Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486328

Identifier: 103486328

GI number: 103486328

Start: 843674

End: 844957

Strand: Reverse

Name: 103486328

Synonym: Sala_0838

Alternate gene names: NA

Gene position: 844957-843674 (Counterclockwise)

Preceding gene: 103486334

Following gene: 103486327

Centisome position: 25.26

GC content: 68.69

Gene sequence:

>1284_bases
TTGGCCCGCAAGTTTCTCTACCTCGTCGCCGCGATCATCCTCCTCATCCTCGCGATGGGGATCGTGTACCAGCTCTTCCC
CGGCTGGCTCGCGCGCACCGCCTTCGTCCCCAGCAGCGAGTTCGAGCCGCAGGCCGCGGTCGCCCCGAACGCCTATGACG
ATCCCGCAATGTGGTTCGCGCGGCCGGGGATGGAGAAAAATCCCGCGGCCTGGCGCCCCGCCGCCGACGGCAGCGAAACG
CCGGGCGACGCGCCCGGAAACAAGGCGGCCGATCCGCTGATCGCGCGCGCCAAGGCCGCCGAGACCCCCGCCGAACCCCC
CTTCCCCAGGGGCGACGCCGCGGTCTTTTTCGTCCATCCGACCAGCTATTACAGCCGGTCGAGCTGGAACGCCCCGCTCA
GCGACCGCGATTCGGACCACCGCGCCAATCTGTTCGTGCAGGGCATGGCGAGCGCCTTTGCCGACGCGGGCGAAATCTGG
GCGCCGCGCTATCGCCAGGCGACGCTCGGCGCCTTTCTCGCGACCGACCGCGTCACCGCGGGCAAGGCGATCGATTCGGC
CTATCGCGATGTCGAGGAAGCGTTCGACGCCTTCCTCGCCGCGCAGCCGAAGGACAAGCCGATCATCCTCGCGGGGCACA
GCCAGGGGGCGCTCCACCTGACCACCCTGCTCCGCACGAAGATCGCGGGAACGCCGCTCGCAAGGCGCATCGTCGCCGCG
TACATCATCGGCTGGCCGGTCAGCCTCGACACCGACATCGCCGCGCTCGGCCTCCCCGCGTGCCAGACCCCCGATCAAAA
GGGCTGTATCGTCAGCTGGGTCAGCTTCGCCGATCCCGCCGACCCCGCAATGGTCACCGACGCCTATGACGGGACGATCG
GCTTCGACGGCCGCCCGCGTGCGAATACACGGATGCTCTGCACCAATCCGCTCACCGGCATCCCCGACACCGCCGCGCCG
CCCGAAGCCAATCTCGGCACGCTGAAACCGACCGAAGGGTTCAAGTCGGGATCGCTGATCGCGGGCCGCATCGGCGCGAC
CTGCGACGACACGCGCGGCTTGCTGATGATCGGCGACGCCGATGTCGCCAAAAATTACGTCGTCGCGGGCTATGTGCTGC
CCGGCAATAATTATCATGTCTATGACATCACCCTGTTCTGGGCCAATGTCCGCGCCGACGCGCTGCGCCGCCTCGCGGCC
TATGAAGGCAAGCCGTCGCCGGTGCCGCCCGCCGCGGCGCCGTTGCCTGCACCTTCACCCGCATCTGCCGACGCCGCGAC
CTGA

Upstream 100 bases:

>100_bases
AAATCGTCATGCTGAAACAGATTCGGGGTGACGAGATATTTGAAGGGCCTGTCTGGACCGGCTAGAGACCCGCAAATCTC
CCCCTCCCATGGAGCCCCCC

Downstream 100 bases:

>100_bases
GCCTGCCGCGCCGCGCAAAGCTGGCTTTCGCGCGGGCAAAGCTTCTATCCCTTCCCCCGTCCCCGCAAAATCGTTAGGGC
GCGCGCATGATCCTCGTCAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MARKFLYLVAAIILLILAMGIVYQLFPGWLARTAFVPSSEFEPQAAVAPNAYDDPAMWFARPGMEKNPAAWRPAADGSET
PGDAPGNKAADPLIARAKAAETPAEPPFPRGDAAVFFVHPTSYYSRSSWNAPLSDRDSDHRANLFVQGMASAFADAGEIW
APRYRQATLGAFLATDRVTAGKAIDSAYRDVEEAFDAFLAAQPKDKPIILAGHSQGALHLTTLLRTKIAGTPLARRIVAA
YIIGWPVSLDTDIAALGLPACQTPDQKGCIVSWVSFADPADPAMVTDAYDGTIGFDGRPRANTRMLCTNPLTGIPDTAAP
PEANLGTLKPTEGFKSGSLIAGRIGATCDDTRGLLMIGDADVAKNYVVAGYVLPGNNYHVYDITLFWANVRADALRRLAA
YEGKPSPVPPAAAPLPAPSPASADAAT

Sequences:

>Translated_427_residues
MARKFLYLVAAIILLILAMGIVYQLFPGWLARTAFVPSSEFEPQAAVAPNAYDDPAMWFARPGMEKNPAAWRPAADGSET
PGDAPGNKAADPLIARAKAAETPAEPPFPRGDAAVFFVHPTSYYSRSSWNAPLSDRDSDHRANLFVQGMASAFADAGEIW
APRYRQATLGAFLATDRVTAGKAIDSAYRDVEEAFDAFLAAQPKDKPIILAGHSQGALHLTTLLRTKIAGTPLARRIVAA
YIIGWPVSLDTDIAALGLPACQTPDQKGCIVSWVSFADPADPAMVTDAYDGTIGFDGRPRANTRMLCTNPLTGIPDTAAP
PEANLGTLKPTEGFKSGSLIAGRIGATCDDTRGLLMIGDADVAKNYVVAGYVLPGNNYHVYDITLFWANVRADALRRLAA
YEGKPSPVPPAAAPLPAPSPASADAAT
>Mature_426_residues
ARKFLYLVAAIILLILAMGIVYQLFPGWLARTAFVPSSEFEPQAAVAPNAYDDPAMWFARPGMEKNPAAWRPAADGSETP
GDAPGNKAADPLIARAKAAETPAEPPFPRGDAAVFFVHPTSYYSRSSWNAPLSDRDSDHRANLFVQGMASAFADAGEIWA
PRYRQATLGAFLATDRVTAGKAIDSAYRDVEEAFDAFLAAQPKDKPIILAGHSQGALHLTTLLRTKIAGTPLARRIVAAY
IIGWPVSLDTDIAALGLPACQTPDQKGCIVSWVSFADPADPAMVTDAYDGTIGFDGRPRANTRMLCTNPLTGIPDTAAPP
EANLGTLKPTEGFKSGSLIAGRIGATCDDTRGLLMIGDADVAKNYVVAGYVLPGNNYHVYDITLFWANVRADALRRLAAY
EGKPSPVPPAAAPLPAPSPASADAAT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45238; Mature: 45106

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: PS00300 SRP54

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKFLYLVAAIILLILAMGIVYQLFPGWLARTAFVPSSEFEPQAAVAPNAYDDPAMWFA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEE
RPGMEKNPAAWRPAADGSETPGDAPGNKAADPLIARAKAAETPAEPPFPRGDAAVFFVHP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEC
TSYYSRSSWNAPLSDRDSDHRANLFVQGMASAFADAGEIWAPRYRQATLGAFLATDRVTA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHCCCHH
GKAIDSAYRDVEEAFDAFLAAQPKDKPIILAGHSQGALHLTTLLRTKIAGTPLARRIVAA
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHH
YIIGWPVSLDTDIAALGLPACQTPDQKGCIVSWVSFADPADPAMVTDAYDGTIGFDGRPR
HHHCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCEEEECCCCEECCCCCCC
ANTRMLCTNPLTGIPDTAAPPEANLGTLKPTEGFKSGSLIAGRIGATCDDTRGLLMIGDA
CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCC
DVAKNYVVAGYVLPGNNYHVYDITLFWANVRADALRRLAAYEGKPSPVPPAAAPLPAPSP
HHHCCEEEEEEEECCCCEEEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
ASADAAT
CCCCCCC
>Mature Secondary Structure 
ARKFLYLVAAIILLILAMGIVYQLFPGWLARTAFVPSSEFEPQAAVAPNAYDDPAMWFA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEE
RPGMEKNPAAWRPAADGSETPGDAPGNKAADPLIARAKAAETPAEPPFPRGDAAVFFVHP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEC
TSYYSRSSWNAPLSDRDSDHRANLFVQGMASAFADAGEIWAPRYRQATLGAFLATDRVTA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHCCCHH
GKAIDSAYRDVEEAFDAFLAAQPKDKPIILAGHSQGALHLTTLLRTKIAGTPLARRIVAA
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHH
YIIGWPVSLDTDIAALGLPACQTPDQKGCIVSWVSFADPADPAMVTDAYDGTIGFDGRPR
HHHCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCEEEECCCCEECCCCCCC
ANTRMLCTNPLTGIPDTAAPPEANLGTLKPTEGFKSGSLIAGRIGATCDDTRGLLMIGDA
CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCC
DVAKNYVVAGYVLPGNNYHVYDITLFWANVRADALRRLAAYEGKPSPVPPAAAPLPAPSP
HHHCCEEEEEEEECCCCEEEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
ASADAAT
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA