Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is fyuA [H]

Identifier: 103486499

GI number: 103486499

Start: 1036125

End: 1038434

Strand: Direct

Name: fyuA [H]

Synonym: Sala_1010

Alternate gene names: 103486499

Gene position: 1036125-1038434 (Clockwise)

Preceding gene: 103486489

Following gene: 103486500

Centisome position: 30.97

GC content: 59.78

Gene sequence:

>2310_bases
ATGGTGGGAGGGAGAGTGTTTATGAAAACGCATTTGATCGCGCTGTTTGCGGCATCCGCGCTTGTCAGCCCTGTTGTCGC
CTTTGCCCAGGAAACGCCCGCCGCCGACGATCAGGGGGGGCTCGAGGAAATCATCGTCACCGCGCAAAAACGCGCCGAGG
GGCTGTCCGACGTGCCGATCTCGATCTCAGCGGTCAGCGGCAAGCAGGTCGAAAATTACGGGCAGACCAATCTTGAACAA
ATCTCGTCCTCGGTCCCGAACCTCAAGATCACCCAGACGGCGATCGCCAACCGTATCGCGATTCGCGGCATCGCATCGGG
CGACAACAAGGGGTTCGAACAATCGGTCGCGATGTTCGTCGACGGCGTCTATTACGGTCGCGACCAGCTCTCGCGCCTGC
CGCTCGTCGACATGGAGCGCGTCGAGGTGCTGCGCGGGCCGCAGCCGACCCTGTTCGGGAAAAATGCCATTGCCGGCGCG
GTCAATATCACGACGCGCGGCCCGACCGACACATTCGAAGGGTCGGTCAGCGGTCTTTACGAGTTCAACCACAAGGAATT
GCAGCTGACCGGCGTGCTGTCGGGACCGCTGAGCGACGGCGTCGAGGCGCGCGTCGTGGGCTATCATCGCTCGATGGACG
GCTATTTCTATAATCAGGAGCTCGATCGCGACGAACCCAATGTCGATGAGTATTATTTTCGCGGCAAGGTCGAACTGGAC
AAGGGCGGACCGTTCGCGGCCGAACTGAAACTGGAATATGCCGACTTTGAAATGAAGGGCCAGCCGCGCGACGTCTTCGG
CGCGGTCGGCAATTACAACGCGGTTTTCCAGGGTCCCTTCTTCGTCAGCACCGACCCCGATTTTGTCCGCGAGGACAATG
GTTATGAAAGCCGAAACAAGGTGTTCGGTGCCACACTTAATGTCGACTTCGAAATCGGCGATCACACGTTGACCGCCGTG
TCGGCCTTGCTCGATTACAAGACGCGCGAAATTGTCGACGTCGATTTTTCGGGCATCAGCTTCCTTGATGGCACCAATTT
GCGTGAGGATTACCGCCAGTTCAGCCAGGAACTGCGGCTGACCTCGCCGGGTGGCGAGGTGTTCGACTATATCGCCGGGG
TCTATTATCAGCACGCCAAACTCGACGTGCAGGATTTCACCCTGTTCAATCCGACCTTCCTCGCGCTCGGCGCGCCCTTC
AATGCGTTGGGCGACACCAGCAACGACCGCGATTACACGCAGAAATCCGATCTGATCTCCGCCTTTGCGCAAGGTGAATT
ATCGGTCACCGACCAGCTGCGCATTACTGCGGGCGCGCGGTTCAACCATGAGAAGAAGAGCGGCAGCCGCAGCCTGGCGA
TCGTCCAGGGGCCGCTCAGCACGGCGCCCGCAGCGGTCGTTGCGGCCGTGTTCCGGGCGCTCAATATCGAAACGCACAGC
ATCTCCGGCAAGATCAGCGAAGACAGCTTCAATCCGATGGTCAACGTCCAGTATGACGCGACCGATGACCTGATGGTCTA
TGCCTCCTATGCCAAGGGCACGAAGGCGGGCGGTTTCGACATAAGGTCGAACTCGCTGCCGACCTCGACGACCGTGGCGC
GGCCCGGCGCCTTTGTCTTCGAGGACGAAAGCGCAGACAATTTCGAGGCCGGCCTGAAATATAAAGGGCGCAATGTCGCT
TTCAACGTCTCGCTCTATCGCACCGATTACAAGGATCTTCAGGTCAATATCTTCGACGGCACGCTGAACTTCAACGTCCG
CAACGCTGCTGAAGCGCGGACGCAGGGGGTGGAGGCCGATTTCCGCGCGGCGCTCGCGCCGGGGCTGACGGTCAGCGGCG
CGGTCGCCTATCTCGACTTCAAGTTCACCAATTTCACCGAGGGCCAATGTTTTTATCTGCAGGTGCCCGGACCGAATGGC
CTGTGCGATTATTCCGGCAAGCGAAACGCCTTGAGCCCCGAATGGTCGGGCAATTTGAACCTCGACTACACGACGCCGGT
GACGAACGAGATGAAGGTCGCGCTCAACATCAACGCCGATTTCTCCTCTTCCTATATCGCCGCGGTAAACCTCGATCCGC
GTACGCATCAGGACGGATATGTAAAGCTGGGCGCGCGGTTTGCGCTGGCCGACGTTGATGATCGCTGGGAGGTCGCGCTG
ATCGGCCGTAACCTCACCAACCAGCGGATATTGCAGACGGCGAGTTCGATGCCGCTCGCCACGACGATCACGCGAGGGGC
GGGCAATGCCTATAACGGCATCGTCGACCGCCCGCGCACGATCGCGGTGCAACTGACGGGGCGCTTTTGA

Upstream 100 bases:

>100_bases
CGACACCTTCATGCTCTCCCAAATTATCTCACTTGCATAACGATACTTAAAGACGATAAGACTCGCAAGGCCAGAAAAGC
ATCGCGGGGACAACCCGACG

Downstream 100 bases:

>100_bases
GGTTATCGTTTCAATTGCGGTCCGCCTTGTCATAAAGACGTCATCCCGGCGAAGGCCGGGATAACGAACGGGGTTGGGAA
AGCGAGTGAAACACGACCGC

Product: TonB-dependent receptor

Products: NA

Alternate protein names: IPR65; IRPC [H]

Number of amino acids: Translated: 769; Mature: 769

Protein sequence:

>769_residues
MVGGRVFMKTHLIALFAASALVSPVVAFAQETPAADDQGGLEEIIVTAQKRAEGLSDVPISISAVSGKQVENYGQTNLEQ
ISSSVPNLKITQTAIANRIAIRGIASGDNKGFEQSVAMFVDGVYYGRDQLSRLPLVDMERVEVLRGPQPTLFGKNAIAGA
VNITTRGPTDTFEGSVSGLYEFNHKELQLTGVLSGPLSDGVEARVVGYHRSMDGYFYNQELDRDEPNVDEYYFRGKVELD
KGGPFAAELKLEYADFEMKGQPRDVFGAVGNYNAVFQGPFFVSTDPDFVREDNGYESRNKVFGATLNVDFEIGDHTLTAV
SALLDYKTREIVDVDFSGISFLDGTNLREDYRQFSQELRLTSPGGEVFDYIAGVYYQHAKLDVQDFTLFNPTFLALGAPF
NALGDTSNDRDYTQKSDLISAFAQGELSVTDQLRITAGARFNHEKKSGSRSLAIVQGPLSTAPAAVVAAVFRALNIETHS
ISGKISEDSFNPMVNVQYDATDDLMVYASYAKGTKAGGFDIRSNSLPTSTTVARPGAFVFEDESADNFEAGLKYKGRNVA
FNVSLYRTDYKDLQVNIFDGTLNFNVRNAAEARTQGVEADFRAALAPGLTVSGAVAYLDFKFTNFTEGQCFYLQVPGPNG
LCDYSGKRNALSPEWSGNLNLDYTTPVTNEMKVALNINADFSSSYIAAVNLDPRTHQDGYVKLGARFALADVDDRWEVAL
IGRNLTNQRILQTASSMPLATTITRGAGNAYNGIVDRPRTIAVQLTGRF

Sequences:

>Translated_769_residues
MVGGRVFMKTHLIALFAASALVSPVVAFAQETPAADDQGGLEEIIVTAQKRAEGLSDVPISISAVSGKQVENYGQTNLEQ
ISSSVPNLKITQTAIANRIAIRGIASGDNKGFEQSVAMFVDGVYYGRDQLSRLPLVDMERVEVLRGPQPTLFGKNAIAGA
VNITTRGPTDTFEGSVSGLYEFNHKELQLTGVLSGPLSDGVEARVVGYHRSMDGYFYNQELDRDEPNVDEYYFRGKVELD
KGGPFAAELKLEYADFEMKGQPRDVFGAVGNYNAVFQGPFFVSTDPDFVREDNGYESRNKVFGATLNVDFEIGDHTLTAV
SALLDYKTREIVDVDFSGISFLDGTNLREDYRQFSQELRLTSPGGEVFDYIAGVYYQHAKLDVQDFTLFNPTFLALGAPF
NALGDTSNDRDYTQKSDLISAFAQGELSVTDQLRITAGARFNHEKKSGSRSLAIVQGPLSTAPAAVVAAVFRALNIETHS
ISGKISEDSFNPMVNVQYDATDDLMVYASYAKGTKAGGFDIRSNSLPTSTTVARPGAFVFEDESADNFEAGLKYKGRNVA
FNVSLYRTDYKDLQVNIFDGTLNFNVRNAAEARTQGVEADFRAALAPGLTVSGAVAYLDFKFTNFTEGQCFYLQVPGPNG
LCDYSGKRNALSPEWSGNLNLDYTTPVTNEMKVALNINADFSSSYIAAVNLDPRTHQDGYVKLGARFALADVDDRWEVAL
IGRNLTNQRILQTASSMPLATTITRGAGNAYNGIVDRPRTIAVQLTGRF
>Mature_769_residues
MVGGRVFMKTHLIALFAASALVSPVVAFAQETPAADDQGGLEEIIVTAQKRAEGLSDVPISISAVSGKQVENYGQTNLEQ
ISSSVPNLKITQTAIANRIAIRGIASGDNKGFEQSVAMFVDGVYYGRDQLSRLPLVDMERVEVLRGPQPTLFGKNAIAGA
VNITTRGPTDTFEGSVSGLYEFNHKELQLTGVLSGPLSDGVEARVVGYHRSMDGYFYNQELDRDEPNVDEYYFRGKVELD
KGGPFAAELKLEYADFEMKGQPRDVFGAVGNYNAVFQGPFFVSTDPDFVREDNGYESRNKVFGATLNVDFEIGDHTLTAV
SALLDYKTREIVDVDFSGISFLDGTNLREDYRQFSQELRLTSPGGEVFDYIAGVYYQHAKLDVQDFTLFNPTFLALGAPF
NALGDTSNDRDYTQKSDLISAFAQGELSVTDQLRITAGARFNHEKKSGSRSLAIVQGPLSTAPAAVVAAVFRALNIETHS
ISGKISEDSFNPMVNVQYDATDDLMVYASYAKGTKAGGFDIRSNSLPTSTTVARPGAFVFEDESADNFEAGLKYKGRNVA
FNVSLYRTDYKDLQVNIFDGTLNFNVRNAAEARTQGVEADFRAALAPGLTVSGAVAYLDFKFTNFTEGQCFYLQVPGPNG
LCDYSGKRNALSPEWSGNLNLDYTTPVTNEMKVALNINADFSSSYIAAVNLDPRTHQDGYVKLGARFALADVDDRWEVAL
IGRNLTNQRILQTASSMPLATTITRGAGNAYNGIVDRPRTIAVQLTGRF

Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1788478, Length=198, Percent_Identity=29.2929292929293, Blast_Score=79, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 83871; Mature: 83871

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGGRVFMKTHLIALFAASALVSPVVAFAQETPAADDQGGLEEIIVTAQKRAEGLSDVPI
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE
SISAVSGKQVENYGQTNLEQISSSVPNLKITQTAIANRIAIRGIASGDNKGFEQSVAMFV
EEEECCCCHHHHCCCCCHHHHHHCCCCEEEEHHHHHCEEEEEEECCCCCCCHHHHHHHHH
DGVYYGRDQLSRLPLVDMERVEVLRGPQPTLFGKNAIAGAVNITTRGPTDTFEGSVSGLY
CCEEECHHHHCCCCCCCHHHHHHHCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCEEE
EFNHKELQLTGVLSGPLSDGVEARVVGYHRSMDGYFYNQELDRDEPNVDEYYFRGKVELD
EECCCEEEEEEEECCCCCCCCEEEEEEEEECCCCEEECCCCCCCCCCCCCEEEEEEEEEC
KGGPFAAELKLEYADFEMKGQPRDVFGAVGNYNAVFQGPFFVSTDPDFVREDNGYESRNK
CCCCEEEEEEEEEECEEECCCCHHHHHCCCCCCEEEECCEEECCCCHHHCCCCCCCCCCE
VFGATLNVDFEIGDHTLTAVSALLDYKTREIVDVDFSGISFLDGTNLREDYRQFSQELRL
EEEEEEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHEEE
TSPGGEVFDYIAGVYYQHAKLDVQDFTLFNPTFLALGAPFNALGDTSNDRDYTQKSDLIS
ECCCHHHHHHHHHHHHHHEEECHHHEEEECCEEEEECCCCHHCCCCCCCCCHHHHHHHHH
AFAQGELSVTDQLRITAGARFNHEKKSGSRSLAIVQGPLSTAPAAVVAAVFRALNIETHS
HHHCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEE
ISGKISEDSFNPMVNVQYDATDDLMVYASYAKGTKAGGFDIRSNSLPTSTTVARPGAFVF
CCCEECCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEECCCCCCCCEECCCCEEEE
EDESADNFEAGLKYKGRNVAFNVSLYRTDYKDLQVNIFDGTLNFNVRNAAEARTQGVEAD
ECCCCCCCCCCCEECCCEEEEEEEEEECCCCEEEEEEEECEEEEEECCHHHHHHCCCCHH
FRAALAPGLTVSGAVAYLDFKFTNFTEGQCFYLQVPGPNGLCDYSGKRNALSPEWSGNLN
HHHHHCCCCEECCEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEE
LDYTTPVTNEMKVALNINADFSSSYIAAVNLDPRTHQDGYVKLGARFALADVDDRWEVAL
EEECCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEECCCCCEEEEE
IGRNLTNQRILQTASSMPLATTITRGAGNAYNGIVDRPRTIAVQLTGRF
ECCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MVGGRVFMKTHLIALFAASALVSPVVAFAQETPAADDQGGLEEIIVTAQKRAEGLSDVPI
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE
SISAVSGKQVENYGQTNLEQISSSVPNLKITQTAIANRIAIRGIASGDNKGFEQSVAMFV
EEEECCCCHHHHCCCCCHHHHHHCCCCEEEEHHHHHCEEEEEEECCCCCCCHHHHHHHHH
DGVYYGRDQLSRLPLVDMERVEVLRGPQPTLFGKNAIAGAVNITTRGPTDTFEGSVSGLY
CCEEECHHHHCCCCCCCHHHHHHHCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCEEE
EFNHKELQLTGVLSGPLSDGVEARVVGYHRSMDGYFYNQELDRDEPNVDEYYFRGKVELD
EECCCEEEEEEEECCCCCCCCEEEEEEEEECCCCEEECCCCCCCCCCCCCEEEEEEEEEC
KGGPFAAELKLEYADFEMKGQPRDVFGAVGNYNAVFQGPFFVSTDPDFVREDNGYESRNK
CCCCEEEEEEEEEECEEECCCCHHHHHCCCCCCEEEECCEEECCCCHHHCCCCCCCCCCE
VFGATLNVDFEIGDHTLTAVSALLDYKTREIVDVDFSGISFLDGTNLREDYRQFSQELRL
EEEEEEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHEEE
TSPGGEVFDYIAGVYYQHAKLDVQDFTLFNPTFLALGAPFNALGDTSNDRDYTQKSDLIS
ECCCHHHHHHHHHHHHHHEEECHHHEEEECCEEEEECCCCHHCCCCCCCCCHHHHHHHHH
AFAQGELSVTDQLRITAGARFNHEKKSGSRSLAIVQGPLSTAPAAVVAAVFRALNIETHS
HHHCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEE
ISGKISEDSFNPMVNVQYDATDDLMVYASYAKGTKAGGFDIRSNSLPTSTTVARPGAFVF
CCCEECCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEECCCCCCCCEECCCCEEEE
EDESADNFEAGLKYKGRNVAFNVSLYRTDYKDLQVNIFDGTLNFNVRNAAEARTQGVEAD
ECCCCCCCCCCCEECCCEEEEEEEEEECCCCEEEEEEEECEEEEEECCHHHHHHCCCCHH
FRAALAPGLTVSGAVAYLDFKFTNFTEGQCFYLQVPGPNGLCDYSGKRNALSPEWSGNLN
HHHHHCCCCEECCEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEE
LDYTTPVTNEMKVALNINADFSSSYIAAVNLDPRTHQDGYVKLGARFALADVDDRWEVAL
EEECCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEECCCCCEEEEE
IGRNLTNQRILQTASSMPLATTITRGAGNAYNGIVDRPRTIAVQLTGRF
ECCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA