Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486466

Identifier: 103486466

GI number: 103486466

Start: 1001562

End: 1002233

Strand: Reverse

Name: 103486466

Synonym: Sala_0977

Alternate gene names: NA

Gene position: 1002233-1001562 (Counterclockwise)

Preceding gene: 103486467

Following gene: 103486465

Centisome position: 29.96

GC content: 72.77

Gene sequence:

>672_bases
TTGAGTCAGTCCCCGCAAATACGGATGCCGACGCGCAGCGCCGCCGAACTGCTCGACGCGCTCGTCGCGCGCGAAGGGAC
CGGCGCGCACCCGCATATCCGGTCGGGCGCGCTGTCGAGCGGCGCCGATGCGATGCGTAACCTGGCTGACGCAGTCCACT
TCCTCTGCCTGCTCCACGGCCGCCATCCCGGCGTGATCGACAGCGCCGCGCGCAAGACGGTCGACCCCACGGCACGCGCG
TGGATGGACCAGGCTGCCGCCGCCTTCGTCGACGAACGCGCTTTCCTTTCGAAAATCGCCTCGGCGGTCGGCCCGGTGCC
GAGCACGCAGGGTCAGGCGCAATGCGAGGCCGCGGTCGCCGCGCAGTGCAAGGCGCTCGCCATGCTCGCCGAATCGGACC
GCCACGGCTGCGCGCTCGGCGCGGCGATTGCGCTGACGCTCGACTGGCGGACGATCCGCGTCCTGCTCGACATCAGCGCG
CAGCGGCTCGACCTCGCGCCGCCAGCCTGTTCGCTGCCCGACCTTCCCGGAACCGCGCGGCTCGCCACCAGCGTGGCCGG
CACGCCCGCGGTCGAACGCGCGATGCTGTTCGGCGCGCAGCAACTGATCGCGCAGCACAGCGGCCTGTGGGACCTGCTGG
CCGCGCGCGCCGCCGCGCGGGCGCACGGATAA

Upstream 100 bases:

>100_bases
GCCCCCGCATATAAACGCGTCGTTTACGACGTTGGCCTATGAGGGATCGCCAGCCATTCCATCGGCTTGGCCCCGGTCAG
GCGCCAGAGAGGAACCCGCG

Downstream 100 bases:

>100_bases
GCATCGCGCCCCGGAGGTCTCCCCGCCGCCCATGATATACGGGTAGCGGAGGCCTGGGAAAGCGAGCATGACGACGAAAA
CCGCGGCTCTCTTCCATTCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MSQSPQIRMPTRSAAELLDALVAREGTGAHPHIRSGALSSGADAMRNLADAVHFLCLLHGRHPGVIDSAARKTVDPTARA
WMDQAAAAFVDERAFLSKIASAVGPVPSTQGQAQCEAAVAAQCKALAMLAESDRHGCALGAAIALTLDWRTIRVLLDISA
QRLDLAPPACSLPDLPGTARLATSVAGTPAVERAMLFGAQQLIAQHSGLWDLLAARAAARAHG

Sequences:

>Translated_223_residues
MSQSPQIRMPTRSAAELLDALVAREGTGAHPHIRSGALSSGADAMRNLADAVHFLCLLHGRHPGVIDSAARKTVDPTARA
WMDQAAAAFVDERAFLSKIASAVGPVPSTQGQAQCEAAVAAQCKALAMLAESDRHGCALGAAIALTLDWRTIRVLLDISA
QRLDLAPPACSLPDLPGTARLATSVAGTPAVERAMLFGAQQLIAQHSGLWDLLAARAAARAHG
>Mature_222_residues
SQSPQIRMPTRSAAELLDALVAREGTGAHPHIRSGALSSGADAMRNLADAVHFLCLLHGRHPGVIDSAARKTVDPTARAW
MDQAAAAFVDERAFLSKIASAVGPVPSTQGQAQCEAAVAAQCKALAMLAESDRHGCALGAAIALTLDWRTIRVLLDISAQ
RLDLAPPACSLPDLPGTARLATSVAGTPAVERAMLFGAQQLIAQHSGLWDLLAARAAARAHG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23159; Mature: 23028

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSPQIRMPTRSAAELLDALVAREGTGAHPHIRSGALSSGADAMRNLADAVHFLCLLHG
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
RHPGVIDSAARKTVDPTARAWMDQAAAAFVDERAFLSKIASAVGPVPSTQGQAQCEAAVA
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
AQCKALAMLAESDRHGCALGAAIALTLDWRTIRVLLDISAQRLDLAPPACSLPDLPGTAR
HHHHHHHHHHHCCCCCHHHHHHHHEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
LATSVAGTPAVERAMLFGAQQLIAQHSGLWDLLAARAAARAHG
HHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SQSPQIRMPTRSAAELLDALVAREGTGAHPHIRSGALSSGADAMRNLADAVHFLCLLHG
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
RHPGVIDSAARKTVDPTARAWMDQAAAAFVDERAFLSKIASAVGPVPSTQGQAQCEAAVA
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
AQCKALAMLAESDRHGCALGAAIALTLDWRTIRVLLDISAQRLDLAPPACSLPDLPGTAR
HHHHHHHHHHHCCCCCHHHHHHHHEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
LATSVAGTPAVERAMLFGAQQLIAQHSGLWDLLAARAAARAHG
HHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA