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The map label for this gene is sodC2 [H]

Identifier: 103486308

GI number: 103486308

Start: 821854

End: 822534

Strand: Reverse

Name: sodC2 [H]

Synonym: Sala_0817

Alternate gene names: 103486308

Gene position: 822534-821854 (Counterclockwise)

Preceding gene: 103486311

Following gene: 103486306

Centisome position: 24.59

GC content: 68.72

Gene sequence:

>681_bases
ATGCCCTTGGAACCTGCTCCAAAAAGCGGCATCGTGCCTGGGGATCGAAACGCGCCGCTACGGCGTTCTGATCAGGACGG
GATAGCAGGGAGCAGCCACATGACGATCGGTTCGCAGCACAAACAGTTTCTCGCCTACGGTGGCGCCCTCGCGTGGGCGC
TGCTCCTCGCGGGCTGCGCGGGGATGGGCGGCAAGGCGCCGACGACGACGCTGCCGCCGCCCGACGCCCACGCGCAGCTT
TACGATGCCAGCGGCGCCGACCGCGGTCGCGCCGACATTTATCGCGACGCGAGCGGGCTGCGCATCGAGCTGGTCGCGCG
CGGTTTCGGTCCCGGCACCTATGGCATGCACGTGCATACGGTTGGGCAATGCACACCGCCCGACTTCGCCAGCGCAGGCG
GACACTGGAACCCGACCGGGGTTCAGCACGGCCGTGACAATCCGATGGGTGCGCATCATGGCGACCTGCCCAATCTGGTC
GTCGAGCCCGGCCAGATCGGTCGCGCGACGCTGCGGATGGTCGGTTCGCGCTTCGACGGCGAGAGCGGGCTGCTCGACGC
CGACGGCGCGGCCTTTGTCATTCACGCCGGTCCCGACGATATGAAGACCGATCCCAGCGGCAACAGCGGTGGGCGTGTTG
CGTGCGGCGTGATCGTCGCGGGCGGTCCCGTCGGCGGCTGA

Upstream 100 bases:

>100_bases
GAAATGGCTTCAATCTCCGATGCTACCCGCCGCACCCGCCAAGGTCCGATATCTTCGCCATTTCGACGCCTCGAAGGGGT
AATTAATGGGTCCTGACCCT

Downstream 100 bases:

>100_bases
CCGGTCAGGCGCCGCCGCGCGCCGCGGCCGCACGCTGCACGAGCGTCGCCTCGGCCTCCGGCAGCGCGCGATAGGCATAG
AACAGCAGCGCGACCGCGAC

Product: superoxide dismutase, copper/zinc binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MPLEPAPKSGIVPGDRNAPLRRSDQDGIAGSSHMTIGSQHKQFLAYGGALAWALLLAGCAGMGGKAPTTTLPPPDAHAQL
YDASGADRGRADIYRDASGLRIELVARGFGPGTYGMHVHTVGQCTPPDFASAGGHWNPTGVQHGRDNPMGAHHGDLPNLV
VEPGQIGRATLRMVGSRFDGESGLLDADGAAFVIHAGPDDMKTDPSGNSGGRVACGVIVAGGPVGG

Sequences:

>Translated_226_residues
MPLEPAPKSGIVPGDRNAPLRRSDQDGIAGSSHMTIGSQHKQFLAYGGALAWALLLAGCAGMGGKAPTTTLPPPDAHAQL
YDASGADRGRADIYRDASGLRIELVARGFGPGTYGMHVHTVGQCTPPDFASAGGHWNPTGVQHGRDNPMGAHHGDLPNLV
VEPGQIGRATLRMVGSRFDGESGLLDADGAAFVIHAGPDDMKTDPSGNSGGRVACGVIVAGGPVGG
>Mature_225_residues
PLEPAPKSGIVPGDRNAPLRRSDQDGIAGSSHMTIGSQHKQFLAYGGALAWALLLAGCAGMGGKAPTTTLPPPDAHAQLY
DASGADRGRADIYRDASGLRIELVARGFGPGTYGMHVHTVGQCTPPDFASAGGHWNPTGVQHGRDNPMGAHHGDLPNLVV
EPGQIGRATLRMVGSRFDGESGLLDADGAAFVIHAGPDDMKTDPSGNSGGRVACGVIVAGGPVGG

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4826665, Length=123, Percent_Identity=36.5853658536585, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1787934, Length=146, Percent_Identity=35.6164383561644, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22969; Mature: 22838

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLEPAPKSGIVPGDRNAPLRRSDQDGIAGSSHMTIGSQHKQFLAYGGALAWALLLAGCA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHC
GMGGKAPTTTLPPPDAHAQLYDASGADRGRADIYRDASGLRIELVARGFGPGTYGMHVHT
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHEEECCCCCEEEEEEECCCCCCCCEEEEE
VGQCTPPDFASAGGHWNPTGVQHGRDNPMGAHHGDLPNLVVEPGQIGRATLRMVGSRFDG
CCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHCCCCC
ESGLLDADGAAFVIHAGPDDMKTDPSGNSGGRVACGVIVAGGPVGG
CCCEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCC
>Mature Secondary Structure 
PLEPAPKSGIVPGDRNAPLRRSDQDGIAGSSHMTIGSQHKQFLAYGGALAWALLLAGCA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHC
GMGGKAPTTTLPPPDAHAQLYDASGADRGRADIYRDASGLRIELVARGFGPGTYGMHVHT
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHEEECCCCCEEEEEEECCCCCCCCEEEEE
VGQCTPPDFASAGGHWNPTGVQHGRDNPMGAHHGDLPNLVVEPGQIGRATLRMVGSRFDG
CCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHCCCCC
ESGLLDADGAAFVIHAGPDDMKTDPSGNSGGRVACGVIVAGGPVGG
CCCEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]