| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486222
Identifier: 103486222
GI number: 103486222
Start: 734514
End: 736103
Strand: Direct
Name: 103486222
Synonym: Sala_0729
Alternate gene names: NA
Gene position: 734514-736103 (Clockwise)
Preceding gene: 103486221
Following gene: 103486223
Centisome position: 21.96
GC content: 71.32
Gene sequence:
>1590_bases ATGAGGCTAATCGGGGCGAAGCGATGGAGGGCGGGTGGCGCCCCCGCATTCGTGCGGCTCGTGGCGGCCGTTCTGCTGTT CGGCGGCGGCTATGCCGTCGCGAACCGTTTCCAGCTGATCCACAGCGTCGCCTATCGCCTTGCCGCGGGCGATGTGCCCA GCGCCGCGACGGCCCTGCTTTTCCTTGCCTTTCAGGCGGCTGTCTTCCTGGCGGCGCTGGTGCTTTTTCCGCGGCGCTGG GCGGCGGTGCTGCTGGTGCTCGCGGGCGCCTCGATCCTCGTCAACACCGGTTATGCGCAGCTTGTCGCCGAGCTGCTCGA CGCGGGGTCGCTCGCATGGCTGTGGGCCGAAGCGCGGCAGGCGGGCAATGCCGCGGGCGAGTTCGGCGGCGAATTGCCTT GGGTCGCGGTACAGGTCGCGGCGGCGCTGGCGTTGTTCGTCGCCGCACGGCGGCTGGCGCGGCGCGCGGCGCACTGGCCG TGGGGCGGCGGCTGGGCGGCGGCGACGCTCGCGCTGCTCATCGTGCCGAGCATCGCCTATCGCCACGCCGCGCTGTGGCC CGAGGGCGCCGAGCGCAGCCTCTATGGGCTGGCTATCGACCTTGCGGGTGCGCCGCCGCCGCCGCCGCGCGGCGCGGTCG AGCTGGCGCCGCGCGCGCCGCCGGACGCGCCGCGGCATATCGTGTGGGTGATCGACGAGAGTGTCGCCGAAGCGCCTTTC CGGCGGCTGATCGCGCCGACGCTGGCGGACACGCCGCACCTCGACTTCGGGGTCGCGGCGGCGATGGGGCATTGCAGCGC GCCGGCGCAGGTCGCGCTGCGCTCGGGCATCGATGTGCGCCGCGTCGATACGGACACCGACCTGCGCCGCACGCCATCGA TCTGGGCCTATGCCAAGGCGGCGGGCTATCGCACGGTGATGATCGACGGGCAGACGACGGGCGCCCCGCAGAACCTCCTG CTGCCGCCCGAACGGGCGCTCATCGACGCCTATCGCGCGATGCCCGGCGGAATCGACACCGACCTGACGATGGCCGACGC GATCAATCAAGGCCTGAAAAGGGACGAAAGGACATTTACCTATGCCGTGCTGCGCGGGGTCCATTTCCAGTATCGCGATC ATTATCCCGCGGGCACCCTTCCGGCCGATGCTCCCGTCGCGCTGCAATATGCGACGGCGCTCCGATGGTCGAAGGCACGC TTTTTCTCGCGGCTGCTCGCCGGGGTCGACCGCGCGGGCGTCGCGATCGTCTATACGTCGGACCATGGGCAGAATCTGAC GCCCGGCGCGCTGCCGCATTGCAGCCGCGCGCCCGTCGCCGACGAGTTTCGCGTGCCGCTGCTCGCCTTTCTGCCGCCGC GGCTCGCCGCGCGCTACGGCGATGCGCCGCGCGCGGGCCATTCGGTGAGCCAGATTTTCCCGGCAACGCTGATCTGGATG GGATATGACGCGGCGGCGGTCACCGCGCGCTATGACCGCGACCTGACGCAGCCGACGGCGCGCTTCGTCTGGTTCGGGCG CACGGTGATCCCGACCGGCGGCGAGACGGCGATCGACGTCACCGCGGGCCCCCATTTCCCCGGACGTTGA
Upstream 100 bases:
>100_bases CGCGCCCGCTGCGTGACGTGTCTTGCATGGCCCGCACCCCGTGAGGGGAAGAGTCCATTTCTTCGGGATTTTTCAAGGAC TGCGCCCTAAGGCGGGGCGG
Downstream 100 bases:
>100_bases CCGTGCAGATCAGTGCGCGCGCGGGCGCGGCGGTCCGGCGATCAGCTTGTTGAGCGTCGCGAGGCGGCGGCGCGCTTCGG TCCAGTCGCGTTCGGGATGC
Product: sulfatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 529; Mature: 529
Protein sequence:
>529_residues MRLIGAKRWRAGGAPAFVRLVAAVLLFGGGYAVANRFQLIHSVAYRLAAGDVPSAATALLFLAFQAAVFLAALVLFPRRW AAVLLVLAGASILVNTGYAQLVAELLDAGSLAWLWAEARQAGNAAGEFGGELPWVAVQVAAALALFVAARRLARRAAHWP WGGGWAAATLALLIVPSIAYRHAALWPEGAERSLYGLAIDLAGAPPPPPRGAVELAPRAPPDAPRHIVWVIDESVAEAPF RRLIAPTLADTPHLDFGVAAAMGHCSAPAQVALRSGIDVRRVDTDTDLRRTPSIWAYAKAAGYRTVMIDGQTTGAPQNLL LPPERALIDAYRAMPGGIDTDLTMADAINQGLKRDERTFTYAVLRGVHFQYRDHYPAGTLPADAPVALQYATALRWSKAR FFSRLLAGVDRAGVAIVYTSDHGQNLTPGALPHCSRAPVADEFRVPLLAFLPPRLAARYGDAPRAGHSVSQIFPATLIWM GYDAAAVTARYDRDLTQPTARFVWFGRTVIPTGGETAIDVTAGPHFPGR
Sequences:
>Translated_529_residues MRLIGAKRWRAGGAPAFVRLVAAVLLFGGGYAVANRFQLIHSVAYRLAAGDVPSAATALLFLAFQAAVFLAALVLFPRRW AAVLLVLAGASILVNTGYAQLVAELLDAGSLAWLWAEARQAGNAAGEFGGELPWVAVQVAAALALFVAARRLARRAAHWP WGGGWAAATLALLIVPSIAYRHAALWPEGAERSLYGLAIDLAGAPPPPPRGAVELAPRAPPDAPRHIVWVIDESVAEAPF RRLIAPTLADTPHLDFGVAAAMGHCSAPAQVALRSGIDVRRVDTDTDLRRTPSIWAYAKAAGYRTVMIDGQTTGAPQNLL LPPERALIDAYRAMPGGIDTDLTMADAINQGLKRDERTFTYAVLRGVHFQYRDHYPAGTLPADAPVALQYATALRWSKAR FFSRLLAGVDRAGVAIVYTSDHGQNLTPGALPHCSRAPVADEFRVPLLAFLPPRLAARYGDAPRAGHSVSQIFPATLIWM GYDAAAVTARYDRDLTQPTARFVWFGRTVIPTGGETAIDVTAGPHFPGR >Mature_529_residues MRLIGAKRWRAGGAPAFVRLVAAVLLFGGGYAVANRFQLIHSVAYRLAAGDVPSAATALLFLAFQAAVFLAALVLFPRRW AAVLLVLAGASILVNTGYAQLVAELLDAGSLAWLWAEARQAGNAAGEFGGELPWVAVQVAAALALFVAARRLARRAAHWP WGGGWAAATLALLIVPSIAYRHAALWPEGAERSLYGLAIDLAGAPPPPPRGAVELAPRAPPDAPRHIVWVIDESVAEAPF RRLIAPTLADTPHLDFGVAAAMGHCSAPAQVALRSGIDVRRVDTDTDLRRTPSIWAYAKAAGYRTVMIDGQTTGAPQNLL LPPERALIDAYRAMPGGIDTDLTMADAINQGLKRDERTFTYAVLRGVHFQYRDHYPAGTLPADAPVALQYATALRWSKAR FFSRLLAGVDRAGVAIVYTSDHGQNLTPGALPHCSRAPVADEFRVPLLAFLPPRLAARYGDAPRAGHSVSQIFPATLIWM GYDAAAVTARYDRDLTQPTARFVWFGRTVIPTGGETAIDVTAGPHFPGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56531; Mature: 56531
Theoretical pI: Translated: 9.94; Mature: 9.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLIGAKRWRAGGAPAFVRLVAAVLLFGGGYAVANRFQLIHSVAYRLAAGDVPSAATALL CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH FLAFQAAVFLAALVLFPRRWAAVLLVLAGASILVNTGYAQLVAELLDAGSLAWLWAEARQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCHHHHHHHHHCCCCHHHHHHHHHH AGNAAGEFGGELPWVAVQVAAALALFVAARRLARRAAHWPWGGGWAAATLALLIVPSIAY CCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH RHAALWPEGAERSLYGLAIDLAGAPPPPPRGAVELAPRAPPDAPRHIVWVIDESVAEAPF HHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCCCCEEEEEECCHHHHHHH RRLIAPTLADTPHLDFGVAAAMGHCSAPAQVALRSGIDVRRVDTDTDLRRTPSIWAYAKA HHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCHHEEHHC AGYRTVMIDGQTTGAPQNLLLPPERALIDAYRAMPGGIDTDLTMADAINQGLKRDERTFT CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH YAVLRGVHFQYRDHYPAGTLPADAPVALQYATALRWSKARFFSRLLAGVDRAGVAIVYTS HHHHHCCHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC DHGQNLTPGALPHCSRAPVADEFRVPLLAFLPPRLAARYGDAPRAGHSVSQIFPATLIWM CCCCCCCCCCCCCCCCCCCCCHHCCCHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHEEE GYDAAAVTARYDRDLTQPTARFVWFGRTVIPTGGETAIDVTAGPHFPGR CCCHHHHHHHHCCCCCCHHHHEEEECCEEECCCCCEEEEEECCCCCCCC >Mature Secondary Structure MRLIGAKRWRAGGAPAFVRLVAAVLLFGGGYAVANRFQLIHSVAYRLAAGDVPSAATALL CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH FLAFQAAVFLAALVLFPRRWAAVLLVLAGASILVNTGYAQLVAELLDAGSLAWLWAEARQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCHHHHHHHHHCCCCHHHHHHHHHH AGNAAGEFGGELPWVAVQVAAALALFVAARRLARRAAHWPWGGGWAAATLALLIVPSIAY CCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH RHAALWPEGAERSLYGLAIDLAGAPPPPPRGAVELAPRAPPDAPRHIVWVIDESVAEAPF HHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCCCCEEEEEECCHHHHHHH RRLIAPTLADTPHLDFGVAAAMGHCSAPAQVALRSGIDVRRVDTDTDLRRTPSIWAYAKA HHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCHHEEHHC AGYRTVMIDGQTTGAPQNLLLPPERALIDAYRAMPGGIDTDLTMADAINQGLKRDERTFT CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH YAVLRGVHFQYRDHYPAGTLPADAPVALQYATALRWSKARFFSRLLAGVDRAGVAIVYTS HHHHHCCHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC DHGQNLTPGALPHCSRAPVADEFRVPLLAFLPPRLAARYGDAPRAGHSVSQIFPATLIWM CCCCCCCCCCCCCCCCCCCCCHHCCCHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHEEE GYDAAAVTARYDRDLTQPTARFVWFGRTVIPTGGETAIDVTAGPHFPGR CCCHHHHHHHHCCCCCCHHHHEEEECCEEECCCCCEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA