| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103486411
Identifier: 103486411
GI number: 103486411
Start: 933804
End: 935012
Strand: Direct
Name: 103486411
Synonym: Sala_0921
Alternate gene names: NA
Gene position: 933804-935012 (Clockwise)
Preceding gene: 103486410
Following gene: 103486418
Centisome position: 27.91
GC content: 62.28
Gene sequence:
>1209_bases ATGGATGATCCCGCGCCGCATCGGCACCAGTCGCTCGCTTTCATGCTGCTCTATGCCTTGGCGGTAGCTGGCGGAAGCAT GGCCTATGTCCCGTTCCTGACCATCCTGCTTCCGTCGCGGATTGCGGTGCTGGCAGGGTCGGCCGACGTCGAATGGCTCG GGTTGCTGACATTCGCGGGGGCCATTGCGGCCAGTGTTGGCGGAATCCTGTTCGGTTGGCTCAGCGACATCACGAACAGT CGGCGATGGTGGATATTGTCGGGGCTGGTCCTGACAGTCGCGCTGCTCCTTGCCGTCCCGCTGGCGGACGATCTGTGGAC ACTCGTGTCGATCATCATTTGCTGGCAGCTCGCGCTCAACATGGTCCTTGGCCCCCTTGCAGCGTGGGGCGGCGACCTCG TTCCCGACGATCAGAAGGGTCTGCTGGGCGGCCTTCTCGCCTTCGCGCCCGCGCTTGGCGCCTGGTCGGGGGCGCTCGTC ACGCTGCCCGTTCTCGAGACGTTCGAATCCCGACTTTTCGCGCTTGCGTTTCTGGTGGTGGCCGCCGTCACACCGGCGAC GGTTTTTGCACGCCCCAGACGCCTCGAGATGCTCGGGCGCGCACCATCGCTGGATCGCGATGGACGGATCGGGACCCTGT CAAAGGGACCGGCCGTGCGGATGTGGTTCGCCCGCTTTCTGGTCCAGATTTCCGAAGCGGCGTTATTCGCCTATCTCTAT TTCTGGTTTCGCTCGATTGACCCGGACATGGGCGATAACGAAAAGGCGCGGCTGTTCAGTCTTGCCCTCACCATTGCGAT ACCCATCGCCCTTTACTGTGGCCGCTGGTCCGATCGCAATGACCGTCCATTTCTGCCGCTTGTGATCAGCAGCGCGGTTT CGGCGGCCGGGATGCTCGGTATGGCGCTCGCTGCCTCGGCCGACCTCGCCAAGCTCGCCTATCTTCTTTTCGGTATCGCA ACCACCGTTTTTCTCGCCTTGCATGCTGGTCAGACGCTTCGAATTCTGCCGCGTTCGGATCGCCGTGGACGCGATCTAGG GGTTTTCAATCTGACCAACACGCTCCCTTCGCTGATTATGCCGCTGCTGACGATCTCGGTCGTCCCGGGCTTCGGTTTCG AGACGCTGTTTCTGGTGCTCGCGACGCTTGCCATTCTTGCGACGTTGATCCTGACGACAATTCCGCGTCCCAGTCCCGGT CGCGCCTAG
Upstream 100 bases:
>100_bases GAAATGATCATCAAGGCGCAGCGGGGGGAAAAGTTGCCGCCACAACCCGTGATTGTTGCCGGGGGCTTCGTCGAACGCGA ATCGACTTCTGCGCCCGCGC
Downstream 100 bases:
>100_bases AGCGCGATGACATGATATTGATCCACCGTGACGGAGGCGATTTTGGCCGAGTGCGAGGCGCGAGGAGGGGCTGGTGCATT TCCATCGTCACCGATGTTGT
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 402; Mature: 402
Protein sequence:
>402_residues MDDPAPHRHQSLAFMLLYALAVAGGSMAYVPFLTILLPSRIAVLAGSADVEWLGLLTFAGAIAASVGGILFGWLSDITNS RRWWILSGLVLTVALLLAVPLADDLWTLVSIIICWQLALNMVLGPLAAWGGDLVPDDQKGLLGGLLAFAPALGAWSGALV TLPVLETFESRLFALAFLVVAAVTPATVFARPRRLEMLGRAPSLDRDGRIGTLSKGPAVRMWFARFLVQISEAALFAYLY FWFRSIDPDMGDNEKARLFSLALTIAIPIALYCGRWSDRNDRPFLPLVISSAVSAAGMLGMALAASADLAKLAYLLFGIA TTVFLALHAGQTLRILPRSDRRGRDLGVFNLTNTLPSLIMPLLTISVVPGFGFETLFLVLATLAILATLILTTIPRPSPG RA
Sequences:
>Translated_402_residues MDDPAPHRHQSLAFMLLYALAVAGGSMAYVPFLTILLPSRIAVLAGSADVEWLGLLTFAGAIAASVGGILFGWLSDITNS RRWWILSGLVLTVALLLAVPLADDLWTLVSIIICWQLALNMVLGPLAAWGGDLVPDDQKGLLGGLLAFAPALGAWSGALV TLPVLETFESRLFALAFLVVAAVTPATVFARPRRLEMLGRAPSLDRDGRIGTLSKGPAVRMWFARFLVQISEAALFAYLY FWFRSIDPDMGDNEKARLFSLALTIAIPIALYCGRWSDRNDRPFLPLVISSAVSAAGMLGMALAASADLAKLAYLLFGIA TTVFLALHAGQTLRILPRSDRRGRDLGVFNLTNTLPSLIMPLLTISVVPGFGFETLFLVLATLAILATLILTTIPRPSPG RA >Mature_402_residues MDDPAPHRHQSLAFMLLYALAVAGGSMAYVPFLTILLPSRIAVLAGSADVEWLGLLTFAGAIAASVGGILFGWLSDITNS RRWWILSGLVLTVALLLAVPLADDLWTLVSIIICWQLALNMVLGPLAAWGGDLVPDDQKGLLGGLLAFAPALGAWSGALV TLPVLETFESRLFALAFLVVAAVTPATVFARPRRLEMLGRAPSLDRDGRIGTLSKGPAVRMWFARFLVQISEAALFAYLY FWFRSIDPDMGDNEKARLFSLALTIAIPIALYCGRWSDRNDRPFLPLVISSAVSAAGMLGMALAASADLAKLAYLLFGIA TTVFLALHAGQTLRILPRSDRRGRDLGVFNLTNTLPSLIMPLLTISVVPGFGFETLFLVLATLAILATLILTTIPRPSPG RA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43139; Mature: 43139
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDDPAPHRHQSLAFMLLYALAVAGGSMAYVPFLTILLPSRIAVLAGSADVEWLGLLTFAG CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHH AIAASVGGILFGWLSDITNSRRWWILSGLVLTVALLLAVPLADDLWTLVSIIICWQLALN HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH MVLGPLAAWGGDLVPDDQKGLLGGLLAFAPALGAWSGALVTLPVLETFESRLFALAFLVV HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH AAVTPATVFARPRRLEMLGRAPSLDRDGRIGTLSKGPAVRMWFARFLVQISEAALFAYLY HHHCCHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH FWFRSIDPDMGDNEKARLFSLALTIAIPIALYCGRWSDRNDRPFLPLVISSAVSAAGMLG HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH MALAASADLAKLAYLLFGIATTVFLALHAGQTLRILPRSDRRGRDLGVFNLTNTLPSLIM HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHH PLLTISVVPGFGFETLFLVLATLAILATLILTTIPRPSPGRA HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MDDPAPHRHQSLAFMLLYALAVAGGSMAYVPFLTILLPSRIAVLAGSADVEWLGLLTFAG CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHH AIAASVGGILFGWLSDITNSRRWWILSGLVLTVALLLAVPLADDLWTLVSIIICWQLALN HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH MVLGPLAAWGGDLVPDDQKGLLGGLLAFAPALGAWSGALVTLPVLETFESRLFALAFLVV HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH AAVTPATVFARPRRLEMLGRAPSLDRDGRIGTLSKGPAVRMWFARFLVQISEAALFAYLY HHHCCHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH FWFRSIDPDMGDNEKARLFSLALTIAIPIALYCGRWSDRNDRPFLPLVISSAVSAAGMLG HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH MALAASADLAKLAYLLFGIATTVFLALHAGQTLRILPRSDRRGRDLGVFNLTNTLPSLIM HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHH PLLTISVVPGFGFETLFLVLATLAILATLILTTIPRPSPGRA HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA