| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486495
Identifier: 103486495
GI number: 103486495
Start: 1030487
End: 1031716
Strand: Reverse
Name: 103486495
Synonym: Sala_1006
Alternate gene names: NA
Gene position: 1031716-1030487 (Counterclockwise)
Preceding gene: 103486496
Following gene: 103486494
Centisome position: 30.84
GC content: 64.72
Gene sequence:
>1230_bases ATGGCAAAGGATGTTTTCGTTCTCGGCGGCGCGCAGAGCGACTTTTCGCGTAACATCGAGCGCGAGGGCGGTGGGATGTT CGAACTGTTCCGCGACGTCGCGGAGGCGGCTTTTGCCGCCACGGGCATTGAACCAAGGGAAGTCGAAACGGCGCATGTCG GCAATTTCGTGGGCGAGCTGTTCGCGGGGCAAGGGCAGCTCGGCGGTTTCTTCGGCCACGTCCATCCCGACCTCGCGGGC GTCCCGGCGTCGCGGCACGAGGCGGCTTGCGCGTCGGGCAGCATCGCCATCCTTGCCGCCGCGGCGGAGATCGAGGCCGA GCGCTATGGACTCGCGCTCGTGCTCGGGATCGAGCTGATGCGCAACGTTCCGGGCCAGCGCGCCGCCGAATATCTCGGCG CCGCTGCCTGGGCAGGCCGCGAGGCGCAGGAGGCGCGCTATCTGTGGCCGTCCATGTTCGCGCGCGTTGCCGAGGAATAT GAGGAACGCTTCGGGCTCGACCGCGCCCATCTGCGCGCGATTTCGGCCAATAATTTCGCCAATGCGAAAAAAAACCCCAA TTCGCAGACGCGCGGCTGGGCGATCACCGAGGCGCATCTGGACGAGAATGACGAGGTCAATCCGTTGATCGAGGGACGTC TGCGCAAGTCCGATTGCGGTCAGGTCACCGACGGGGCGGCGGCGGTTTTCCTTGCTTCGGCCGAAATTGCCGAACGTTAC GCGCAGCGTCGGGGCATTCCGATCGACACCATCCCGCGCATCAAGGGCTGGGGCCATTCGACCGCGCCCCTGCTCTATTC GACAAAGATTCAGAACAGTCGCGGCCAAGATTTTGTTTTTCCTGGCGTTCGCAAGGCGATGATGGACGCGTTGCGGCGAG CGGAGATGCCCGACGTTTACGCCTGTGACGGGGTCGAGGTGCATGACTGTTTCTCGATCACCGAATATATGGCGATCGAC CATTTCGGGATCACCAAACCGGGCGAAAGCTGGCGCGCGGTCGAGGACGGGACGATTGCGCTGGGCGGCAGGCTGCCGGT CAACCCGTCGGGCGGGCTGATCGGCCTTGGCCACCCGGTCGGCGCGACCGGGGTTCGGATGCTGCTGGACAGCTGGCGGC AAGTCACCGGAAACGCTGGCGATTATCAGGTGGAAGGGGCGCGCAATTTCGCCACCTTCAACGTCGGCGGCAGCGCGACA ACCGCGGTCAGCTTCGTCGTCGGCACCTGA
Upstream 100 bases:
>100_bases CGGGGCGGGGGCCATCGGCCTTGTGCAAGGTTGCGAGCCCCCACCCCAACCCCTCCCCTGAAGGGGAGGGGCCTTATCGA ACTCGAAAAGGAAGCCTGAC
Downstream 100 bases:
>100_bases TTTGGCGGACGTCTTTCTCTATGACGCCGTCCGCACGCCACGCGGCAAGGCACGGCCCGACGGCGGGCTCGCGAACCTCA GCCCGCAGGAACTGGTGCGC
Product: acetyl-CoA acetyltransferase
Products: CoA; 3-oxoacyl-CoA
Alternate protein names: NA
Number of amino acids: Translated: 409; Mature: 408
Protein sequence:
>409_residues MAKDVFVLGGAQSDFSRNIEREGGGMFELFRDVAEAAFAATGIEPREVETAHVGNFVGELFAGQGQLGGFFGHVHPDLAG VPASRHEAACASGSIAILAAAAEIEAERYGLALVLGIELMRNVPGQRAAEYLGAAAWAGREAQEARYLWPSMFARVAEEY EERFGLDRAHLRAISANNFANAKKNPNSQTRGWAITEAHLDENDEVNPLIEGRLRKSDCGQVTDGAAAVFLASAEIAERY AQRRGIPIDTIPRIKGWGHSTAPLLYSTKIQNSRGQDFVFPGVRKAMMDALRRAEMPDVYACDGVEVHDCFSITEYMAID HFGITKPGESWRAVEDGTIALGGRLPVNPSGGLIGLGHPVGATGVRMLLDSWRQVTGNAGDYQVEGARNFATFNVGGSAT TAVSFVVGT
Sequences:
>Translated_409_residues MAKDVFVLGGAQSDFSRNIEREGGGMFELFRDVAEAAFAATGIEPREVETAHVGNFVGELFAGQGQLGGFFGHVHPDLAG VPASRHEAACASGSIAILAAAAEIEAERYGLALVLGIELMRNVPGQRAAEYLGAAAWAGREAQEARYLWPSMFARVAEEY EERFGLDRAHLRAISANNFANAKKNPNSQTRGWAITEAHLDENDEVNPLIEGRLRKSDCGQVTDGAAAVFLASAEIAERY AQRRGIPIDTIPRIKGWGHSTAPLLYSTKIQNSRGQDFVFPGVRKAMMDALRRAEMPDVYACDGVEVHDCFSITEYMAID HFGITKPGESWRAVEDGTIALGGRLPVNPSGGLIGLGHPVGATGVRMLLDSWRQVTGNAGDYQVEGARNFATFNVGGSAT TAVSFVVGT >Mature_408_residues AKDVFVLGGAQSDFSRNIEREGGGMFELFRDVAEAAFAATGIEPREVETAHVGNFVGELFAGQGQLGGFFGHVHPDLAGV PASRHEAACASGSIAILAAAAEIEAERYGLALVLGIELMRNVPGQRAAEYLGAAAWAGREAQEARYLWPSMFARVAEEYE ERFGLDRAHLRAISANNFANAKKNPNSQTRGWAITEAHLDENDEVNPLIEGRLRKSDCGQVTDGAAAVFLASAEIAERYA QRRGIPIDTIPRIKGWGHSTAPLLYSTKIQNSRGQDFVFPGVRKAMMDALRRAEMPDVYACDGVEVHDCFSITEYMAIDH FGITKPGESWRAVEDGTIALGGRLPVNPSGGLIGLGHPVGATGVRMLLDSWRQVTGNAGDYQVEGARNFATFNVGGSATT AVSFVVGT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI19923233, Length=417, Percent_Identity=27.0983213429257, Blast_Score=108, Evalue=8e-24, Organism=Homo sapiens, GI302344767, Length=344, Percent_Identity=27.906976744186, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI302344760, Length=344, Percent_Identity=27.906976744186, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI302344762, Length=333, Percent_Identity=27.3273273273273, Blast_Score=91, Evalue=3e-18, Organism=Homo sapiens, GI55956775, Length=288, Percent_Identity=27.0833333333333, Blast_Score=77, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17537653, Length=401, Percent_Identity=24.9376558603491, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI19921506, Length=402, Percent_Identity=25.8706467661692, Blast_Score=115, Evalue=6e-26, Organism=Drosophila melanogaster, GI24585051, Length=415, Percent_Identity=25.5421686746988, Blast_Score=112, Evalue=5e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002155 - InterPro: IPR016039 - InterPro: IPR016038 - InterPro: IPR020617 - InterPro: IPR020616 [H]
Pfam domain/function: PF02803 Thiolase_C; PF00108 Thiolase_N [H]
EC number: 2.3.1.16
Molecular weight: Translated: 43844; Mature: 43712
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKDVFVLGGAQSDFSRNIEREGGGMFELFRDVAEAAFAATGIEPREVETAHVGNFVGEL CCCCEEEEECCCCHHHHCHHHCCCCHHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHH FAGQGQLGGFFGHVHPDLAGVPASRHEAACASGSIAILAAAAEIEAERYGLALVLGIELM HCCCCCCCCEECCCCCCCCCCCCCCCHHHHCCCCEEEEEEHHHHHHHHHCCHHHHHHHHH RNVPGQRAAEYLGAAAWAGREAQEARYLWPSMFARVAEEYEERFGLDRAHLRAISANNFA HCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCC NAKKNPNSQTRGWAITEAHLDENDEVNPLIEGRLRKSDCGQVTDGAAAVFLASAEIAERY CCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHH AQRRGIPIDTIPRIKGWGHSTAPLLYSTKIQNSRGQDFVFPGVRKAMMDALRRAEMPDVY HHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEE ACDGVEVHDCFSITEYMAIDHFGITKPGESWRAVEDGTIALGGRLPVNPSGGLIGLGHPV ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCEEEECCCCCCCCCCCEEECCCCC GATGVRMLLDSWRQVTGNAGDYQVEGARNFATFNVGGSATTAVSFVVGT CHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCCEEEEEEECC >Mature Secondary Structure AKDVFVLGGAQSDFSRNIEREGGGMFELFRDVAEAAFAATGIEPREVETAHVGNFVGEL CCCEEEEECCCCHHHHCHHHCCCCHHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHH FAGQGQLGGFFGHVHPDLAGVPASRHEAACASGSIAILAAAAEIEAERYGLALVLGIELM HCCCCCCCCEECCCCCCCCCCCCCCCHHHHCCCCEEEEEEHHHHHHHHHCCHHHHHHHHH RNVPGQRAAEYLGAAAWAGREAQEARYLWPSMFARVAEEYEERFGLDRAHLRAISANNFA HCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCC NAKKNPNSQTRGWAITEAHLDENDEVNPLIEGRLRKSDCGQVTDGAAAVFLASAEIAERY CCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHH AQRRGIPIDTIPRIKGWGHSTAPLLYSTKIQNSRGQDFVFPGVRKAMMDALRRAEMPDVY HHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEE ACDGVEVHDCFSITEYMAIDHFGITKPGESWRAVEDGTIALGGRLPVNPSGGLIGLGHPV ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCEEEECCCCCCCCCCCEEECCCCC GATGVRMLLDSWRQVTGNAGDYQVEGARNFATFNVGGSATTAVSFVVGT CHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: acyl-CoA; acetyl-CoA
Specific reaction: acyl-CoA + acetyl-CoA = CoA + 3-oxoacyl-CoA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9371463 [H]