| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yhgE [H]
Identifier: 103486329
GI number: 103486329
Start: 845068
End: 846840
Strand: Direct
Name: yhgE [H]
Synonym: Sala_0839
Alternate gene names: 103486329
Gene position: 845068-846840 (Clockwise)
Preceding gene: 103486321
Following gene: 103486330
Centisome position: 25.26
GC content: 68.53
Gene sequence:
>1773_bases ATGTGGGGCATGACCGATGCGCCTGCAAGCCCGCCCGTTCCCGATTCGCCGCGCCCTTCCGCGCGCCTCGACGGCAGCGA CCCGCCGTGGCCGCTGCGGCCGTGGATCATGGCGGCGATCTGCGCCGCGGCAGGGCTGATCTTTCACCTGCTGGTCGATC ATGATTATCCCTACGCGCTGGAGCCATGGCGCAGCGCGCTGGCGACCGCGGTCGCAGTGGCGACATTGGTGTTCGTGCTG GGGGTTGAACTCAGGCGCTGGCACTGGGCGCTCGGCTTTGCGCTGGGCTGGGGCGCGATCCTGGGGCTGATCGCGTGGCA AACCGCGGCCTATAATTTACAGGGCAATGCGGTCGAATGGCCCTTCTGGTCGGGGGTGCTCGCGGTGCTCGTCGCGACGC CGCTGTTCCAGACGCGGCGCGACGTCGCACCCGACTGGCGCTTCTGGACGCTGTGGACGATGCCCTATGACCGGCTGCAC AGCCATGCATGGACCGATGCGGTGATCGGCGCGGCGGGCGTTGCGTTCGTCGGCATCACCTTTCTGCTCACCGTTCTGAT CGGGCAGATGTTCAAGCTCATCGGGATCAACCTGATCTTCGACCTTTTGAACGACGAATGGTTCGGCTGGATGCTCGCGG GCGCGGCGTTCGGGGGCGCGGTCGGCTTGTTGCGCGAGCGCGACAAGCTGGTTTCGACCTTGCAGCGGCTGGTGATGATC GTACTCGCGGTGCTCGCGCCGGTGCTCGCGGTCGCGCTCGTGCTGTTCCTGCTGTCGCTCGCCGGGACGGGGTTGCAGAA GCTGTGGGATTCGGGCTTTTCGACCGCGGCGGTGATGATGGCGGTCGCGGCCTTCGCGGTGCTGCTCGCCAATGCGGTGA TCGGCAACGGCAGCGACGACCGCGCGACGAGCCCCGCGTTGCGCTGGGCGGCGCCGGTGCTCGCCGTTGCGGTGCTGCCG CTCGCAGCGATTGCCTTTTATTCGATGCACCTGCGCGTCATCCAGTACGGCTGGACGCCCGGACGCATCTGGGGCGTGAT CGCGGCGATGATTGCGCTCGCCTATGGGCTTGCCGGGCTGTGGGCGGTGGTGCGCGGCCGGCGCGATTTCGACGACTGGC TGCGGCCCTTGCAGCAGAAGCTGGCGATCGCGCTGATGCTGCTCGCGCTGTTCCTCGCGTTGCCGATCGTCGATTTCGGG GCGATTTCGACGCGCGACCAGCTCGCGCGGCTGAAATCGGGGGCGGTGTCGGCGGAACAGTTTGACTGGGCGGCGATGGC GTTCGATTTCGGGCCCGCCGGGCGCGCGGCGCTGACGGAACTCGCGCGCTCGCCCGACGGGGCGCGTGCCGACGCGGCGA AGGCGGCGCTGGCGGCGAAGAATCGCTGGGATCTGGCGGGACCGCGCGGCGCGCTGCCGCTGCCGCCACTGGCCGAGCGG CTGCGCGTCATCCCCGATGGGCGTTCGCTGTCGCCCGAAGCACTCGATCGCATCGCGCAAAGCCATATGTGCAGCCGGAC CAGGGCCTGCGCCGCGGTGTGGATCGACGACCGGCGGATTGCCGTGCTGGGGCAGAATGAACCCGGTGAAGCGATGCGCC TCGATTTCGTTACGCAGAATGCGGCGGGTCAGTGGGTGATCGGCGATCCCGCCCTGGCGGCGGGCGATCAGAAACGGGCC GTGGACCTGTCGAAGGCGCGAATCGCGATCGAGACGGTCGAGCAGCGCCGCATAACGGTCGATGGCGTGCCGCAATCGCC CGGTTTCGACTAG
Upstream 100 bases:
>100_bases ATGGGAGGGGGAGATTTGCGGGTCTCTAGCCGGTCCAGACAGGCCCTTCAAATATCTCGTCACCCCGAATCTGTTTCAGC ATGACGATTTTCCAACGTAG
Downstream 100 bases:
>100_bases CCGCCGCTTGAAGCGGGCGGGGCGCGGTGCTAGCGGCGCCTCTTCTCCCGCAAAGGCAGGAATCAATGGCAATCGATCAG GCAACAGTGAGGAAAATCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 590; Mature: 590
Protein sequence:
>590_residues MWGMTDAPASPPVPDSPRPSARLDGSDPPWPLRPWIMAAICAAAGLIFHLLVDHDYPYALEPWRSALATAVAVATLVFVL GVELRRWHWALGFALGWGAILGLIAWQTAAYNLQGNAVEWPFWSGVLAVLVATPLFQTRRDVAPDWRFWTLWTMPYDRLH SHAWTDAVIGAAGVAFVGITFLLTVLIGQMFKLIGINLIFDLLNDEWFGWMLAGAAFGGAVGLLRERDKLVSTLQRLVMI VLAVLAPVLAVALVLFLLSLAGTGLQKLWDSGFSTAAVMMAVAAFAVLLANAVIGNGSDDRATSPALRWAAPVLAVAVLP LAAIAFYSMHLRVIQYGWTPGRIWGVIAAMIALAYGLAGLWAVVRGRRDFDDWLRPLQQKLAIALMLLALFLALPIVDFG AISTRDQLARLKSGAVSAEQFDWAAMAFDFGPAGRAALTELARSPDGARADAAKAALAAKNRWDLAGPRGALPLPPLAER LRVIPDGRSLSPEALDRIAQSHMCSRTRACAAVWIDDRRIAVLGQNEPGEAMRLDFVTQNAAGQWVIGDPALAAGDQKRA VDLSKARIAIETVEQRRITVDGVPQSPGFD
Sequences:
>Translated_590_residues MWGMTDAPASPPVPDSPRPSARLDGSDPPWPLRPWIMAAICAAAGLIFHLLVDHDYPYALEPWRSALATAVAVATLVFVL GVELRRWHWALGFALGWGAILGLIAWQTAAYNLQGNAVEWPFWSGVLAVLVATPLFQTRRDVAPDWRFWTLWTMPYDRLH SHAWTDAVIGAAGVAFVGITFLLTVLIGQMFKLIGINLIFDLLNDEWFGWMLAGAAFGGAVGLLRERDKLVSTLQRLVMI VLAVLAPVLAVALVLFLLSLAGTGLQKLWDSGFSTAAVMMAVAAFAVLLANAVIGNGSDDRATSPALRWAAPVLAVAVLP LAAIAFYSMHLRVIQYGWTPGRIWGVIAAMIALAYGLAGLWAVVRGRRDFDDWLRPLQQKLAIALMLLALFLALPIVDFG AISTRDQLARLKSGAVSAEQFDWAAMAFDFGPAGRAALTELARSPDGARADAAKAALAAKNRWDLAGPRGALPLPPLAER LRVIPDGRSLSPEALDRIAQSHMCSRTRACAAVWIDDRRIAVLGQNEPGEAMRLDFVTQNAAGQWVIGDPALAAGDQKRA VDLSKARIAIETVEQRRITVDGVPQSPGFD >Mature_590_residues MWGMTDAPASPPVPDSPRPSARLDGSDPPWPLRPWIMAAICAAAGLIFHLLVDHDYPYALEPWRSALATAVAVATLVFVL GVELRRWHWALGFALGWGAILGLIAWQTAAYNLQGNAVEWPFWSGVLAVLVATPLFQTRRDVAPDWRFWTLWTMPYDRLH SHAWTDAVIGAAGVAFVGITFLLTVLIGQMFKLIGINLIFDLLNDEWFGWMLAGAAFGGAVGLLRERDKLVSTLQRLVMI VLAVLAPVLAVALVLFLLSLAGTGLQKLWDSGFSTAAVMMAVAAFAVLLANAVIGNGSDDRATSPALRWAAPVLAVAVLP LAAIAFYSMHLRVIQYGWTPGRIWGVIAAMIALAYGLAGLWAVVRGRRDFDDWLRPLQQKLAIALMLLALFLALPIVDFG AISTRDQLARLKSGAVSAEQFDWAAMAFDFGPAGRAALTELARSPDGARADAAKAALAAKNRWDLAGPRGALPLPPLAER LRVIPDGRSLSPEALDRIAQSHMCSRTRACAAVWIDDRRIAVLGQNEPGEAMRLDFVTQNAAGQWVIGDPALAAGDQKRA VDLSKARIAIETVEQRRITVDGVPQSPGFD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis yrdB [H]
Homologues:
Organism=Escherichia coli, GI1789805, Length=534, Percent_Identity=25.8426966292135, Blast_Score=70, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63740; Mature: 63740
Theoretical pI: Translated: 8.10; Mature: 8.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWGMTDAPASPPVPDSPRPSARLDGSDPPWPLRPWIMAAICAAAGLIFHLLVDHDYPYAL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH EPWRSALATAVAVATLVFVLGVELRRWHWALGFALGWGAILGLIAWQTAAYNLQGNAVEW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEECC PFWSGVLAVLVATPLFQTRRDVAPDWRFWTLWTMPYDRLHSHAWTDAVIGAAGVAFVGIT CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH FLLTVLIGQMFKLIGINLIFDLLNDEWFGWMLAGAAFGGAVGLLRERDKLVSTLQRLVMI HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLAVLAPVLAVALVLFLLSLAGTGLQKLWDSGFSTAAVMMAVAAFAVLLANAVIGNGSDD HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC RATSPALRWAAPVLAVAVLPLAAIAFYSMHLRVIQYGWTPGRIWGVIAAMIALAYGLAGL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHH WAVVRGRRDFDDWLRPLQQKLAIALMLLALFLALPIVDFGAISTRDQLARLKSGAVSAEQ HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHH FDWAAMAFDFGPAGRAALTELARSPDGARADAAKAALAAKNRWDLAGPRGALPLPPLAER CCHHHHEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH LRVIPDGRSLSPEALDRIAQSHMCSRTRACAAVWIDDRRIAVLGQNEPGEAMRLDFVTQN HEECCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEECCCCCCCEEEEEEECC AAGQWVIGDPALAAGDQKRAVDLSKARIAIETVEQRRITVDGVPQSPGFD CCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCC >Mature Secondary Structure MWGMTDAPASPPVPDSPRPSARLDGSDPPWPLRPWIMAAICAAAGLIFHLLVDHDYPYAL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH EPWRSALATAVAVATLVFVLGVELRRWHWALGFALGWGAILGLIAWQTAAYNLQGNAVEW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEECC PFWSGVLAVLVATPLFQTRRDVAPDWRFWTLWTMPYDRLHSHAWTDAVIGAAGVAFVGIT CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH FLLTVLIGQMFKLIGINLIFDLLNDEWFGWMLAGAAFGGAVGLLRERDKLVSTLQRLVMI HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLAVLAPVLAVALVLFLLSLAGTGLQKLWDSGFSTAAVMMAVAAFAVLLANAVIGNGSDD HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC RATSPALRWAAPVLAVAVLPLAAIAFYSMHLRVIQYGWTPGRIWGVIAAMIALAYGLAGL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHH WAVVRGRRDFDDWLRPLQQKLAIALMLLALFLALPIVDFGAISTRDQLARLKSGAVSAEQ HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHH FDWAAMAFDFGPAGRAALTELARSPDGARADAAKAALAAKNRWDLAGPRGALPLPPLAER CCHHHHEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH LRVIPDGRSLSPEALDRIAQSHMCSRTRACAAVWIDDRRIAVLGQNEPGEAMRLDFVTQN HEECCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEECCCCCCCEEEEEEECC AAGQWVIGDPALAAGDQKRAVDLSKARIAIETVEQRRITVDGVPQSPGFD CCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]