BacMap

Definition	Sphingopyxis alaskensis RB2256, complete genome.
Accession	NC_008048
Length	3,345,170

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The map label for this gene is ygfF [C]

Identifier: 103486370

GI number: 103486370

Start: 885904

End: 886665

Strand: Direct

Name: ygfF [C]

Synonym: Sala_0880

Alternate gene names: 103486370

Gene position: 885904-886665 (Clockwise)

Preceding gene: 103486369

Following gene: 103486371

Centisome position: 26.48

GC content: 65.88

Gene sequence:

>762_bases
GTGAGTATCGCGGGAAAAAATGCAATCGTCACCGGCGGCTCGCGCGGGATCGGCGCGGCGATCGTGCGGCGGCTGGGCGA
GGGCGGCGTTCATGTCGCGATCAATTATGTCGGCAACCGCTCTGCTGCGGAGACGCTTGCTTGTGAAATCACGGCCGCGG
GCGGCAATGCGTTCGCGGTTCAGGCCGACGTGTCCACGCTGGCGGGTATCGATGCGCTGTTCGCCGCCTGTGACGAAGCC
TTTGGCGGCCTGCCCAACCTCGACATATTGATCAACAACGCGGGCGTCGGCCGCGGCGACCGCGACGGCTCCCTTGCAGG
GGCGGATGAGGCACTGTTCGACGAGTTATTGGCGGTGAATGTCAAGGGACCGCATTTCGTGACGCAAAAGGCGTTGTCCC
GGCTCCGCGATGGCGGCCGGATCGTCAATATCGGGTCGATGTCGGGCAAGGTCGGCCAGCCGTTCGCGGCCAGCTATGCG
ATGACCAAGCGGGCCATACAAAGCCTGACCTTTTCGACCGCGCTTGCCGTCGCAAAGCGGCGGATCACCTGCAACTGCAT
CGCTCCCGGTGCGGTGGCGACCGACTTCATCGCCGGGCTGCGCGCCAAGCCGGGGTGGGACGAGGCGACCGCGAAACACA
CGCCGATGGGTCGCTTGGGGGAACCCGACGATATCGCGGGCGCGGTGATGATGTTGCTGGGCGACGATGCGCGCTGGGTG
ACCGGACAGGTGATCGAAGCCAGCGGGGGCCTCGCCCTCTGA

Upstream 100 bases:

>100_bases
GCGTGCCCGAAGACATTGCCGACGCCGTAATGATGCTCGCGCGCGAAGACGCGCATTGGGTGACGGGGCAAATTGTCGAA
GCAAGTGGAGGGCTGTTTCT

Downstream 100 bases:

>100_bases
TGGCGCTGATGACCGAAAAGCTTCGTGCCATCATGGCGCTCGACCCCGACCGGAGCGAGATTGATTTCGAGGGAGTCGAT
TATAGCTGGCGGCAGATCGC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MSIAGKNAIVTGGSRGIGAAIVRRLGEGGVHVAINYVGNRSAAETLACEITAAGGNAFAVQADVSTLAGIDALFAACDEA
FGGLPNLDILINNAGVGRGDRDGSLAGADEALFDELLAVNVKGPHFVTQKALSRLRDGGRIVNIGSMSGKVGQPFAASYA
MTKRAIQSLTFSTALAVAKRRITCNCIAPGAVATDFIAGLRAKPGWDEATAKHTPMGRLGEPDDIAGAVMMLLGDDARWV
TGQVIEASGGLAL

Sequences:

>Translated_253_residues
MSIAGKNAIVTGGSRGIGAAIVRRLGEGGVHVAINYVGNRSAAETLACEITAAGGNAFAVQADVSTLAGIDALFAACDEA
FGGLPNLDILINNAGVGRGDRDGSLAGADEALFDELLAVNVKGPHFVTQKALSRLRDGGRIVNIGSMSGKVGQPFAASYA
MTKRAIQSLTFSTALAVAKRRITCNCIAPGAVATDFIAGLRAKPGWDEATAKHTPMGRLGEPDDIAGAVMMLLGDDARWV
TGQVIEASGGLAL
>Mature_252_residues
SIAGKNAIVTGGSRGIGAAIVRRLGEGGVHVAINYVGNRSAAETLACEITAAGGNAFAVQADVSTLAGIDALFAACDEAF
GGLPNLDILINNAGVGRGDRDGSLAGADEALFDELLAVNVKGPHFVTQKALSRLRDGGRIVNIGSMSGKVGQPFAASYAM
TKRAIQSLTFSTALAVAKRRITCNCIAPGAVATDFIAGLRAKPGWDEATAKHTPMGRLGEPDDIAGAVMMLLGDDARWVT
GQVIEASGGLAL

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=31.6, Blast_Score=115, Evalue=3e-26,
Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=33.852140077821, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=30.8, Blast_Score=104, Evalue=8e-23,
Organism=Homo sapiens, GI40254992, Length=249, Percent_Identity=30.9236947791165, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI109715829, Length=251, Percent_Identity=34.6613545816733, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI19923817, Length=265, Percent_Identity=27.9245283018868, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=26.4, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=31.4720812182741, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI59889578, Length=226, Percent_Identity=29.646017699115, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI126723191, Length=187, Percent_Identity=28.8770053475936, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=28.8, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI7705925, Length=264, Percent_Identity=25.7575757575758, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI2367175, Length=249, Percent_Identity=36.144578313253, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI1787905, Length=252, Percent_Identity=34.1269841269841, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1790717, Length=253, Percent_Identity=28.8537549407115, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1789208, Length=254, Percent_Identity=32.6771653543307, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI87082160, Length=254, Percent_Identity=28.3464566929134, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1787335, Length=259, Percent_Identity=32.8185328185328, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI2367365, Length=245, Percent_Identity=35.5102040816327, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI87082100, Length=261, Percent_Identity=32.9501915708812, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788459, Length=257, Percent_Identity=29.9610894941634, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=29.6, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1786812, Length=263, Percent_Identity=27.3764258555133, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=30.1158301158301, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787820, Length=231, Percent_Identity=29.4372294372294, Blast_Score=66, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=32.7067669172932, Blast_Score=107, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=30.2788844621514, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI193204405, Length=266, Percent_Identity=31.5789473684211, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI25147288, Length=255, Percent_Identity=30.1960784313725, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17531453, Length=269, Percent_Identity=30.4832713754647, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=31.8352059925094, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17555706, Length=255, Percent_Identity=29.4117647058824, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=30.8270676691729, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17561402, Length=264, Percent_Identity=30.3030303030303, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=31.9391634980989, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17559104, Length=271, Percent_Identity=33.9483394833948, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17538480, Length=269, Percent_Identity=30.4832713754647, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17562904, Length=265, Percent_Identity=29.811320754717, Blast_Score=90, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI71994604, Length=260, Percent_Identity=29.2307692307692, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17555612, Length=257, Percent_Identity=29.9610894941634, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17562990, Length=267, Percent_Identity=30.7116104868914, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI115534694, Length=252, Percent_Identity=28.5714285714286, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17562910, Length=271, Percent_Identity=28.7822878228782, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17560150, Length=273, Percent_Identity=29.6703296703297, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=29.6577946768061, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71994600, Length=262, Percent_Identity=27.8625954198473, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=30.0380228136882, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=271, Percent_Identity=26.9372693726937, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=220, Percent_Identity=30, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI72000259, Length=269, Percent_Identity=28.2527881040892, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17563726, Length=269, Percent_Identity=28.2527881040892, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17568967, Length=197, Percent_Identity=34.5177664974619, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17536025, Length=259, Percent_Identity=27.4131274131274, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17536651, Length=260, Percent_Identity=27.6923076923077, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71997099, Length=203, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=207, Percent_Identity=27.536231884058, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=30.3030303030303, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17508651, Length=263, Percent_Identity=27.7566539923954, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI86565303, Length=222, Percent_Identity=27.9279279279279, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17570069, Length=168, Percent_Identity=30.3571428571429, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=201, Percent_Identity=30.8457711442786, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=202, Percent_Identity=30.6930693069307, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=33.4661354581673, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=33.201581027668, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24643142, Length=251, Percent_Identity=31.4741035856574, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI23397609, Length=258, Percent_Identity=33.7209302325581, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI28571526, Length=260, Percent_Identity=30.7692307692308, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24644339, Length=263, Percent_Identity=28.8973384030418, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI21357041, Length=262, Percent_Identity=30.1526717557252, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI116007236, Length=244, Percent_Identity=31.5573770491803, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI116007238, Length=174, Percent_Identity=35.632183908046, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24644337, Length=262, Percent_Identity=27.4809160305344, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI18859837, Length=197, Percent_Identity=30.4568527918782, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25721; Mature: 25589

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIAGKNAIVTGGSRGIGAAIVRRLGEGGVHVAINYVGNRSAAETLACEITAAGGNAFAV
CCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCCHHEEEEEEEECCCCEEEE
QADVSTLAGIDALFAACDEAFGGLPNLDILINNAGVGRGDRDGSLAGADEALFDELLAVN
EECHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHEEC
VKGPHFVTQKALSRLRDGGRIVNIGSMSGKVGQPFAASYAMTKRAIQSLTFSTALAVAKR
CCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RITCNCIAPGAVATDFIAGLRAKPGWDEATAKHTPMGRLGEPDDIAGAVMMLLGDDARWV
CEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEEECCCCCEE
TGQVIEASGGLAL
EEEEEECCCCCCC
>Mature Secondary Structure 
SIAGKNAIVTGGSRGIGAAIVRRLGEGGVHVAINYVGNRSAAETLACEITAAGGNAFAV
CCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCCHHEEEEEEEECCCCEEEE
QADVSTLAGIDALFAACDEAFGGLPNLDILINNAGVGRGDRDGSLAGADEALFDELLAVN
EECHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHEEC
VKGPHFVTQKALSRLRDGGRIVNIGSMSGKVGQPFAASYAMTKRAIQSLTFSTALAVAKR
CCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RITCNCIAPGAVATDFIAGLRAKPGWDEATAKHTPMGRLGEPDDIAGAVMMLLGDDARWV
CEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEEECCCCCEE
TGQVIEASGGLAL
EEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]