| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486408
Identifier: 103486408
GI number: 103486408
Start: 930297
End: 931808
Strand: Direct
Name: 103486408
Synonym: Sala_0918
Alternate gene names: NA
Gene position: 930297-931808 (Clockwise)
Preceding gene: 103486407
Following gene: 103486409
Centisome position: 27.81
GC content: 61.04
Gene sequence:
>1512_bases ATGACGGGCATGGACAGCAGCACCGCCAGGCTGAAAATCGTCATCGCCGGCGGCGGCACCGCCGGCTGGATGGCGGCGGC GGCCTTGTCCGGCACCTTGGGCGCGGCAATCGATCTGACCCTGATCGAATCCGATGCCATTGGCACGATCGGCGTTGGAG AAAGCACGATCCCGCCGATCGTGCTGTTCAATCGATTGATGGGGATCAATGAAGCCGCATTCATGCGCGCGACCCAGGCG ACGTTCAAGCTGGGGATCCAGTTTGAAAACTGGAAGCATGTCGGCGAAAGCTATTTCCATTCTTTTGGCACCACGGGAAA GGATCACTGGTCGGCGGGGTTCCAGCATTTCTGGCTTCACGGCCTGACCTGCGGGCACAGCCGGAGTTATGACGATTACT GCCTGGAGCTGAAGGCTGCGCACGAGGGCAAGTTCGCGCATCTGCCCGACGATCGCATGAATTATGCCTATCAACTTGAT TCGTCGCTTTACGCCGCCTTTTTGCGCGAGCGTGCGGAAGGCGACGGCACGAGGCGAATCGAGGGGCGGATCGCCGCCGT CGAACTCGACGGTGCAAGCGGCAATATCGCGGCGCTGATGCTCGACGGCGAGCGGCGGATCGAAGGCGATCTTTTCATCG ATTGTACCGGTTTTCGTGCGCTGCTGATCGAAGGCGCCCTGCACGCGGGGTTCGACGACTGGACACACTATCTTCCCTGC GATTCCGCGATTGCCGTGCAGACTGCAAGCGTCGCCCCGCCCGTGCCCTATACGCGGGCGATCGCGCACGATGCCGGATG GCAATGGCGCATTCCGTTGCAGCACCGCCAGGGAAACGGGATCGTCTATTGCAGTCGTTACCTTGCCAAAGACGATGCGC TCGACCGGTTGCTCGGTTCCATCGAGGGTGATGTGCTGACCGAGCCGAACTTCATCGGCTATCGCACGGGAGCGCGGCGC AAACAGTGGTACCGAAACTGCGTGGCAGTCGGTCTGTCGGGCGGGTTCATGGAGCCGCTTGAATCGACCTCGATCCACCT CATCCAGCGGGCCGTGCTGCGTCTCATCCGTATGCTGCCTTCGGGGCCGGTCAGCGAGCGCGACATCGCCGAGTTCAACG ATCAGCAATTTGCCGACATGGAACAGATCCGCGACTTTCTCATTCTCCATTACAAGGTGACCGAGCGGCGTGATTCACCC TTTTGGCGGCAGTGTGCGGCGATGCCGATCCCGGCGAGCCTTGAACAGAAAATCGAACTGTTTCGCGAGACGGGCCGGGT GTTCCGCAGAAATGAGGAGCTTTTTGTCGAAAACAGCTGGGTGCAGGTGATGATGGGCCAGGGCATCATGCCACAGCGCT ATCATCCGATCGCGGCAAAGCTCCGTCCCGACGAACTCGAGGCATTTCTGTCGATGCTGCGCGACGGCGTCGAGCGAACG GTTGCAAGCCTGCCTGCGCACGGGGCCTATATCGCCCGATATTGCGCGGTCGGCGGGCGGAACGACGCATGA
Upstream 100 bases:
>100_bases TGACCGATCACCTGCCTGTCGACGCGCGCGGGATACTTGCGCCGCTTACGCCTGAAACTGCGGGACAAATCCGCGCGCGG CTCCTGCGGAGCCTGTCGCG
Downstream 100 bases:
>100_bases CGCCCGCGTTCGTGATCGCGCTCGTTCTTGAGGGCATGCACACGCCTGCCGCGGTGCCGGAACAGGACAATTGGACGCTG GTCTGGTCGGACGAGTTCGA
