| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is paaG [H]
Identifier: 103486342
GI number: 103486342
Start: 859857
End: 860654
Strand: Direct
Name: paaG [H]
Synonym: Sala_0852
Alternate gene names: 103486342
Gene position: 859857-860654 (Clockwise)
Preceding gene: 103486341
Following gene: 103486343
Centisome position: 25.7
GC content: 63.28
Gene sequence:
>798_bases ATGTCCGAACTGCTGATCGAAGATGATGCGGGGGTCCGCATCATAACGCTCAACCGGCCCGACCGTTTGAATGCGCTTAC CGGTTCGATCATGGCATCGCTTGCCGATGCCTGCGCCGACGCCGCGCGCGATGCGTCGGTGGGCTGTGTCGTCGTGACCG GCGCGGGCCGTGGCTTTTGCGCGGGCGGCGACCTGAAGGAAGGCGGTGCCGACAAGGCCGTGGTGCCGCCGAACGCCGAG GCAGGCAGCCGAACCGAACAGAGTTTCGCCCGGCTGCGCGGCTTTATGGAAACCTCGCGTCTCCTCCATGAAATGCCCAA GCCGACCATCGCGATGGTCAATGGCCCGGTGGCCGGGGCTGGAATAGGCATCGCGGGGGCCTGCGATCTGCGCTTCGCGT CGAAAAGCGCTACCTTTCTGACCGCTTTTGACCGGATCGGGGCGGGGGGCGATTTTGGTTCGACCTGGTTCTGGACCAAG ATTCTGGGCACCGGGGTGGCGCGCGAGCTGTTCTTCCTTGGCGAAAAATTGTCGGCCGAGGAGGCGTTCGCCAAGGGCAT TTATACGCGCTTGTTTGAAGAAGCGGACTTGCGCCCGGAAACGATGCAGGCCGCCCGCCGCCTCGCCGACGGGCCACGCA TGGGCTATCGGTACATGAAGGCGAACCTCAACAATGCGGAAGATTGGGCCTTCGAAGCCGCGCTTGATGCCGAAGCATTG AACATGGGGCTTTCGACCGGCGCAACCGCGTTGATCTGGCGCGAAAAGAAAAAGCGGGAAGAACAGGGCGGTGGCTGA
Upstream 100 bases:
>100_bases CGAAAAGGCGGTCAAGATGCTCGCCCGGCACCGCGAACTCGGCGGGGATTGATCCGCTCCTCCATTCCTTCGAAAAGATC GGAACAGAGAGGGGGCTGCC
Downstream 100 bases:
>100_bases ACCCGACCATATTCGCATCGAACGCCGCGAGCATGGAATCGCAGCCGTTGTGGTGGATCGCGCCGACATCGGCAATGCCT CCTCGCCCGAAATGCTGGGC
Product: enoyl-CoA hydratase/isomerase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MSELLIEDDAGVRIITLNRPDRLNALTGSIMASLADACADAARDASVGCVVVTGAGRGFCAGGDLKEGGADKAVVPPNAE AGSRTEQSFARLRGFMETSRLLHEMPKPTIAMVNGPVAGAGIGIAGACDLRFASKSATFLTAFDRIGAGGDFGSTWFWTK ILGTGVARELFFLGEKLSAEEAFAKGIYTRLFEEADLRPETMQAARRLADGPRMGYRYMKANLNNAEDWAFEAALDAEAL NMGLSTGATALIWREKKKREEQGGG
Sequences:
>Translated_265_residues MSELLIEDDAGVRIITLNRPDRLNALTGSIMASLADACADAARDASVGCVVVTGAGRGFCAGGDLKEGGADKAVVPPNAE AGSRTEQSFARLRGFMETSRLLHEMPKPTIAMVNGPVAGAGIGIAGACDLRFASKSATFLTAFDRIGAGGDFGSTWFWTK ILGTGVARELFFLGEKLSAEEAFAKGIYTRLFEEADLRPETMQAARRLADGPRMGYRYMKANLNNAEDWAFEAALDAEAL NMGLSTGATALIWREKKKREEQGGG >Mature_264_residues SELLIEDDAGVRIITLNRPDRLNALTGSIMASLADACADAARDASVGCVVVTGAGRGFCAGGDLKEGGADKAVVPPNAEA GSRTEQSFARLRGFMETSRLLHEMPKPTIAMVNGPVAGAGIGIAGACDLRFASKSATFLTAFDRIGAGGDFGSTWFWTKI LGTGVARELFFLGEKLSAEEAFAKGIYTRLFEEADLRPETMQAARRLADGPRMGYRYMKANLNNAEDWAFEAALDAEALN MGLSTGATALIWREKKKREEQGGG
Specific function: Could possibly oxidize fatty acids using specific components [H]
COG id: COG1024
COG function: function code I; Enoyl-CoA hydratase/carnithine racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI45643119, Length=239, Percent_Identity=28.8702928870293, Blast_Score=100, Evalue=9e-22, Organism=Homo sapiens, GI260275230, Length=239, Percent_Identity=28.8702928870293, Blast_Score=100, Evalue=9e-22, Organism=Homo sapiens, GI260274832, Length=239, Percent_Identity=28.8702928870293, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI70995211, Length=230, Percent_Identity=27.3913043478261, Blast_Score=96, Evalue=2e-20, Organism=Homo sapiens, GI31542718, Length=260, Percent_Identity=29.2307692307692, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI194097323, Length=217, Percent_Identity=29.4930875576037, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI25453481, Length=206, Percent_Identity=29.126213592233, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI51538573, Length=206, Percent_Identity=29.126213592233, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI4757966, Length=206, Percent_Identity=29.126213592233, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI51538581, Length=206, Percent_Identity=29.126213592233, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI4757968, Length=206, Percent_Identity=28.1553398058252, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI49355787, Length=206, Percent_Identity=28.1553398058252, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI221136756, Length=208, Percent_Identity=28.8461538461538, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI221136753, Length=208, Percent_Identity=28.8461538461538, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI221307494, Length=208, Percent_Identity=28.8461538461538, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI116235487, Length=188, Percent_Identity=28.7234042553192, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI37594469, Length=196, Percent_Identity=26.0204081632653, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI37594471, Length=196, Percent_Identity=26.0204081632653, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI213417737, Length=237, Percent_Identity=24.0506329113924, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI157694516, Length=237, Percent_Identity=24.0506329113924, Blast_Score=68, Evalue=8e-12, Organism=Escherichia coli, GI1787660, Length=238, Percent_Identity=36.5546218487395, Blast_Score=128, Evalue=3e-31, Organism=Escherichia coli, GI1788597, Length=252, Percent_Identity=30.1587301587302, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1787659, Length=239, Percent_Identity=31.3807531380753, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI87082183, Length=215, Percent_Identity=26.046511627907, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI221142681, Length=236, Percent_Identity=27.1186440677966, Blast_Score=70, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17554946, Length=233, Percent_Identity=30.4721030042918, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI25145438, Length=228, Percent_Identity=30.7017543859649, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17536985, Length=258, Percent_Identity=25.5813953488372, Blast_Score=94, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17534483, Length=231, Percent_Identity=29.004329004329, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17549921, Length=234, Percent_Identity=30.3418803418803, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17535521, Length=210, Percent_Identity=26.1904761904762, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17560910, Length=256, Percent_Identity=24.609375, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17540714, Length=246, Percent_Identity=25.2032520325203, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI25144160, Length=199, Percent_Identity=25.6281407035176, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI25144157, Length=199, Percent_Identity=25.6281407035176, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24654903, Length=210, Percent_Identity=27.1428571428571, Blast_Score=91, Evalue=8e-19, Organism=Drosophila melanogaster, GI20129971, Length=229, Percent_Identity=27.5109170305677, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24653477, Length=229, Percent_Identity=27.5109170305677, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI19922422, Length=248, Percent_Identity=27.8225806451613, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI19920382, Length=186, Percent_Identity=28.494623655914, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24653139, Length=234, Percent_Identity=28.6324786324786, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI21357171, Length=238, Percent_Identity=24.7899159663866, Blast_Score=68, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001753 - InterPro: IPR011968 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.2.1.17 [H]
Molecular weight: Translated: 28137; Mature: 28006
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSELLIEDDAGVRIITLNRPDRLNALTGSIMASLADACADAARDASVGCVVVTGAGRGFC CCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEE AGGDLKEGGADKAVVPPNAEAGSRTEQSFARLRGFMETSRLLHEMPKPTIAMVNGPVAGA CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC GIGIAGACDLRFASKSATFLTAFDRIGAGGDFGSTWFWTKILGTGVARELFFLGEKLSAE CCCCCCEECEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH EAFAKGIYTRLFEEADLRPETMQAARRLADGPRMGYRYMKANLNNAEDWAFEAALDAEAL HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHCHHHEECCCCCCHHHHHHHHHHHHHH NMGLSTGATALIWREKKKREEQGGG HCCCCCCCEEEEECHHHHHHHCCCC >Mature Secondary Structure SELLIEDDAGVRIITLNRPDRLNALTGSIMASLADACADAARDASVGCVVVTGAGRGFC CCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEE AGGDLKEGGADKAVVPPNAEAGSRTEQSFARLRGFMETSRLLHEMPKPTIAMVNGPVAGA CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC GIGIAGACDLRFASKSATFLTAFDRIGAGGDFGSTWFWTKILGTGVARELFFLGEKLSAE CCCCCCEECEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH EAFAKGIYTRLFEEADLRPETMQAARRLADGPRMGYRYMKANLNNAEDWAFEAALDAEAL HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHCHHHEECCCCCCHHHHHHHHHHHHHH NMGLSTGATALIWREKKKREEQGGG HCCCCCCCEEEEECHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9748275; 9097039; 9278503; 10766858 [H]