TACAGGGAAGCGGGCTTGCAGCCCGGCAACAACGGCCGCTGGACACAGGACGTGCCGCTGGTTGAAATCACCGCGAAGAA
CGCCACCCCGCTGACCTTCACCGGCGGCAAGACGCCCGTGACGGCACAATATGCCAAGGATTATGTCGCGTTCAGCTACC
GCGTCCAGCCGAGGACCGAAGTCAAGGACAGCGACGTCGTGTTCGTGGGATATGGCATCAATGCCCCCGAAAAGGGCTGG
AACGACTATGCCGGGCTGGATGTGAAGGGCAAGACGGTCGTTGTCCTGGTGAACGATCCCGACTGGGAAAACAGGGAAAC
CGAAGGCCCGTTCAACGGCCGCGCCATGACCTATTACGGCCGCTGGTCATACAAATATGAGGAAGCTGCGCGGCAGGGAG
CCGCCGCCGTGCTGATCGTTCACGACACCGAGCCTGCCGCCTATGGCTGGAACGTCGTCGAATCGAGCAATACGGGCACG
CAATATCTGGCCGAAAGCAAGAATGGCGGCGCCGACCAAACGATTGCCAATGGCTGGATCCAGTTGGCCAAGGCGAAGGA
ACTCTTCGCAAGCGCGGGACAGGATTTCGACAAGCTGCGCGAGGCGGCGAAACAAAAGGGGTTCAAGCCCGTGCCGCTGG
CCGGGGTGAAGGCGAGCTTTGCCTTCGACAATGACATCGCCAAGAAAATGTCGCGCAACGTCATCGGTGTGCTGCCGGGC
GCCAAGCGGCCCGACGAATATGTGCTTTACACGGGTCATTGGGATCATCTGGGCCGCTGCACGCCCGTCGACGGCGACGA
CATCTGCAACGGCGCGGTCGACAATGCGAGCGGTATCGCAGGGCTCGTGACGCTGGCGAAGGCGTTCAAGCAGGCGGGCG
CGCCCGATCGCAGCATCGTCTTTCTTGCCGTCACCGCCGAGGAATCGGGCCTGCTCGGATCGAAATACTACGCCGAAAAC
CCGGTCTTCCCATTGTCGCAGACGGTCGGCGGCGTGAATATGGATGCGCTGAACGCGGTCGGGCCGGCGAAGGACATCGT
CGTGGTCGGGGCCGGCAAGTCCGAACTTGACGCCTATGTCGAGAAACTCGCCCGGATGGAGGGTCGCACGGTCAAGCCCG
AACCGACCCCCGAAAAGGGTTTCTATTACCGGTCGGATCATTTCAGCTTCGCCAAGCTGGGCGTCCCGATGTTCAATTTC
GGCAGCGGCGACGATCTGGTCGATGGCGGCGTCGAGGCGGGTCAGAAAGCGGCCGAAGACTATGAAAAGAATCGCTATCA
CGCCCCCGACGACGAATATGAGGCGATCACCAACTGGGAGGGCATGATGTCGGACCTGCGCCTCTATTATGCGGCGGGGC
GGATGCTCGCGATGACCGATGCGTGGCCGAACTGGAACGAAGGCGACGAGTTCCGCGCCGCCCGCGACAAGTCGCGCGCC
GCAGCAAAATAA

Upstream 100 bases:

>100_bases
TCGCGCCCGTTTGGGGGGCAGCGGACGTTGCCGGCGCTTGATAGTTGCACCGTCGCTCGCGCTCTGGCAGGGTCGTAACA
TTATTACAAAGAGGAGCCTT

Downstream 100 bases:

>100_bases
TCCGGAAAGCGCGCGCCCATGACGCTGAGAATGCCTGCCGAATGGGCGCCGCACAGGGCCGTCTGGATCGGTTTCCCGCA
CCTCGCTGAGGAGTGGGCGG

Product: peptidase M28

Products: NA

Alternate protein names: Aminopeptidase; Peptidase; M28 Family Peptidase; Peptidase Family M; Glutamate Carboxypeptidase II; M20/M25/M40 Family Peptidase; Aminopeptidase Family; M28 Family Aminopeptidase; M23B Family Peptidase; Aminopeptidase Y; Component Of l Biopolymer Transport System; WD40-Like Beta Propeller; PDZ Domain-Containing Protein

Number of amino acids: Translated: 563; Mature: 562

Protein sequence:

>563_residues
MPIPPPLKVAGLAALALLAACNGSADPQKNAATAIPDVEIPQLSLATLQEVTRELSSDAYEGRAPGTAGEEKTVAYIIKK
YREAGLQPGNNGRWTQDVPLVEITAKNATPLTFTGGKTPVTAQYAKDYVAFSYRVQPRTEVKDSDVVFVGYGINAPEKGW
NDYAGLDVKGKTVVVLVNDPDWENRETEGPFNGRAMTYYGRWSYKYEEAARQGAAAVLIVHDTEPAAYGWNVVESSNTGT
QYLAESKNGGADQTIANGWIQLAKAKELFASAGQDFDKLREAAKQKGFKPVPLAGVKASFAFDNDIAKKMSRNVIGVLPG
AKRPDEYVLYTGHWDHLGRCTPVDGDDICNGAVDNASGIAGLVTLAKAFKQAGAPDRSIVFLAVTAEESGLLGSKYYAEN
PVFPLSQTVGGVNMDALNAVGPAKDIVVVGAGKSELDAYVEKLARMEGRTVKPEPTPEKGFYYRSDHFSFAKLGVPMFNF
GSGDDLVDGGVEAGQKAAEDYEKNRYHAPDDEYEAITNWEGMMSDLRLYYAAGRMLAMTDAWPNWNEGDEFRAARDKSRA
AAK

Sequences:

>Translated_563_residues
MPIPPPLKVAGLAALALLAACNGSADPQKNAATAIPDVEIPQLSLATLQEVTRELSSDAYEGRAPGTAGEEKTVAYIIKK
YREAGLQPGNNGRWTQDVPLVEITAKNATPLTFTGGKTPVTAQYAKDYVAFSYRVQPRTEVKDSDVVFVGYGINAPEKGW
NDYAGLDVKGKTVVVLVNDPDWENRETEGPFNGRAMTYYGRWSYKYEEAARQGAAAVLIVHDTEPAAYGWNVVESSNTGT
QYLAESKNGGADQTIANGWIQLAKAKELFASAGQDFDKLREAAKQKGFKPVPLAGVKASFAFDNDIAKKMSRNVIGVLPG
AKRPDEYVLYTGHWDHLGRCTPVDGDDICNGAVDNASGIAGLVTLAKAFKQAGAPDRSIVFLAVTAEESGLLGSKYYAEN
PVFPLSQTVGGVNMDALNAVGPAKDIVVVGAGKSELDAYVEKLARMEGRTVKPEPTPEKGFYYRSDHFSFAKLGVPMFNF
GSGDDLVDGGVEAGQKAAEDYEKNRYHAPDDEYEAITNWEGMMSDLRLYYAAGRMLAMTDAWPNWNEGDEFRAARDKSRA
AAK
>Mature_562_residues
PIPPPLKVAGLAALALLAACNGSADPQKNAATAIPDVEIPQLSLATLQEVTRELSSDAYEGRAPGTAGEEKTVAYIIKKY
REAGLQPGNNGRWTQDVPLVEITAKNATPLTFTGGKTPVTAQYAKDYVAFSYRVQPRTEVKDSDVVFVGYGINAPEKGWN
DYAGLDVKGKTVVVLVNDPDWENRETEGPFNGRAMTYYGRWSYKYEEAARQGAAAVLIVHDTEPAAYGWNVVESSNTGTQ
YLAESKNGGADQTIANGWIQLAKAKELFASAGQDFDKLREAAKQKGFKPVPLAGVKASFAFDNDIAKKMSRNVIGVLPGA
KRPDEYVLYTGHWDHLGRCTPVDGDDICNGAVDNASGIAGLVTLAKAFKQAGAPDRSIVFLAVTAEESGLLGSKYYAENP
VFPLSQTVGGVNMDALNAVGPAKDIVVVGAGKSELDAYVEKLARMEGRTVKPEPTPEKGFYYRSDHFSFAKLGVPMFNFG
SGDDLVDGGVEAGQKAAEDYEKNRYHAPDDEYEAITNWEGMMSDLRLYYAAGRMLAMTDAWPNWNEGDEFRAARDKSRAA
AK

Specific function: Unknown

COG id: COG2234

COG function: function code R; Predicted aminopeptidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60823; Mature: 60691

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIPPPLKVAGLAALALLAACNGSADPQKNAATAIPDVEIPQLSLATLQEVTRELSSDAY
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
EGRAPGTAGEEKTVAYIIKKYREAGLQPGNNGRWTQDVPLVEITAKNATPLTFTGGKTPV
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCE
TAQYAKDYVAFSYRVQPRTEVKDSDVVFVGYGINAPEKGWNDYAGLDVKGKTVVVLVNDP
EHHHHCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEECCCEEEEEECCC
DWENRETEGPFNGRAMTYYGRWSYKYEEAARQGAAAVLIVHDTEPAAYGWNVVESSNTGT
CCCCCCCCCCCCCCEEEEEECCCEEHHHHHHCCCEEEEEEECCCCCCCCCEEEECCCCCH
QYLAESKNGGADQTIANGWIQLAKAKELFASAGQDFDKLREAAKQKGFKPVPLAGVKASF
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEE
AFDNDIAKKMSRNVIGVLPGAKRPDEYVLYTGHWDHLGRCTPVDGDDICNGAVDNASGIA
ECCHHHHHHHHCCEEEECCCCCCCCCEEEEECCHHHCCCCCCCCCHHHCCCCCCCCCHHH
GLVTLAKAFKQAGAPDRSIVFLAVTAEESGLLGSKYYAENPVFPLSQTVGGVNMDALNAV
HHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHCCCCCCCHHHHCCCCCHHHHHCC
GPAKDIVVVGAGKSELDAYVEKLARMEGRTVKPEPTPEKGFYYRSDHFSFAKLGVPMFNF
CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCHHHHCCCEEEC
GSGDDLVDGGVEAGQKAAEDYEKNRYHAPDDEYEAITNWEGMMSDLRLYYAAGRMLAMTD
CCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHCCCEEEEEC
AWPNWNEGDEFRAARDKSRAAAK
CCCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
PIPPPLKVAGLAALALLAACNGSADPQKNAATAIPDVEIPQLSLATLQEVTRELSSDAY
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
EGRAPGTAGEEKTVAYIIKKYREAGLQPGNNGRWTQDVPLVEITAKNATPLTFTGGKTPV
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCE
TAQYAKDYVAFSYRVQPRTEVKDSDVVFVGYGINAPEKGWNDYAGLDVKGKTVVVLVNDP
EHHHHCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEECCCEEEEEECCC
DWENRETEGPFNGRAMTYYGRWSYKYEEAARQGAAAVLIVHDTEPAAYGWNVVESSNTGT
CCCCCCCCCCCCCCEEEEEECCCEEHHHHHHCCCEEEEEEECCCCCCCCCEEEECCCCCH
QYLAESKNGGADQTIANGWIQLAKAKELFASAGQDFDKLREAAKQKGFKPVPLAGVKASF
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEE
AFDNDIAKKMSRNVIGVLPGAKRPDEYVLYTGHWDHLGRCTPVDGDDICNGAVDNASGIA
ECCHHHHHHHHCCEEEECCCCCCCCCEEEEECCHHHCCCCCCCCCHHHCCCCCCCCCHHH
GLVTLAKAFKQAGAPDRSIVFLAVTAEESGLLGSKYYAENPVFPLSQTVGGVNMDALNAV
HHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHCCCCCCCHHHHCCCCCHHHHHCC
GPAKDIVVVGAGKSELDAYVEKLARMEGRTVKPEPTPEKGFYYRSDHFSFAKLGVPMFNF
CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCHHHHCCCEEEC
GSGDDLVDGGVEAGQKAAEDYEKNRYHAPDDEYEAITNWEGMMSDLRLYYAAGRMLAMTD
CCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHCCCEEEEEC
AWPNWNEGDEFRAARDKSRAAAK
CCCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA