Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is yhgE [H]

Identifier: 103486329

GI number: 103486329

Start: 845068

End: 846840

Strand: Direct

Name: yhgE [H]

Synonym: Sala_0839

Alternate gene names: 103486329

Gene position: 845068-846840 (Clockwise)

Preceding gene: 103486321

Following gene: 103486330

Centisome position: 25.26

GC content: 68.53

Gene sequence:

>1773_bases
ATGTGGGGCATGACCGATGCGCCTGCAAGCCCGCCCGTTCCCGATTCGCCGCGCCCTTCCGCGCGCCTCGACGGCAGCGA
CCCGCCGTGGCCGCTGCGGCCGTGGATCATGGCGGCGATCTGCGCCGCGGCAGGGCTGATCTTTCACCTGCTGGTCGATC
ATGATTATCCCTACGCGCTGGAGCCATGGCGCAGCGCGCTGGCGACCGCGGTCGCAGTGGCGACATTGGTGTTCGTGCTG
GGGGTTGAACTCAGGCGCTGGCACTGGGCGCTCGGCTTTGCGCTGGGCTGGGGCGCGATCCTGGGGCTGATCGCGTGGCA
AACCGCGGCCTATAATTTACAGGGCAATGCGGTCGAATGGCCCTTCTGGTCGGGGGTGCTCGCGGTGCTCGTCGCGACGC
CGCTGTTCCAGACGCGGCGCGACGTCGCACCCGACTGGCGCTTCTGGACGCTGTGGACGATGCCCTATGACCGGCTGCAC
AGCCATGCATGGACCGATGCGGTGATCGGCGCGGCGGGCGTTGCGTTCGTCGGCATCACCTTTCTGCTCACCGTTCTGAT
CGGGCAGATGTTCAAGCTCATCGGGATCAACCTGATCTTCGACCTTTTGAACGACGAATGGTTCGGCTGGATGCTCGCGG
GCGCGGCGTTCGGGGGCGCGGTCGGCTTGTTGCGCGAGCGCGACAAGCTGGTTTCGACCTTGCAGCGGCTGGTGATGATC
GTACTCGCGGTGCTCGCGCCGGTGCTCGCGGTCGCGCTCGTGCTGTTCCTGCTGTCGCTCGCCGGGACGGGGTTGCAGAA
GCTGTGGGATTCGGGCTTTTCGACCGCGGCGGTGATGATGGCGGTCGCGGCCTTCGCGGTGCTGCTCGCCAATGCGGTGA
TCGGCAACGGCAGCGACGACCGCGCGACGAGCCCCGCGTTGCGCTGGGCGGCGCCGGTGCTCGCCGTTGCGGTGCTGCCG
CTCGCAGCGATTGCCTTTTATTCGATGCACCTGCGCGTCATCCAGTACGGCTGGACGCCCGGACGCATCTGGGGCGTGAT
CGCGGCGATGATTGCGCTCGCCTATGGGCTTGCCGGGCTGTGGGCGGTGGTGCGCGGCCGGCGCGATTTCGACGACTGGC
TGCGGCCCTTGCAGCAGAAGCTGGCGATCGCGCTGATGCTGCTCGCGCTGTTCCTCGCGTTGCCGATCGTCGATTTCGGG
GCGATTTCGACGCGCGACCAGCTCGCGCGGCTGAAATCGGGGGCGGTGTCGGCGGAACAGTTTGACTGGGCGGCGATGGC
GTTCGATTTCGGGCCCGCCGGGCGCGCGGCGCTGACGGAACTCGCGCGCTCGCCCGACGGGGCGCGTGCCGACGCGGCGA
AGGCGGCGCTGGCGGCGAAGAATCGCTGGGATCTGGCGGGACCGCGCGGCGCGCTGCCGCTGCCGCCACTGGCCGAGCGG
CTGCGCGTCATCCCCGATGGGCGTTCGCTGTCGCCCGAAGCACTCGATCGCATCGCGCAAAGCCATATGTGCAGCCGGAC
CAGGGCCTGCGCCGCGGTGTGGATCGACGACCGGCGGATTGCCGTGCTGGGGCAGAATGAACCCGGTGAAGCGATGCGCC
TCGATTTCGTTACGCAGAATGCGGCGGGTCAGTGGGTGATCGGCGATCCCGCCCTGGCGGCGGGCGATCAGAAACGGGCC
GTGGACCTGTCGAAGGCGCGAATCGCGATCGAGACGGTCGAGCAGCGCCGCATAACGGTCGATGGCGTGCCGCAATCGCC
CGGTTTCGACTAG

Upstream 100 bases:

>100_bases
ATGGGAGGGGGAGATTTGCGGGTCTCTAGCCGGTCCAGACAGGCCCTTCAAATATCTCGTCACCCCGAATCTGTTTCAGC
ATGACGATTTTCCAACGTAG

Downstream 100 bases:

>100_bases
CCGCCGCTTGAAGCGGGCGGGGCGCGGTGCTAGCGGCGCCTCTTCTCCCGCAAAGGCAGGAATCAATGGCAATCGATCAG
GCAACAGTGAGGAAAATCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 590; Mature: 590

Protein sequence:

>590_residues
MWGMTDAPASPPVPDSPRPSARLDGSDPPWPLRPWIMAAICAAAGLIFHLLVDHDYPYALEPWRSALATAVAVATLVFVL
GVELRRWHWALGFALGWGAILGLIAWQTAAYNLQGNAVEWPFWSGVLAVLVATPLFQTRRDVAPDWRFWTLWTMPYDRLH
SHAWTDAVIGAAGVAFVGITFLLTVLIGQMFKLIGINLIFDLLNDEWFGWMLAGAAFGGAVGLLRERDKLVSTLQRLVMI
VLAVLAPVLAVALVLFLLSLAGTGLQKLWDSGFSTAAVMMAVAAFAVLLANAVIGNGSDDRATSPALRWAAPVLAVAVLP
LAAIAFYSMHLRVIQYGWTPGRIWGVIAAMIALAYGLAGLWAVVRGRRDFDDWLRPLQQKLAIALMLLALFLALPIVDFG
AISTRDQLARLKSGAVSAEQFDWAAMAFDFGPAGRAALTELARSPDGARADAAKAALAAKNRWDLAGPRGALPLPPLAER
LRVIPDGRSLSPEALDRIAQSHMCSRTRACAAVWIDDRRIAVLGQNEPGEAMRLDFVTQNAAGQWVIGDPALAAGDQKRA
VDLSKARIAIETVEQRRITVDGVPQSPGFD

Sequences:

>Translated_590_residues
MWGMTDAPASPPVPDSPRPSARLDGSDPPWPLRPWIMAAICAAAGLIFHLLVDHDYPYALEPWRSALATAVAVATLVFVL
GVELRRWHWALGFALGWGAILGLIAWQTAAYNLQGNAVEWPFWSGVLAVLVATPLFQTRRDVAPDWRFWTLWTMPYDRLH
SHAWTDAVIGAAGVAFVGITFLLTVLIGQMFKLIGINLIFDLLNDEWFGWMLAGAAFGGAVGLLRERDKLVSTLQRLVMI
VLAVLAPVLAVALVLFLLSLAGTGLQKLWDSGFSTAAVMMAVAAFAVLLANAVIGNGSDDRATSPALRWAAPVLAVAVLP
LAAIAFYSMHLRVIQYGWTPGRIWGVIAAMIALAYGLAGLWAVVRGRRDFDDWLRPLQQKLAIALMLLALFLALPIVDFG
AISTRDQLARLKSGAVSAEQFDWAAMAFDFGPAGRAALTELARSPDGARADAAKAALAAKNRWDLAGPRGALPLPPLAER
LRVIPDGRSLSPEALDRIAQSHMCSRTRACAAVWIDDRRIAVLGQNEPGEAMRLDFVTQNAAGQWVIGDPALAAGDQKRA
VDLSKARIAIETVEQRRITVDGVPQSPGFD
>Mature_590_residues
MWGMTDAPASPPVPDSPRPSARLDGSDPPWPLRPWIMAAICAAAGLIFHLLVDHDYPYALEPWRSALATAVAVATLVFVL
GVELRRWHWALGFALGWGAILGLIAWQTAAYNLQGNAVEWPFWSGVLAVLVATPLFQTRRDVAPDWRFWTLWTMPYDRLH
SHAWTDAVIGAAGVAFVGITFLLTVLIGQMFKLIGINLIFDLLNDEWFGWMLAGAAFGGAVGLLRERDKLVSTLQRLVMI
VLAVLAPVLAVALVLFLLSLAGTGLQKLWDSGFSTAAVMMAVAAFAVLLANAVIGNGSDDRATSPALRWAAPVLAVAVLP
LAAIAFYSMHLRVIQYGWTPGRIWGVIAAMIALAYGLAGLWAVVRGRRDFDDWLRPLQQKLAIALMLLALFLALPIVDFG
AISTRDQLARLKSGAVSAEQFDWAAMAFDFGPAGRAALTELARSPDGARADAAKAALAAKNRWDLAGPRGALPLPPLAER
LRVIPDGRSLSPEALDRIAQSHMCSRTRACAAVWIDDRRIAVLGQNEPGEAMRLDFVTQNAAGQWVIGDPALAAGDQKRA
VDLSKARIAIETVEQRRITVDGVPQSPGFD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis yrdB [H]

Homologues:

Organism=Escherichia coli, GI1789805, Length=534, Percent_Identity=25.8426966292135, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63740; Mature: 63740

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCC
>Mature Secondary Structure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CCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]