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The map label for this gene is yjiR [C]

Identifier: 103486442

GI number: 103486442

Start: 977505

End: 977852

Strand: Reverse

Name: yjiR [C]

Synonym: Sala_0952

Alternate gene names: 103486442

Gene position: 977852-977505 (Counterclockwise)

Preceding gene: 103486443

Following gene: 103486437

Centisome position: 29.23

GC content: 66.38

Gene sequence:

>348_bases
ATGCTCGATCAGTCCAAACCCGTGTACCAGCGCCTGCGCGACGTGATCGCCAACGCGATCCTCGACGGCACCTTTCGCGA
CGGCGACATGTTGCCTTCGGTGCGCAGCCTCGCCGCCGACGAAGGCGCCAACCCGCTCACCGTCGCCAAGGCCTATCAGA
CCTTTCAGGACGAGGGGCTGGTCACGGTGAAGCGCGGCGTGGGCATGTTCGTCGCCGAGGGGGCGACCGATCGGCTGCGC
GACCTGATGCGCGAAGATTTCCTGACGAATGTGTGGCCCCCGGTCGCACAGCAGATGCGCCGCATCGGCCTCGACGCGCG
GACCTTGCTCGATTTGACCGAGGCCTGA

Upstream 100 bases:

>100_bases
ACGAGGTTGTTCGCGCCTGGGACATTTAATGTCGCCGTTTGGCGAGTTGACGTAATAAGCGACATTTGACTGTGCTGCTG
TCTTATGGCATTAAGTCGCC

Downstream 100 bases:

>100_bases
CGAGGTCTGCCGGTTGGAAGGTGATTCCCGACCGTCCCTATTCGTCATCCCGGCGAAGGCCGGGATCTCACCCTATCAGT
TTACCGCACCGGCGAGATCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator Gntr Family; Transcriptional Regulator GntR Family Protein; Regulatory Protein GntR HTH; GntR-Family Transcriptional Regulator; Transcriptional Regulatory Protein; Transcription Regulator; Transcriptional Regulator Transcription Regulator Protein

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MLDQSKPVYQRLRDVIANAILDGTFRDGDMLPSVRSLAADEGANPLTVAKAYQTFQDEGLVTVKRGVGMFVAEGATDRLR
DLMREDFLTNVWPPVAQQMRRIGLDARTLLDLTEA

Sequences:

>Translated_115_residues
MLDQSKPVYQRLRDVIANAILDGTFRDGDMLPSVRSLAADEGANPLTVAKAYQTFQDEGLVTVKRGVGMFVAEGATDRLR
DLMREDFLTNVWPPVAQQMRRIGLDARTLLDLTEA
>Mature_115_residues
MLDQSKPVYQRLRDVIANAILDGTFRDGDMLPSVRSLAADEGANPLTVAKAYQTFQDEGLVTVKRGVGMFVAEGATDRLR
DLMREDFLTNVWPPVAQQMRRIGLDARTLLDLTEA

Specific function: Unknown

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12796; Mature: 12796

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDQSKPVYQRLRDVIANAILDGTFRDGDMLPSVRSLAADEGANPLTVAKAYQTFQDEGL
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
VTVKRGVGMFVAEGATDRLRDLMREDFLTNVWPPVAQQMRRIGLDARTLLDLTEA
EEECCCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure
MLDQSKPVYQRLRDVIANAILDGTFRDGDMLPSVRSLAADEGANPLTVAKAYQTFQDEGL
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
VTVKRGVGMFVAEGATDRLRDLMREDFLTNVWPPVAQQMRRIGLDARTLLDLTEA
EEECCCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA