| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is rec2 [H]
Identifier: 103486321
GI number: 103486321
Start: 836189
End: 838348
Strand: Direct
Name: rec2 [H]
Synonym: Sala_0831
Alternate gene names: 103486321
Gene position: 836189-838348 (Clockwise)
Preceding gene: 103486318
Following gene: 103486329
Centisome position: 25.0
GC content: 72.45
Gene sequence:
>2160_bases ATGGCGACAAGTCCGCTTCAAACGCCCATTGCACCTGATCGCGTGGGCAGGTGGACGCGGCTCGCCGCGGCGCTTGAGGC GCGGCTGGAGGCGGAGCGCGAACGCATCGGCCTGTGGCTCCCCGTCGCGCTGGGCGCGGGCATCGCCGCGTGGCTCGCGC TGCCGGCAAAGGCGCACTGGATCGGCCTTTTGCTCCTGCTTGCCGCAGGGGTGCTCGGCGGGCTGCTGATCGGCTGGGGC ACCCGCACGGGGCGGTCGCTTGCGGTCGGCTGCGGCGTAATGGCGGTGGGGATGCTGCTGATCTGGGGCCGCGCGCTGTG GGTCGCGGCGCCGGTGCTCGCCCAGCCGGTCGTGACCCAATTTTCCGCCATTGTCGAGCGCGTCGAACCGCGGCCCGCCA GGGGCCAGGTGCGCATCCTCGCCCGGCCAAGCGCGCGCGCCGACCTGCCGCCGCGCATCCGGCTGACCCTGCGGACCGAG CAGGCGGGCGATCTGGTGGCGGGCGAGGCGATCGGGGTGCGGGCGCGGCTGATGCCGCCGCCGACCGCGAGCCTGCCCGG CGGCTATGATTTTGCACAGCGCGCCTGGTTCGACGGCATCGGCGCGGTCGGCACCGTGCTCGGCGGTGTCGTGCGCGCGC CGGGACGGGGGAGCGCCGCGCCACCGCTGCGCGCGCGGCTGAGCGCACATATCCACCGCCAGGTCGATGGTTCGGCGGGC GGCATCGCGGCGGCGCTGGTCACGGGCGACCGCGGCGCGATTTCCGAAGCCGACGAAGAGGCGATGCGGCGGAGCGGGCT CGCGCACCTGCTGTCGATCAGCGGGCTGCACGTCACCGCGGTCGTCGGTTTTGCCATGCTGCTGACGATGCGTCTGCTCG CGCTGAGCCCGCGGCTCGCGCTCGCGGGCCTCGTCCTTCCGCTCGCCGCGGCGGCAGCGGCGCTCGCGGGCGGGGGCTAT ACCTTGCTCGCCGGGGCCGAGGTGCCGACCTTGCGTTCGTTCATCGCCGCGCTGCTCGTGCTTATCGCCTTCCTGATGGG GCGCGAGGCGCTGACCCTGCGGCTTGTCGCGGCGGGCGCGCTCATCGTGCTCATGTGGCGGCCCGAGGCGCTCGCGGGGC CGAGTTTCCAGCTGAGCTTCGCCGCGGTGACCGCAATCGTGGCGCTCCACGAAAGTCCGGCGATGCAGGCGTTTCTCGCA CGCCGCGACGAATCCTGGGCCTTCCGGCTGGGGCGCGGCATCGCGGGCCTGCTTGCGACGGGCCTGGTCGTCGAAGTCGC GCTCACGCCGATCGCGCTGTTCCATTTCCACAAGGCGGGCCTTTATGGCGCACTCGCCAATGTCATCGCGATCCCGCTCA CGACCTTTGTCGTCATGCCCGCCGAGGCGCTCGCGCTGCTGTTCGACAGCGTCGGGCTCGGCGCGCCCTTCTGGTGGGTC GCCGAACAGGCGCTGCGGCTGCTGATCGCGCTCGCGCACAGCGTCGCAGGCGCGCCCGGCGCGGTGACGACGCTGCCCAG CTTTCCGCCGTGGGGCTTTGGCTTGACGCTTTTCGGCGGGCTCTGGATCCTGCTCTGGCAAACACGCTGGCGCCGCTGGG GGATGATCCCGCTCGCGGCGGGCGCTGCCGTGCTGCTGGCGCAGCCGCGCCCCGACCTGCTCGTCACCGGCGACGGGCGG CACATCGCTGTGCCCCTGCCCGACGGCACCTATGCGCTGCTCCGCGATCGCGCGGGCGATTATGTCCGCGACAGCATGGC CGAAGCGGCAGGAATCGACGCCCCGCTGGGCACGCTCGCCGATCTCGATCATGTCGAGTGCAACCGCGATTTCTGCCGCT GGGTCCAAGGTGCAGGCGCGGCGCGGCGCGTCATTCTGGCGTCGCGCGGGCGCGACCGGATCGAGGGGGCGGATATGGCC GCGGCGTGCGCCGCCGCCGATGTCGTGATCAGCGACCGCTGGCTGCCGCGCGAATGCGCCGGCCGCTGGCTCACGATCGA GCGCGATAGCCTGGCCGAAACCGGCGGGCTCGCGCTCTATCTTGGCGAACGGCCCAAAGCCGTCGCCACGCTAAAGTCCG GTGCCGAGCATCCGTGGCGTCGCCCGCAGCAGGTCAGTGGTAACGACGAAGCAGTCCCGACAGACGCCCCTGGACGATGA
Upstream 100 bases:
>100_bases GGGCGTGGCTGTTGCCACTCTGGTCGGATTTTCGGTTGCCACCGCGGCCTCTTTCACTCACTTTGCCGCCCGGTCGGGCG GGATCGGGGGTGCCCCTAGC
Downstream 100 bases:
>100_bases CGCGCTCGGCCGGGTAGCGTTGCGGTTCATAGGCGCTGTTTGCAGGGTCGAGCCGGATCATCTTGCCTTCGCGCCGAAAG AATTTGAGCGTCGCATCCTG
Product: ComEC/Rec2-related protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 719; Mature: 718
Protein sequence:
>719_residues MATSPLQTPIAPDRVGRWTRLAAALEARLEAERERIGLWLPVALGAGIAAWLALPAKAHWIGLLLLLAAGVLGGLLIGWG TRTGRSLAVGCGVMAVGMLLIWGRALWVAAPVLAQPVVTQFSAIVERVEPRPARGQVRILARPSARADLPPRIRLTLRTE QAGDLVAGEAIGVRARLMPPPTASLPGGYDFAQRAWFDGIGAVGTVLGGVVRAPGRGSAAPPLRARLSAHIHRQVDGSAG GIAAALVTGDRGAISEADEEAMRRSGLAHLLSISGLHVTAVVGFAMLLTMRLLALSPRLALAGLVLPLAAAAAALAGGGY TLLAGAEVPTLRSFIAALLVLIAFLMGREALTLRLVAAGALIVLMWRPEALAGPSFQLSFAAVTAIVALHESPAMQAFLA RRDESWAFRLGRGIAGLLATGLVVEVALTPIALFHFHKAGLYGALANVIAIPLTTFVVMPAEALALLFDSVGLGAPFWWV AEQALRLLIALAHSVAGAPGAVTTLPSFPPWGFGLTLFGGLWILLWQTRWRRWGMIPLAAGAAVLLAQPRPDLLVTGDGR HIAVPLPDGTYALLRDRAGDYVRDSMAEAAGIDAPLGTLADLDHVECNRDFCRWVQGAGAARRVILASRGRDRIEGADMA AACAAADVVISDRWLPRECAGRWLTIERDSLAETGGLALYLGERPKAVATLKSGAEHPWRRPQQVSGNDEAVPTDAPGR
Sequences:
>Translated_719_residues MATSPLQTPIAPDRVGRWTRLAAALEARLEAERERIGLWLPVALGAGIAAWLALPAKAHWIGLLLLLAAGVLGGLLIGWG TRTGRSLAVGCGVMAVGMLLIWGRALWVAAPVLAQPVVTQFSAIVERVEPRPARGQVRILARPSARADLPPRIRLTLRTE QAGDLVAGEAIGVRARLMPPPTASLPGGYDFAQRAWFDGIGAVGTVLGGVVRAPGRGSAAPPLRARLSAHIHRQVDGSAG GIAAALVTGDRGAISEADEEAMRRSGLAHLLSISGLHVTAVVGFAMLLTMRLLALSPRLALAGLVLPLAAAAAALAGGGY TLLAGAEVPTLRSFIAALLVLIAFLMGREALTLRLVAAGALIVLMWRPEALAGPSFQLSFAAVTAIVALHESPAMQAFLA RRDESWAFRLGRGIAGLLATGLVVEVALTPIALFHFHKAGLYGALANVIAIPLTTFVVMPAEALALLFDSVGLGAPFWWV AEQALRLLIALAHSVAGAPGAVTTLPSFPPWGFGLTLFGGLWILLWQTRWRRWGMIPLAAGAAVLLAQPRPDLLVTGDGR HIAVPLPDGTYALLRDRAGDYVRDSMAEAAGIDAPLGTLADLDHVECNRDFCRWVQGAGAARRVILASRGRDRIEGADMA AACAAADVVISDRWLPRECAGRWLTIERDSLAETGGLALYLGERPKAVATLKSGAEHPWRRPQQVSGNDEAVPTDAPGR >Mature_718_residues ATSPLQTPIAPDRVGRWTRLAAALEARLEAERERIGLWLPVALGAGIAAWLALPAKAHWIGLLLLLAAGVLGGLLIGWGT RTGRSLAVGCGVMAVGMLLIWGRALWVAAPVLAQPVVTQFSAIVERVEPRPARGQVRILARPSARADLPPRIRLTLRTEQ AGDLVAGEAIGVRARLMPPPTASLPGGYDFAQRAWFDGIGAVGTVLGGVVRAPGRGSAAPPLRARLSAHIHRQVDGSAGG IAAALVTGDRGAISEADEEAMRRSGLAHLLSISGLHVTAVVGFAMLLTMRLLALSPRLALAGLVLPLAAAAAALAGGGYT LLAGAEVPTLRSFIAALLVLIAFLMGREALTLRLVAAGALIVLMWRPEALAGPSFQLSFAAVTAIVALHESPAMQAFLAR RDESWAFRLGRGIAGLLATGLVVEVALTPIALFHFHKAGLYGALANVIAIPLTTFVVMPAEALALLFDSVGLGAPFWWVA EQALRLLIALAHSVAGAPGAVTTLPSFPPWGFGLTLFGGLWILLWQTRWRRWGMIPLAAGAAVLLAQPRPDLLVTGDGRH IAVPLPDGTYALLRDRAGDYVRDSMAEAAGIDAPLGTLADLDHVECNRDFCRWVQGAGAARRVILASRGRDRIEGADMAA ACAAADVVISDRWLPRECAGRWLTIERDSLAETGGLALYLGERPKAVATLKSGAEHPWRRPQQVSGNDEAVPTDAPGR
Specific function: Might contribute to transformation as a member of a membrane-bound pore complex at the base of the transformasome. It could directly interact with transforming DNA during translocation indirectly by participating in the assembly of the pore [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 75502; Mature: 75371
Theoretical pI: Translated: 10.47; Mature: 10.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATSPLQTPIAPDRVGRWTRLAAALEARLEAERERIGLWLPVALGAGIAAWLALPAKAHW CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHCCCHHHH IGLLLLLAAGVLGGLLIGWGTRTGRSLAVGCGVMAVGMLLIWGRALWVAAPVLAQPVVTQ HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FSAIVERVEPRPARGQVRILARPSARADLPPRIRLTLRTEQAGDLVAGEAIGVRARLMPP HHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCEEECCCCCEEEEECCC PTASLPGGYDFAQRAWFDGIGAVGTVLGGVVRAPGRGSAAPPLRARLSAHIHRQVDGSAG CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCC GIAAALVTGDRGAISEADEEAMRRSGLAHLLSISGLHVTAVVGFAMLLTMRLLALSPRLA CEEEEEEECCCCCCCHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHH LAGLVLPLAAAAAALAGGGYTLLAGAEVPTLRSFIAALLVLIAFLMGREALTLRLVAAGA HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHEECCE LIVLMWRPEALAGPSFQLSFAAVTAIVALHESPAMQAFLARRDESWAFRLGRGIAGLLAT EEEEEECCHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH GLVVEVALTPIALFHFHKAGLYGALANVIAIPLTTFVVMPAEALALLFDSVGLGAPFWWV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH AEQALRLLIALAHSVAGAPGAVTTLPSFPPWGFGLTLFGGLWILLWQTRWRRWGMIPLAA HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECC GAAVLLAQPRPDLLVTGDGRHIAVPLPDGTYALLRDRAGDYVRDSMAEAAGIDAPLGTLA CCEEEEECCCCCEEEECCCCEEEEECCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCHHHH DLDHVECNRDFCRWVQGAGAARRVILASRGRDRIEGADMAAACAAADVVISDRWLPRECA CCCHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHC GRWLTIERDSLAETGGLALYLGERPKAVATLKSGAEHPWRRPQQVSGNDEAVPTDAPGR CCEEEEECHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure ATSPLQTPIAPDRVGRWTRLAAALEARLEAERERIGLWLPVALGAGIAAWLALPAKAHW CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHCCCHHHH IGLLLLLAAGVLGGLLIGWGTRTGRSLAVGCGVMAVGMLLIWGRALWVAAPVLAQPVVTQ HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FSAIVERVEPRPARGQVRILARPSARADLPPRIRLTLRTEQAGDLVAGEAIGVRARLMPP HHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCEEECCCCCEEEEECCC PTASLPGGYDFAQRAWFDGIGAVGTVLGGVVRAPGRGSAAPPLRARLSAHIHRQVDGSAG CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCC GIAAALVTGDRGAISEADEEAMRRSGLAHLLSISGLHVTAVVGFAMLLTMRLLALSPRLA CEEEEEEECCCCCCCHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHH LAGLVLPLAAAAAALAGGGYTLLAGAEVPTLRSFIAALLVLIAFLMGREALTLRLVAAGA HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHEECCE LIVLMWRPEALAGPSFQLSFAAVTAIVALHESPAMQAFLARRDESWAFRLGRGIAGLLAT EEEEEECCHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH GLVVEVALTPIALFHFHKAGLYGALANVIAIPLTTFVVMPAEALALLFDSVGLGAPFWWV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH AEQALRLLIALAHSVAGAPGAVTTLPSFPPWGFGLTLFGGLWILLWQTRWRRWGMIPLAA HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECC GAAVLLAQPRPDLLVTGDGRHIAVPLPDGTYALLRDRAGDYVRDSMAEAAGIDAPLGTLA CCEEEEECCCCCEEEECCCCEEEEECCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCHHHH DLDHVECNRDFCRWVQGAGAARRVILASRGRDRIEGADMAAACAAADVVISDRWLPRECA CCCHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHC GRWLTIERDSLAETGGLALYLGERPKAVATLKSGAEHPWRRPQQVSGNDEAVPTDAPGR CCEEEEECHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8063112; 7542800 [H]