Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103486222

Identifier: 103486222

GI number: 103486222

Start: 734514

End: 736103

Strand: Direct

Name: 103486222

Synonym: Sala_0729

Alternate gene names: NA

Gene position: 734514-736103 (Clockwise)

Preceding gene: 103486221

Following gene: 103486223

Centisome position: 21.96

GC content: 71.32

Gene sequence:

>1590_bases
ATGAGGCTAATCGGGGCGAAGCGATGGAGGGCGGGTGGCGCCCCCGCATTCGTGCGGCTCGTGGCGGCCGTTCTGCTGTT
CGGCGGCGGCTATGCCGTCGCGAACCGTTTCCAGCTGATCCACAGCGTCGCCTATCGCCTTGCCGCGGGCGATGTGCCCA
GCGCCGCGACGGCCCTGCTTTTCCTTGCCTTTCAGGCGGCTGTCTTCCTGGCGGCGCTGGTGCTTTTTCCGCGGCGCTGG
GCGGCGGTGCTGCTGGTGCTCGCGGGCGCCTCGATCCTCGTCAACACCGGTTATGCGCAGCTTGTCGCCGAGCTGCTCGA
CGCGGGGTCGCTCGCATGGCTGTGGGCCGAAGCGCGGCAGGCGGGCAATGCCGCGGGCGAGTTCGGCGGCGAATTGCCTT
GGGTCGCGGTACAGGTCGCGGCGGCGCTGGCGTTGTTCGTCGCCGCACGGCGGCTGGCGCGGCGCGCGGCGCACTGGCCG
TGGGGCGGCGGCTGGGCGGCGGCGACGCTCGCGCTGCTCATCGTGCCGAGCATCGCCTATCGCCACGCCGCGCTGTGGCC
CGAGGGCGCCGAGCGCAGCCTCTATGGGCTGGCTATCGACCTTGCGGGTGCGCCGCCGCCGCCGCCGCGCGGCGCGGTCG
AGCTGGCGCCGCGCGCGCCGCCGGACGCGCCGCGGCATATCGTGTGGGTGATCGACGAGAGTGTCGCCGAAGCGCCTTTC
CGGCGGCTGATCGCGCCGACGCTGGCGGACACGCCGCACCTCGACTTCGGGGTCGCGGCGGCGATGGGGCATTGCAGCGC
GCCGGCGCAGGTCGCGCTGCGCTCGGGCATCGATGTGCGCCGCGTCGATACGGACACCGACCTGCGCCGCACGCCATCGA
TCTGGGCCTATGCCAAGGCGGCGGGCTATCGCACGGTGATGATCGACGGGCAGACGACGGGCGCCCCGCAGAACCTCCTG
CTGCCGCCCGAACGGGCGCTCATCGACGCCTATCGCGCGATGCCCGGCGGAATCGACACCGACCTGACGATGGCCGACGC
GATCAATCAAGGCCTGAAAAGGGACGAAAGGACATTTACCTATGCCGTGCTGCGCGGGGTCCATTTCCAGTATCGCGATC
ATTATCCCGCGGGCACCCTTCCGGCCGATGCTCCCGTCGCGCTGCAATATGCGACGGCGCTCCGATGGTCGAAGGCACGC
TTTTTCTCGCGGCTGCTCGCCGGGGTCGACCGCGCGGGCGTCGCGATCGTCTATACGTCGGACCATGGGCAGAATCTGAC
GCCCGGCGCGCTGCCGCATTGCAGCCGCGCGCCCGTCGCCGACGAGTTTCGCGTGCCGCTGCTCGCCTTTCTGCCGCCGC
GGCTCGCCGCGCGCTACGGCGATGCGCCGCGCGCGGGCCATTCGGTGAGCCAGATTTTCCCGGCAACGCTGATCTGGATG
GGATATGACGCGGCGGCGGTCACCGCGCGCTATGACCGCGACCTGACGCAGCCGACGGCGCGCTTCGTCTGGTTCGGGCG
CACGGTGATCCCGACCGGCGGCGAGACGGCGATCGACGTCACCGCGGGCCCCCATTTCCCCGGACGTTGA

Upstream 100 bases:

>100_bases
CGCGCCCGCTGCGTGACGTGTCTTGCATGGCCCGCACCCCGTGAGGGGAAGAGTCCATTTCTTCGGGATTTTTCAAGGAC
TGCGCCCTAAGGCGGGGCGG

Downstream 100 bases:

>100_bases
CCGTGCAGATCAGTGCGCGCGCGGGCGCGGCGGTCCGGCGATCAGCTTGTTGAGCGTCGCGAGGCGGCGGCGCGCTTCGG
TCCAGTCGCGTTCGGGATGC

Product: sulfatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MRLIGAKRWRAGGAPAFVRLVAAVLLFGGGYAVANRFQLIHSVAYRLAAGDVPSAATALLFLAFQAAVFLAALVLFPRRW
AAVLLVLAGASILVNTGYAQLVAELLDAGSLAWLWAEARQAGNAAGEFGGELPWVAVQVAAALALFVAARRLARRAAHWP
WGGGWAAATLALLIVPSIAYRHAALWPEGAERSLYGLAIDLAGAPPPPPRGAVELAPRAPPDAPRHIVWVIDESVAEAPF
RRLIAPTLADTPHLDFGVAAAMGHCSAPAQVALRSGIDVRRVDTDTDLRRTPSIWAYAKAAGYRTVMIDGQTTGAPQNLL
LPPERALIDAYRAMPGGIDTDLTMADAINQGLKRDERTFTYAVLRGVHFQYRDHYPAGTLPADAPVALQYATALRWSKAR
FFSRLLAGVDRAGVAIVYTSDHGQNLTPGALPHCSRAPVADEFRVPLLAFLPPRLAARYGDAPRAGHSVSQIFPATLIWM
GYDAAAVTARYDRDLTQPTARFVWFGRTVIPTGGETAIDVTAGPHFPGR

