Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486436

Identifier: 103486436

GI number: 103486436

Start: 966467

End: 967975

Strand: Reverse

Name: 103486436

Synonym: Sala_0946

Alternate gene names: NA

Gene position: 967975-966467 (Counterclockwise)

Preceding gene: 103486437

Following gene: 103486435

Centisome position: 28.94

GC content: 67.4

Gene sequence:

>1509_bases
GTGGAGCGACGCCGACGGCAATGCGATGGCGCTGCTCCTCCTGCCCCTCCTCTGGGGCATCCTCGCCTTCTGGCTGCTCA
TGCTGCCGCGCCGGCGTTCGCAATACACGCTGCTCGCCTTTCCCGCCGCCGCCGGGCTCGGCCTGATTTTCGTCGGAGGC
GCCCTGTGACCCTCGCTTTTTCCAAGGACGCAGTGCAGCGTGCGTTGTCGGGCCACGCCGCGATCGGCCTGCTTGCCTCG
GCGCTGCTCTATCTCATCTGCCTCACCGGCACCGTCGTTGTTTTCTATCAGGAATGGCAGCGCATCGAACAGCCGAATGC
CCCCGAAATGGCGGCGATCGCCCCCGACGCGGTGCAGCGCGCCGTCGCCGCGGTGCTCGCGAGCGAAAAGGGCAAGCCCG
CCACGACGCACCTCTATGTCCATATGCCGGTCGGCGGCCTGCCGCGCACGACGATCACCACCGACCATCAGGCGGTGCAC
ATCGACGCCGATGGCAGGATCGCCATGCCCGAGGAGAATGCCTGGTCGGAGTTTCTGCTCCACGCCCATTATTCGCTCAA
CATTCCGGGCCTTGTCGGCATGACGATCGTCGGCATCTTCGGCGTGATGATCCTCGCGCTCACGCTGTCGGGCATCGTCG
CGCACCCGCGCATCTTCCGCGACGCCTTTCGCCTCCGCGCGCGCGACAATCATGGCGTCGGCCTCGCCGACTGGCACAAC
CGGCTGAGCGTCTGGACCCTGCCCTTTTCGCTCGCGATCGCGCTGACCGGCGCGATGATCGGGCTTGGCGTCGTCGGCGC
CCATGGCCTCGCCGCCGCCTTCTACAACAATGACGTCGAGGCCGCCTATGCGCCGATCTTCGGCGAGGAACATGGCGCCG
ACGCCCGCCCCGCGCCGCTCGCCAATGTCGCCGCGCCGCTCGCCTGGCTCGCCAGGAACCACCCCGAAGTGCGCCCGACC
TACGTCATCCTCCACGATCCACAGACGCGCGGCCAGCATATCCAGCTCATCGCCGAACATCCGCGCCGCCTGATCTACGG
CGAAACCTATCAGTTCGGCGCCGACGGCGGCTATCATGGCAAGGTCGGCCTGTCCGACGGGCATATGGGGCAACAGCTCG
CCGCCTCGACCTACAACCTGCATTTCGGCAATTACGGCGGCCTCCCGGTCAAGCTCGCCTATATCGTCTTCGGCCTCGCA
CTCACCATCGTCGTCGCCACGGGCACCTCGATCTGGCTCGGCAAAAGGCAGCGGCGCGGCCTCCACGAGCCGCGGCTGCG
CGCGGGCTGGGACGGCGTCATCTGGGGCGTCCCGCTTGCCCTCACCCTCACCTTCCTCGCGCGGCTCCTCATCGGCAACG
GCGCGCCGCTGATCGCGATCTTCTGGACGCTGACAATCGCAATCCCGTTGCTCGCGATCGCCTTCGCGGCAAGGCGCCCC
AAACGGCTGCTGCAATATCTGCTGTGCGGATCGCTCGCGCTGGCGCTGGCAAGCTGGTCCGTCGTGTAG

Upstream 100 bases:

>100_bases
TGGGTCGCCGCCTGCTCACCTTCCTCCTCACCGTTCCGCTTGCCTTTGCGGCGGCGCTGCTCGCCGCGCTCGGCGCGCGC
GCGTTCGCGGGGATGGCGGG

Downstream 100 bases:

>100_bases
GGCGGCGTGCTGTATAAAGCCGCGCTCGCAGCCCGCCCCATAGTCCAAACGCGCAGCAAATCCCCGGCGCGACGAACCCC
GTGCCCTCCGCCCGCATCAC

Product: PepSY-associated TM helix

Products: NA

Alternate protein names: PepSY-Associated TM Helix; Iron Uptake Protein; Aspartate Kinase; PepSY-Associated TM Helix Domain Protein

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MERRRRQCDGAAPPAPPLGHPRLLAAHAAAPAFAIHAARLSRRRRARPDFRRRRPVTLAFSKDAVQRALSGHAAIGLLAS
ALLYLICLTGTVVVFYQEWQRIEQPNAPEMAAIAPDAVQRAVAAVLASEKGKPATTHLYVHMPVGGLPRTTITTDHQAVH
IDADGRIAMPEENAWSEFLLHAHYSLNIPGLVGMTIVGIFGVMILALTLSGIVAHPRIFRDAFRLRARDNHGVGLADWHN
RLSVWTLPFSLAIALTGAMIGLGVVGAHGLAAAFYNNDVEAAYAPIFGEEHGADARPAPLANVAAPLAWLARNHPEVRPT
YVILHDPQTRGQHIQLIAEHPRRLIYGETYQFGADGGYHGKVGLSDGHMGQQLAASTYNLHFGNYGGLPVKLAYIVFGLA
LTIVVATGTSIWLGKRQRRGLHEPRLRAGWDGVIWGVPLALTLTFLARLLIGNGAPLIAIFWTLTIAIPLLAIAFAARRP
KRLLQYLLCGSLALALASWSVV

Sequences:

>Translated_502_residues
MERRRRQCDGAAPPAPPLGHPRLLAAHAAAPAFAIHAARLSRRRRARPDFRRRRPVTLAFSKDAVQRALSGHAAIGLLAS
ALLYLICLTGTVVVFYQEWQRIEQPNAPEMAAIAPDAVQRAVAAVLASEKGKPATTHLYVHMPVGGLPRTTITTDHQAVH
IDADGRIAMPEENAWSEFLLHAHYSLNIPGLVGMTIVGIFGVMILALTLSGIVAHPRIFRDAFRLRARDNHGVGLADWHN
RLSVWTLPFSLAIALTGAMIGLGVVGAHGLAAAFYNNDVEAAYAPIFGEEHGADARPAPLANVAAPLAWLARNHPEVRPT
YVILHDPQTRGQHIQLIAEHPRRLIYGETYQFGADGGYHGKVGLSDGHMGQQLAASTYNLHFGNYGGLPVKLAYIVFGLA
LTIVVATGTSIWLGKRQRRGLHEPRLRAGWDGVIWGVPLALTLTFLARLLIGNGAPLIAIFWTLTIAIPLLAIAFAARRP
KRLLQYLLCGSLALALASWSVV
>Mature_502_residues
MERRRRQCDGAAPPAPPLGHPRLLAAHAAAPAFAIHAARLSRRRRARPDFRRRRPVTLAFSKDAVQRALSGHAAIGLLAS
ALLYLICLTGTVVVFYQEWQRIEQPNAPEMAAIAPDAVQRAVAAVLASEKGKPATTHLYVHMPVGGLPRTTITTDHQAVH
IDADGRIAMPEENAWSEFLLHAHYSLNIPGLVGMTIVGIFGVMILALTLSGIVAHPRIFRDAFRLRARDNHGVGLADWHN
RLSVWTLPFSLAIALTGAMIGLGVVGAHGLAAAFYNNDVEAAYAPIFGEEHGADARPAPLANVAAPLAWLARNHPEVRPT
YVILHDPQTRGQHIQLIAEHPRRLIYGETYQFGADGGYHGKVGLSDGHMGQQLAASTYNLHFGNYGGLPVKLAYIVFGLA
LTIVVATGTSIWLGKRQRRGLHEPRLRAGWDGVIWGVPLALTLTFLARLLIGNGAPLIAIFWTLTIAIPLLAIAFAARRP
KRLLQYLLCGSLALALASWSVV

Specific function: Unknown

COG id: COG3182

COG function: function code S; Uncharacterized iron-regulated membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54399; Mature: 54399

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERRRRQCDGAAPPAPPLGHPRLLAAHAAAPAFAIHAARLSRRRRARPDFRRRRPVTLAF
CCCHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHCCCEEEEE
SKDAVQRALSGHAAIGLLASALLYLICLTGTVVVFYQEWQRIEQPNAPEMAAIAPDAVQR
CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHH
AVAAVLASEKGKPATTHLYVHMPVGGLPRTTITTDHQAVHIDADGRIAMPEENAWSEFLL
HHHHHHHCCCCCCCEEEEEEEECCCCCCCCEEECCCEEEEECCCCEEECCCCCCHHHHHH
HAHYSLNIPGLVGMTIVGIFGVMILALTLSGIVAHPRIFRDAFRLRARDNHGVGLADWHN
HEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHCC
RLSVWTLPFSLAIALTGAMIGLGVVGAHGLAAAFYNNDVEAAYAPIFGEEHGADARPAPL
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCH
ANVAAPLAWLARNHPEVRPTYVILHDPQTRGQHIQLIAEHPRRLIYGETYQFGADGGYHG
HHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEHHHHHCCCEEEECCCEEECCCCCCCC
KVGLSDGHMGQQLAASTYNLHFGNYGGLPVKLAYIVFGLALTIVVATGTSIWLGKRQRRG
EECCCCCCCCHHHHHCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCC
LHEPRLRAGWDGVIWGVPLALTLTFLARLLIGNGAPLIAIFWTLTIAIPLLAIAFAARRP
CCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCH
KRLLQYLLCGSLALALASWSVV
HHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MERRRRQCDGAAPPAPPLGHPRLLAAHAAAPAFAIHAARLSRRRRARPDFRRRRPVTLAF
CCCHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHCCCEEEEE
SKDAVQRALSGHAAIGLLASALLYLICLTGTVVVFYQEWQRIEQPNAPEMAAIAPDAVQR
CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHH
AVAAVLASEKGKPATTHLYVHMPVGGLPRTTITTDHQAVHIDADGRIAMPEENAWSEFLL
HHHHHHHCCCCCCCEEEEEEEECCCCCCCCEEECCCEEEEECCCCEEECCCCCCHHHHHH
HAHYSLNIPGLVGMTIVGIFGVMILALTLSGIVAHPRIFRDAFRLRARDNHGVGLADWHN
HEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHCC
RLSVWTLPFSLAIALTGAMIGLGVVGAHGLAAAFYNNDVEAAYAPIFGEEHGADARPAPL
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCH
ANVAAPLAWLARNHPEVRPTYVILHDPQTRGQHIQLIAEHPRRLIYGETYQFGADGGYHG
HHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEHHHHHCCCEEEECCCEEECCCCCCCC
KVGLSDGHMGQQLAASTYNLHFGNYGGLPVKLAYIVFGLALTIVVATGTSIWLGKRQRRG
EECCCCCCCCHHHHHCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCC
LHEPRLRAGWDGVIWGVPLALTLTFLARLLIGNGAPLIAIFWTLTIAIPLLAIAFAARRP
CCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCH
KRLLQYLLCGSLALALASWSVV
HHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA