| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486436
Identifier: 103486436
GI number: 103486436
Start: 966467
End: 967975
Strand: Reverse
Name: 103486436
Synonym: Sala_0946
Alternate gene names: NA
Gene position: 967975-966467 (Counterclockwise)
Preceding gene: 103486437
Following gene: 103486435
Centisome position: 28.94
GC content: 67.4
Gene sequence:
>1509_bases GTGGAGCGACGCCGACGGCAATGCGATGGCGCTGCTCCTCCTGCCCCTCCTCTGGGGCATCCTCGCCTTCTGGCTGCTCA TGCTGCCGCGCCGGCGTTCGCAATACACGCTGCTCGCCTTTCCCGCCGCCGCCGGGCTCGGCCTGATTTTCGTCGGAGGC GCCCTGTGACCCTCGCTTTTTCCAAGGACGCAGTGCAGCGTGCGTTGTCGGGCCACGCCGCGATCGGCCTGCTTGCCTCG GCGCTGCTCTATCTCATCTGCCTCACCGGCACCGTCGTTGTTTTCTATCAGGAATGGCAGCGCATCGAACAGCCGAATGC CCCCGAAATGGCGGCGATCGCCCCCGACGCGGTGCAGCGCGCCGTCGCCGCGGTGCTCGCGAGCGAAAAGGGCAAGCCCG CCACGACGCACCTCTATGTCCATATGCCGGTCGGCGGCCTGCCGCGCACGACGATCACCACCGACCATCAGGCGGTGCAC ATCGACGCCGATGGCAGGATCGCCATGCCCGAGGAGAATGCCTGGTCGGAGTTTCTGCTCCACGCCCATTATTCGCTCAA CATTCCGGGCCTTGTCGGCATGACGATCGTCGGCATCTTCGGCGTGATGATCCTCGCGCTCACGCTGTCGGGCATCGTCG CGCACCCGCGCATCTTCCGCGACGCCTTTCGCCTCCGCGCGCGCGACAATCATGGCGTCGGCCTCGCCGACTGGCACAAC CGGCTGAGCGTCTGGACCCTGCCCTTTTCGCTCGCGATCGCGCTGACCGGCGCGATGATCGGGCTTGGCGTCGTCGGCGC CCATGGCCTCGCCGCCGCCTTCTACAACAATGACGTCGAGGCCGCCTATGCGCCGATCTTCGGCGAGGAACATGGCGCCG ACGCCCGCCCCGCGCCGCTCGCCAATGTCGCCGCGCCGCTCGCCTGGCTCGCCAGGAACCACCCCGAAGTGCGCCCGACC TACGTCATCCTCCACGATCCACAGACGCGCGGCCAGCATATCCAGCTCATCGCCGAACATCCGCGCCGCCTGATCTACGG CGAAACCTATCAGTTCGGCGCCGACGGCGGCTATCATGGCAAGGTCGGCCTGTCCGACGGGCATATGGGGCAACAGCTCG CCGCCTCGACCTACAACCTGCATTTCGGCAATTACGGCGGCCTCCCGGTCAAGCTCGCCTATATCGTCTTCGGCCTCGCA CTCACCATCGTCGTCGCCACGGGCACCTCGATCTGGCTCGGCAAAAGGCAGCGGCGCGGCCTCCACGAGCCGCGGCTGCG CGCGGGCTGGGACGGCGTCATCTGGGGCGTCCCGCTTGCCCTCACCCTCACCTTCCTCGCGCGGCTCCTCATCGGCAACG GCGCGCCGCTGATCGCGATCTTCTGGACGCTGACAATCGCAATCCCGTTGCTCGCGATCGCCTTCGCGGCAAGGCGCCCC AAACGGCTGCTGCAATATCTGCTGTGCGGATCGCTCGCGCTGGCGCTGGCAAGCTGGTCCGTCGTGTAG
Upstream 100 bases:
>100_bases TGGGTCGCCGCCTGCTCACCTTCCTCCTCACCGTTCCGCTTGCCTTTGCGGCGGCGCTGCTCGCCGCGCTCGGCGCGCGC GCGTTCGCGGGGATGGCGGG
Downstream 100 bases:
>100_bases GGCGGCGTGCTGTATAAAGCCGCGCTCGCAGCCCGCCCCATAGTCCAAACGCGCAGCAAATCCCCGGCGCGACGAACCCC GTGCCCTCCGCCCGCATCAC
Product: PepSY-associated TM helix
Products: NA
Alternate protein names: PepSY-Associated TM Helix; Iron Uptake Protein; Aspartate Kinase; PepSY-Associated TM Helix Domain Protein
Number of amino acids: Translated: 502; Mature: 502
Protein sequence:
>502_residues MERRRRQCDGAAPPAPPLGHPRLLAAHAAAPAFAIHAARLSRRRRARPDFRRRRPVTLAFSKDAVQRALSGHAAIGLLAS ALLYLICLTGTVVVFYQEWQRIEQPNAPEMAAIAPDAVQRAVAAVLASEKGKPATTHLYVHMPVGGLPRTTITTDHQAVH IDADGRIAMPEENAWSEFLLHAHYSLNIPGLVGMTIVGIFGVMILALTLSGIVAHPRIFRDAFRLRARDNHGVGLADWHN RLSVWTLPFSLAIALTGAMIGLGVVGAHGLAAAFYNNDVEAAYAPIFGEEHGADARPAPLANVAAPLAWLARNHPEVRPT YVILHDPQTRGQHIQLIAEHPRRLIYGETYQFGADGGYHGKVGLSDGHMGQQLAASTYNLHFGNYGGLPVKLAYIVFGLA LTIVVATGTSIWLGKRQRRGLHEPRLRAGWDGVIWGVPLALTLTFLARLLIGNGAPLIAIFWTLTIAIPLLAIAFAARRP KRLLQYLLCGSLALALASWSVV
Sequences:
>Translated_502_residues MERRRRQCDGAAPPAPPLGHPRLLAAHAAAPAFAIHAARLSRRRRARPDFRRRRPVTLAFSKDAVQRALSGHAAIGLLAS ALLYLICLTGTVVVFYQEWQRIEQPNAPEMAAIAPDAVQRAVAAVLASEKGKPATTHLYVHMPVGGLPRTTITTDHQAVH IDADGRIAMPEENAWSEFLLHAHYSLNIPGLVGMTIVGIFGVMILALTLSGIVAHPRIFRDAFRLRARDNHGVGLADWHN RLSVWTLPFSLAIALTGAMIGLGVVGAHGLAAAFYNNDVEAAYAPIFGEEHGADARPAPLANVAAPLAWLARNHPEVRPT YVILHDPQTRGQHIQLIAEHPRRLIYGETYQFGADGGYHGKVGLSDGHMGQQLAASTYNLHFGNYGGLPVKLAYIVFGLA LTIVVATGTSIWLGKRQRRGLHEPRLRAGWDGVIWGVPLALTLTFLARLLIGNGAPLIAIFWTLTIAIPLLAIAFAARRP KRLLQYLLCGSLALALASWSVV >Mature_502_residues MERRRRQCDGAAPPAPPLGHPRLLAAHAAAPAFAIHAARLSRRRRARPDFRRRRPVTLAFSKDAVQRALSGHAAIGLLAS ALLYLICLTGTVVVFYQEWQRIEQPNAPEMAAIAPDAVQRAVAAVLASEKGKPATTHLYVHMPVGGLPRTTITTDHQAVH IDADGRIAMPEENAWSEFLLHAHYSLNIPGLVGMTIVGIFGVMILALTLSGIVAHPRIFRDAFRLRARDNHGVGLADWHN RLSVWTLPFSLAIALTGAMIGLGVVGAHGLAAAFYNNDVEAAYAPIFGEEHGADARPAPLANVAAPLAWLARNHPEVRPT YVILHDPQTRGQHIQLIAEHPRRLIYGETYQFGADGGYHGKVGLSDGHMGQQLAASTYNLHFGNYGGLPVKLAYIVFGLA LTIVVATGTSIWLGKRQRRGLHEPRLRAGWDGVIWGVPLALTLTFLARLLIGNGAPLIAIFWTLTIAIPLLAIAFAARRP KRLLQYLLCGSLALALASWSVV
Specific function: Unknown
COG id: COG3182
COG function: function code S; Uncharacterized iron-regulated membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54399; Mature: 54399
Theoretical pI: Translated: 10.53; Mature: 10.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERRRRQCDGAAPPAPPLGHPRLLAAHAAAPAFAIHAARLSRRRRARPDFRRRRPVTLAF CCCHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHCCCEEEEE SKDAVQRALSGHAAIGLLASALLYLICLTGTVVVFYQEWQRIEQPNAPEMAAIAPDAVQR CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHH AVAAVLASEKGKPATTHLYVHMPVGGLPRTTITTDHQAVHIDADGRIAMPEENAWSEFLL HHHHHHHCCCCCCCEEEEEEEECCCCCCCCEEECCCEEEEECCCCEEECCCCCCHHHHHH HAHYSLNIPGLVGMTIVGIFGVMILALTLSGIVAHPRIFRDAFRLRARDNHGVGLADWHN HEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHCC RLSVWTLPFSLAIALTGAMIGLGVVGAHGLAAAFYNNDVEAAYAPIFGEEHGADARPAPL CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCH ANVAAPLAWLARNHPEVRPTYVILHDPQTRGQHIQLIAEHPRRLIYGETYQFGADGGYHG HHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEHHHHHCCCEEEECCCEEECCCCCCCC KVGLSDGHMGQQLAASTYNLHFGNYGGLPVKLAYIVFGLALTIVVATGTSIWLGKRQRRG EECCCCCCCCHHHHHCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCC LHEPRLRAGWDGVIWGVPLALTLTFLARLLIGNGAPLIAIFWTLTIAIPLLAIAFAARRP CCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCH KRLLQYLLCGSLALALASWSVV HHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MERRRRQCDGAAPPAPPLGHPRLLAAHAAAPAFAIHAARLSRRRRARPDFRRRRPVTLAF CCCHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHCCCEEEEE SKDAVQRALSGHAAIGLLASALLYLICLTGTVVVFYQEWQRIEQPNAPEMAAIAPDAVQR CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHH AVAAVLASEKGKPATTHLYVHMPVGGLPRTTITTDHQAVHIDADGRIAMPEENAWSEFLL HHHHHHHCCCCCCCEEEEEEEECCCCCCCCEEECCCEEEEECCCCEEECCCCCCHHHHHH HAHYSLNIPGLVGMTIVGIFGVMILALTLSGIVAHPRIFRDAFRLRARDNHGVGLADWHN HEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHCC RLSVWTLPFSLAIALTGAMIGLGVVGAHGLAAAFYNNDVEAAYAPIFGEEHGADARPAPL CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCH ANVAAPLAWLARNHPEVRPTYVILHDPQTRGQHIQLIAEHPRRLIYGETYQFGADGGYHG HHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEHHHHHCCCEEEECCCEEECCCCCCCC KVGLSDGHMGQQLAASTYNLHFGNYGGLPVKLAYIVFGLALTIVVATGTSIWLGKRQRRG EECCCCCCCCHHHHHCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCC LHEPRLRAGWDGVIWGVPLALTLTFLARLLIGNGAPLIAIFWTLTIAIPLLAIAFAARRP CCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCH KRLLQYLLCGSLALALASWSVV HHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA