Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is rec2 [H]

Identifier: 103486321

GI number: 103486321

Start: 836189

End: 838348

Strand: Direct

Name: rec2 [H]

Synonym: Sala_0831

Alternate gene names: 103486321

Gene position: 836189-838348 (Clockwise)

Preceding gene: 103486318

Following gene: 103486329

Centisome position: 25.0

GC content: 72.45

Gene sequence:

>2160_bases
ATGGCGACAAGTCCGCTTCAAACGCCCATTGCACCTGATCGCGTGGGCAGGTGGACGCGGCTCGCCGCGGCGCTTGAGGC
GCGGCTGGAGGCGGAGCGCGAACGCATCGGCCTGTGGCTCCCCGTCGCGCTGGGCGCGGGCATCGCCGCGTGGCTCGCGC
TGCCGGCAAAGGCGCACTGGATCGGCCTTTTGCTCCTGCTTGCCGCAGGGGTGCTCGGCGGGCTGCTGATCGGCTGGGGC
ACCCGCACGGGGCGGTCGCTTGCGGTCGGCTGCGGCGTAATGGCGGTGGGGATGCTGCTGATCTGGGGCCGCGCGCTGTG
GGTCGCGGCGCCGGTGCTCGCCCAGCCGGTCGTGACCCAATTTTCCGCCATTGTCGAGCGCGTCGAACCGCGGCCCGCCA
GGGGCCAGGTGCGCATCCTCGCCCGGCCAAGCGCGCGCGCCGACCTGCCGCCGCGCATCCGGCTGACCCTGCGGACCGAG
CAGGCGGGCGATCTGGTGGCGGGCGAGGCGATCGGGGTGCGGGCGCGGCTGATGCCGCCGCCGACCGCGAGCCTGCCCGG
CGGCTATGATTTTGCACAGCGCGCCTGGTTCGACGGCATCGGCGCGGTCGGCACCGTGCTCGGCGGTGTCGTGCGCGCGC
CGGGACGGGGGAGCGCCGCGCCACCGCTGCGCGCGCGGCTGAGCGCACATATCCACCGCCAGGTCGATGGTTCGGCGGGC
GGCATCGCGGCGGCGCTGGTCACGGGCGACCGCGGCGCGATTTCCGAAGCCGACGAAGAGGCGATGCGGCGGAGCGGGCT
CGCGCACCTGCTGTCGATCAGCGGGCTGCACGTCACCGCGGTCGTCGGTTTTGCCATGCTGCTGACGATGCGTCTGCTCG
CGCTGAGCCCGCGGCTCGCGCTCGCGGGCCTCGTCCTTCCGCTCGCCGCGGCGGCAGCGGCGCTCGCGGGCGGGGGCTAT
ACCTTGCTCGCCGGGGCCGAGGTGCCGACCTTGCGTTCGTTCATCGCCGCGCTGCTCGTGCTTATCGCCTTCCTGATGGG
GCGCGAGGCGCTGACCCTGCGGCTTGTCGCGGCGGGCGCGCTCATCGTGCTCATGTGGCGGCCCGAGGCGCTCGCGGGGC
CGAGTTTCCAGCTGAGCTTCGCCGCGGTGACCGCAATCGTGGCGCTCCACGAAAGTCCGGCGATGCAGGCGTTTCTCGCA
CGCCGCGACGAATCCTGGGCCTTCCGGCTGGGGCGCGGCATCGCGGGCCTGCTTGCGACGGGCCTGGTCGTCGAAGTCGC
GCTCACGCCGATCGCGCTGTTCCATTTCCACAAGGCGGGCCTTTATGGCGCACTCGCCAATGTCATCGCGATCCCGCTCA
CGACCTTTGTCGTCATGCCCGCCGAGGCGCTCGCGCTGCTGTTCGACAGCGTCGGGCTCGGCGCGCCCTTCTGGTGGGTC
GCCGAACAGGCGCTGCGGCTGCTGATCGCGCTCGCGCACAGCGTCGCAGGCGCGCCCGGCGCGGTGACGACGCTGCCCAG
CTTTCCGCCGTGGGGCTTTGGCTTGACGCTTTTCGGCGGGCTCTGGATCCTGCTCTGGCAAACACGCTGGCGCCGCTGGG
GGATGATCCCGCTCGCGGCGGGCGCTGCCGTGCTGCTGGCGCAGCCGCGCCCCGACCTGCTCGTCACCGGCGACGGGCGG
CACATCGCTGTGCCCCTGCCCGACGGCACCTATGCGCTGCTCCGCGATCGCGCGGGCGATTATGTCCGCGACAGCATGGC
CGAAGCGGCAGGAATCGACGCCCCGCTGGGCACGCTCGCCGATCTCGATCATGTCGAGTGCAACCGCGATTTCTGCCGCT
GGGTCCAAGGTGCAGGCGCGGCGCGGCGCGTCATTCTGGCGTCGCGCGGGCGCGACCGGATCGAGGGGGCGGATATGGCC
GCGGCGTGCGCCGCCGCCGATGTCGTGATCAGCGACCGCTGGCTGCCGCGCGAATGCGCCGGCCGCTGGCTCACGATCGA
GCGCGATAGCCTGGCCGAAACCGGCGGGCTCGCGCTCTATCTTGGCGAACGGCCCAAAGCCGTCGCCACGCTAAAGTCCG
GTGCCGAGCATCCGTGGCGTCGCCCGCAGCAGGTCAGTGGTAACGACGAAGCAGTCCCGACAGACGCCCCTGGACGATGA

Upstream 100 bases:

>100_bases
GGGCGTGGCTGTTGCCACTCTGGTCGGATTTTCGGTTGCCACCGCGGCCTCTTTCACTCACTTTGCCGCCCGGTCGGGCG
GGATCGGGGGTGCCCCTAGC

Downstream 100 bases:

>100_bases
CGCGCTCGGCCGGGTAGCGTTGCGGTTCATAGGCGCTGTTTGCAGGGTCGAGCCGGATCATCTTGCCTTCGCGCCGAAAG
AATTTGAGCGTCGCATCCTG

Product: ComEC/Rec2-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 719; Mature: 718

Protein sequence:

>719_residues
MATSPLQTPIAPDRVGRWTRLAAALEARLEAERERIGLWLPVALGAGIAAWLALPAKAHWIGLLLLLAAGVLGGLLIGWG
TRTGRSLAVGCGVMAVGMLLIWGRALWVAAPVLAQPVVTQFSAIVERVEPRPARGQVRILARPSARADLPPRIRLTLRTE
QAGDLVAGEAIGVRARLMPPPTASLPGGYDFAQRAWFDGIGAVGTVLGGVVRAPGRGSAAPPLRARLSAHIHRQVDGSAG
GIAAALVTGDRGAISEADEEAMRRSGLAHLLSISGLHVTAVVGFAMLLTMRLLALSPRLALAGLVLPLAAAAAALAGGGY
TLLAGAEVPTLRSFIAALLVLIAFLMGREALTLRLVAAGALIVLMWRPEALAGPSFQLSFAAVTAIVALHESPAMQAFLA
RRDESWAFRLGRGIAGLLATGLVVEVALTPIALFHFHKAGLYGALANVIAIPLTTFVVMPAEALALLFDSVGLGAPFWWV
AEQALRLLIALAHSVAGAPGAVTTLPSFPPWGFGLTLFGGLWILLWQTRWRRWGMIPLAAGAAVLLAQPRPDLLVTGDGR
HIAVPLPDGTYALLRDRAGDYVRDSMAEAAGIDAPLGTLADLDHVECNRDFCRWVQGAGAARRVILASRGRDRIEGADMA
AACAAADVVISDRWLPRECAGRWLTIERDSLAETGGLALYLGERPKAVATLKSGAEHPWRRPQQVSGNDEAVPTDAPGR

Sequences:

>Translated_719_residues
MATSPLQTPIAPDRVGRWTRLAAALEARLEAERERIGLWLPVALGAGIAAWLALPAKAHWIGLLLLLAAGVLGGLLIGWG
TRTGRSLAVGCGVMAVGMLLIWGRALWVAAPVLAQPVVTQFSAIVERVEPRPARGQVRILARPSARADLPPRIRLTLRTE
QAGDLVAGEAIGVRARLMPPPTASLPGGYDFAQRAWFDGIGAVGTVLGGVVRAPGRGSAAPPLRARLSAHIHRQVDGSAG
GIAAALVTGDRGAISEADEEAMRRSGLAHLLSISGLHVTAVVGFAMLLTMRLLALSPRLALAGLVLPLAAAAAALAGGGY
TLLAGAEVPTLRSFIAALLVLIAFLMGREALTLRLVAAGALIVLMWRPEALAGPSFQLSFAAVTAIVALHESPAMQAFLA
RRDESWAFRLGRGIAGLLATGLVVEVALTPIALFHFHKAGLYGALANVIAIPLTTFVVMPAEALALLFDSVGLGAPFWWV
AEQALRLLIALAHSVAGAPGAVTTLPSFPPWGFGLTLFGGLWILLWQTRWRRWGMIPLAAGAAVLLAQPRPDLLVTGDGR
HIAVPLPDGTYALLRDRAGDYVRDSMAEAAGIDAPLGTLADLDHVECNRDFCRWVQGAGAARRVILASRGRDRIEGADMA
AACAAADVVISDRWLPRECAGRWLTIERDSLAETGGLALYLGERPKAVATLKSGAEHPWRRPQQVSGNDEAVPTDAPGR
>Mature_718_residues
ATSPLQTPIAPDRVGRWTRLAAALEARLEAERERIGLWLPVALGAGIAAWLALPAKAHWIGLLLLLAAGVLGGLLIGWGT
RTGRSLAVGCGVMAVGMLLIWGRALWVAAPVLAQPVVTQFSAIVERVEPRPARGQVRILARPSARADLPPRIRLTLRTEQ
AGDLVAGEAIGVRARLMPPPTASLPGGYDFAQRAWFDGIGAVGTVLGGVVRAPGRGSAAPPLRARLSAHIHRQVDGSAGG
IAAALVTGDRGAISEADEEAMRRSGLAHLLSISGLHVTAVVGFAMLLTMRLLALSPRLALAGLVLPLAAAAAALAGGGYT
LLAGAEVPTLRSFIAALLVLIAFLMGREALTLRLVAAGALIVLMWRPEALAGPSFQLSFAAVTAIVALHESPAMQAFLAR
RDESWAFRLGRGIAGLLATGLVVEVALTPIALFHFHKAGLYGALANVIAIPLTTFVVMPAEALALLFDSVGLGAPFWWVA
EQALRLLIALAHSVAGAPGAVTTLPSFPPWGFGLTLFGGLWILLWQTRWRRWGMIPLAAGAAVLLAQPRPDLLVTGDGRH
IAVPLPDGTYALLRDRAGDYVRDSMAEAAGIDAPLGTLADLDHVECNRDFCRWVQGAGAARRVILASRGRDRIEGADMAA
ACAAADVVISDRWLPRECAGRWLTIERDSLAETGGLALYLGERPKAVATLKSGAEHPWRRPQQVSGNDEAVPTDAPGR

Specific function: Might contribute to transformation as a member of a membrane-bound pore complex at the base of the transformasome. It could directly interact with transforming DNA during translocation indirectly by participating in the assembly of the pore [H]

COG id: COG0658

COG function: function code R; Predicted membrane metal-binding protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR004477
- InterPro:   IPR004797 [H]

Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]

EC number: NA

Molecular weight: Translated: 75502; Mature: 75371

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATSPLQTPIAPDRVGRWTRLAAALEARLEAERERIGLWLPVALGAGIAAWLALPAKAHW
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHCCCHHHH
IGLLLLLAAGVLGGLLIGWGTRTGRSLAVGCGVMAVGMLLIWGRALWVAAPVLAQPVVTQ
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSAIVERVEPRPARGQVRILARPSARADLPPRIRLTLRTEQAGDLVAGEAIGVRARLMPP
HHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCEEECCCCCEEEEECCC
PTASLPGGYDFAQRAWFDGIGAVGTVLGGVVRAPGRGSAAPPLRARLSAHIHRQVDGSAG
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
GIAAALVTGDRGAISEADEEAMRRSGLAHLLSISGLHVTAVVGFAMLLTMRLLALSPRLA
CEEEEEEECCCCCCCHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHH
LAGLVLPLAAAAAALAGGGYTLLAGAEVPTLRSFIAALLVLIAFLMGREALTLRLVAAGA
HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHEECCE
LIVLMWRPEALAGPSFQLSFAAVTAIVALHESPAMQAFLARRDESWAFRLGRGIAGLLAT
EEEEEECCHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
GLVVEVALTPIALFHFHKAGLYGALANVIAIPLTTFVVMPAEALALLFDSVGLGAPFWWV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
AEQALRLLIALAHSVAGAPGAVTTLPSFPPWGFGLTLFGGLWILLWQTRWRRWGMIPLAA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECC
GAAVLLAQPRPDLLVTGDGRHIAVPLPDGTYALLRDRAGDYVRDSMAEAAGIDAPLGTLA
CCEEEEECCCCCEEEECCCCEEEEECCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCHHHH
DLDHVECNRDFCRWVQGAGAARRVILASRGRDRIEGADMAAACAAADVVISDRWLPRECA
CCCHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHC
GRWLTIERDSLAETGGLALYLGERPKAVATLKSGAEHPWRRPQQVSGNDEAVPTDAPGR
CCEEEEECHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ATSPLQTPIAPDRVGRWTRLAAALEARLEAERERIGLWLPVALGAGIAAWLALPAKAHW
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHCCCHHHH
IGLLLLLAAGVLGGLLIGWGTRTGRSLAVGCGVMAVGMLLIWGRALWVAAPVLAQPVVTQ
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSAIVERVEPRPARGQVRILARPSARADLPPRIRLTLRTEQAGDLVAGEAIGVRARLMPP
HHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCEEECCCCCEEEEECCC
PTASLPGGYDFAQRAWFDGIGAVGTVLGGVVRAPGRGSAAPPLRARLSAHIHRQVDGSAG
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
GIAAALVTGDRGAISEADEEAMRRSGLAHLLSISGLHVTAVVGFAMLLTMRLLALSPRLA
CEEEEEEECCCCCCCHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHH
LAGLVLPLAAAAAALAGGGYTLLAGAEVPTLRSFIAALLVLIAFLMGREALTLRLVAAGA
HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHEECCE
LIVLMWRPEALAGPSFQLSFAAVTAIVALHESPAMQAFLARRDESWAFRLGRGIAGLLAT
EEEEEECCHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
GLVVEVALTPIALFHFHKAGLYGALANVIAIPLTTFVVMPAEALALLFDSVGLGAPFWWV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
AEQALRLLIALAHSVAGAPGAVTTLPSFPPWGFGLTLFGGLWILLWQTRWRRWGMIPLAA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECC
GAAVLLAQPRPDLLVTGDGRHIAVPLPDGTYALLRDRAGDYVRDSMAEAAGIDAPLGTLA
CCEEEEECCCCCEEEECCCCEEEEECCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCHHHH
DLDHVECNRDFCRWVQGAGAARRVILASRGRDRIEGADMAAACAAADVVISDRWLPRECA
CCCHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHC
GRWLTIERDSLAETGGLALYLGERPKAVATLKSGAEHPWRRPQQVSGNDEAVPTDAPGR
CCEEEEECHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8063112; 7542800 [H]