Product: tryptophan halogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 503; Mature: 502
Protein sequence:
>503_residues MTGMDSSTARLKIVIAGGGTAGWMAAAALSGTLGAAIDLTLIESDAIGTIGVGESTIPPIVLFNRLMGINEAAFMRATQA TFKLGIQFENWKHVGESYFHSFGTTGKDHWSAGFQHFWLHGLTCGHSRSYDDYCLELKAAHEGKFAHLPDDRMNYAYQLD SSLYAAFLRERAEGDGTRRIEGRIAAVELDGASGNIAALMLDGERRIEGDLFIDCTGFRALLIEGALHAGFDDWTHYLPC DSAIAVQTASVAPPVPYTRAIAHDAGWQWRIPLQHRQGNGIVYCSRYLAKDDALDRLLGSIEGDVLTEPNFIGYRTGARR KQWYRNCVAVGLSGGFMEPLESTSIHLIQRAVLRLIRMLPSGPVSERDIAEFNDQQFADMEQIRDFLILHYKVTERRDSP FWRQCAAMPIPASLEQKIELFRETGRVFRRNEELFVENSWVQVMMGQGIMPQRYHPIAAKLRPDELEAFLSMLRDGVERT VASLPAHGAYIARYCAVGGRNDA
Sequences:
>Translated_503_residues MTGMDSSTARLKIVIAGGGTAGWMAAAALSGTLGAAIDLTLIESDAIGTIGVGESTIPPIVLFNRLMGINEAAFMRATQA TFKLGIQFENWKHVGESYFHSFGTTGKDHWSAGFQHFWLHGLTCGHSRSYDDYCLELKAAHEGKFAHLPDDRMNYAYQLD SSLYAAFLRERAEGDGTRRIEGRIAAVELDGASGNIAALMLDGERRIEGDLFIDCTGFRALLIEGALHAGFDDWTHYLPC DSAIAVQTASVAPPVPYTRAIAHDAGWQWRIPLQHRQGNGIVYCSRYLAKDDALDRLLGSIEGDVLTEPNFIGYRTGARR KQWYRNCVAVGLSGGFMEPLESTSIHLIQRAVLRLIRMLPSGPVSERDIAEFNDQQFADMEQIRDFLILHYKVTERRDSP FWRQCAAMPIPASLEQKIELFRETGRVFRRNEELFVENSWVQVMMGQGIMPQRYHPIAAKLRPDELEAFLSMLRDGVERT VASLPAHGAYIARYCAVGGRNDA >Mature_502_residues TGMDSSTARLKIVIAGGGTAGWMAAAALSGTLGAAIDLTLIESDAIGTIGVGESTIPPIVLFNRLMGINEAAFMRATQAT FKLGIQFENWKHVGESYFHSFGTTGKDHWSAGFQHFWLHGLTCGHSRSYDDYCLELKAAHEGKFAHLPDDRMNYAYQLDS SLYAAFLRERAEGDGTRRIEGRIAAVELDGASGNIAALMLDGERRIEGDLFIDCTGFRALLIEGALHAGFDDWTHYLPCD SAIAVQTASVAPPVPYTRAIAHDAGWQWRIPLQHRQGNGIVYCSRYLAKDDALDRLLGSIEGDVLTEPNFIGYRTGARRK QWYRNCVAVGLSGGFMEPLESTSIHLIQRAVLRLIRMLPSGPVSERDIAEFNDQQFADMEQIRDFLILHYKVTERRDSPF WRQCAAMPIPASLEQKIELFRETGRVFRRNEELFVENSWVQVMMGQGIMPQRYHPIAAKLRPDELEAFLSMLRDGVERTV ASLPAHGAYIARYCAVGGRNDA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006905 [H]
Pfam domain/function: PF04820 Trp_halogenase [H]
EC number: NA
Molecular weight: Translated: 55956; Mature: 55825
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGMDSSTARLKIVIAGGGTAGWMAAAALSGTLGAAIDLTLIESDAIGTIGVGESTIPPI CCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCEEECCCCCCCHH VLFNRLMGINEAAFMRATQATFKLGIQFENWKHVGESYFHSFGTTGKDHWSAGFQHFWLH HHHHHHHCCCHHHHHHHHHHEEEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHH GLTCGHSRSYDDYCLELKAAHEGKFAHLPDDRMNYAYQLDSSLYAAFLRERAEGDGTRRI CEECCCCCCCCCCEEEEEECCCCCCCCCCCHHCCEEEEECHHHHHHHHHHHHCCCCCEEE EGRIAAVELDGASGNIAALMLDGERRIEGDLFIDCTGFRALLIEGALHAGFDDWTHYLPC CCEEEEEEECCCCCCEEEEEECCCCEECCCEEEEECCHHHHHHHHHHHCCCHHHHCCCCC DSAIAVQTASVAPPVPYTRAIAHDAGWQWRIPLQHRQGNGIVYCSRYLAKDDALDRLLGS CCCCEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCEEEEEHHHHCHHHHHHHHHH IEGDVLTEPNFIGYRTGARRKQWYRNCVAVGLSGGFMEPLESTSIHLIQRAVLRLIRMLP CCCCEECCCCCEEECCCCHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC SGPVSERDIAEFNDQQFADMEQIRDFLILHYKVTERRDSPFWRQCAAMPIPASLEQKIEL CCCCCCCHHHHCCCHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHCCCCCHHHHHHHHH FRETGRVFRRNEELFVENSWVQVMMGQGIMPQRYHPIAAKLRPDELEAFLSMLRDGVERT HHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHH VASLPAHGAYIARYCAVGGRNDA HHHCCCCHHHHHHHHHCCCCCCC >Mature Secondary Structure TGMDSSTARLKIVIAGGGTAGWMAAAALSGTLGAAIDLTLIESDAIGTIGVGESTIPPI CCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCEEECCCCCCCHH VLFNRLMGINEAAFMRATQATFKLGIQFENWKHVGESYFHSFGTTGKDHWSAGFQHFWLH HHHHHHHCCCHHHHHHHHHHEEEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHH GLTCGHSRSYDDYCLELKAAHEGKFAHLPDDRMNYAYQLDSSLYAAFLRERAEGDGTRRI CEECCCCCCCCCCEEEEEECCCCCCCCCCCHHCCEEEEECHHHHHHHHHHHHCCCCCEEE EGRIAAVELDGASGNIAALMLDGERRIEGDLFIDCTGFRALLIEGALHAGFDDWTHYLPC CCEEEEEEECCCCCCEEEEEECCCCEECCCEEEEECCHHHHHHHHHHHCCCHHHHCCCCC DSAIAVQTASVAPPVPYTRAIAHDAGWQWRIPLQHRQGNGIVYCSRYLAKDDALDRLLGS CCCCEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCEEEEEHHHHCHHHHHHHHHH IEGDVLTEPNFIGYRTGARRKQWYRNCVAVGLSGGFMEPLESTSIHLIQRAVLRLIRMLP CCCCEECCCCCEEECCCCHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC SGPVSERDIAEFNDQQFADMEQIRDFLILHYKVTERRDSPFWRQCAAMPIPASLEQKIEL CCCCCCCHHHHCCCHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHCCCCCHHHHHHHHH FRETGRVFRRNEELFVENSWVQVMMGQGIMPQRYHPIAAKLRPDELEAFLSMLRDGVERT HHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHH VASLPAHGAYIARYCAVGGRNDA HHHCCCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]