Sequences:

>Translated_529_residues
MRLIGAKRWRAGGAPAFVRLVAAVLLFGGGYAVANRFQLIHSVAYRLAAGDVPSAATALLFLAFQAAVFLAALVLFPRRW
AAVLLVLAGASILVNTGYAQLVAELLDAGSLAWLWAEARQAGNAAGEFGGELPWVAVQVAAALALFVAARRLARRAAHWP
WGGGWAAATLALLIVPSIAYRHAALWPEGAERSLYGLAIDLAGAPPPPPRGAVELAPRAPPDAPRHIVWVIDESVAEAPF
RRLIAPTLADTPHLDFGVAAAMGHCSAPAQVALRSGIDVRRVDTDTDLRRTPSIWAYAKAAGYRTVMIDGQTTGAPQNLL
LPPERALIDAYRAMPGGIDTDLTMADAINQGLKRDERTFTYAVLRGVHFQYRDHYPAGTLPADAPVALQYATALRWSKAR
FFSRLLAGVDRAGVAIVYTSDHGQNLTPGALPHCSRAPVADEFRVPLLAFLPPRLAARYGDAPRAGHSVSQIFPATLIWM
GYDAAAVTARYDRDLTQPTARFVWFGRTVIPTGGETAIDVTAGPHFPGR
>Mature_529_residues
MRLIGAKRWRAGGAPAFVRLVAAVLLFGGGYAVANRFQLIHSVAYRLAAGDVPSAATALLFLAFQAAVFLAALVLFPRRW
AAVLLVLAGASILVNTGYAQLVAELLDAGSLAWLWAEARQAGNAAGEFGGELPWVAVQVAAALALFVAARRLARRAAHWP
WGGGWAAATLALLIVPSIAYRHAALWPEGAERSLYGLAIDLAGAPPPPPRGAVELAPRAPPDAPRHIVWVIDESVAEAPF
RRLIAPTLADTPHLDFGVAAAMGHCSAPAQVALRSGIDVRRVDTDTDLRRTPSIWAYAKAAGYRTVMIDGQTTGAPQNLL
LPPERALIDAYRAMPGGIDTDLTMADAINQGLKRDERTFTYAVLRGVHFQYRDHYPAGTLPADAPVALQYATALRWSKAR
FFSRLLAGVDRAGVAIVYTSDHGQNLTPGALPHCSRAPVADEFRVPLLAFLPPRLAARYGDAPRAGHSVSQIFPATLIWM
GYDAAAVTARYDRDLTQPTARFVWFGRTVIPTGGETAIDVTAGPHFPGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56531; Mature: 56531

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLIGAKRWRAGGAPAFVRLVAAVLLFGGGYAVANRFQLIHSVAYRLAAGDVPSAATALL
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
FLAFQAAVFLAALVLFPRRWAAVLLVLAGASILVNTGYAQLVAELLDAGSLAWLWAEARQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCHHHHHHHHHCCCCHHHHHHHHHH
AGNAAGEFGGELPWVAVQVAAALALFVAARRLARRAAHWPWGGGWAAATLALLIVPSIAY
CCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
RHAALWPEGAERSLYGLAIDLAGAPPPPPRGAVELAPRAPPDAPRHIVWVIDESVAEAPF
HHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCCCCEEEEEECCHHHHHHH
RRLIAPTLADTPHLDFGVAAAMGHCSAPAQVALRSGIDVRRVDTDTDLRRTPSIWAYAKA
HHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCHHEEHHC
AGYRTVMIDGQTTGAPQNLLLPPERALIDAYRAMPGGIDTDLTMADAINQGLKRDERTFT
CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
YAVLRGVHFQYRDHYPAGTLPADAPVALQYATALRWSKARFFSRLLAGVDRAGVAIVYTS
HHHHHCCHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
DHGQNLTPGALPHCSRAPVADEFRVPLLAFLPPRLAARYGDAPRAGHSVSQIFPATLIWM
CCCCCCCCCCCCCCCCCCCCCHHCCCHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHEEE
GYDAAAVTARYDRDLTQPTARFVWFGRTVIPTGGETAIDVTAGPHFPGR
CCCHHHHHHHHCCCCCCHHHHEEEECCEEECCCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MRLIGAKRWRAGGAPAFVRLVAAVLLFGGGYAVANRFQLIHSVAYRLAAGDVPSAATALL
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
FLAFQAAVFLAALVLFPRRWAAVLLVLAGASILVNTGYAQLVAELLDAGSLAWLWAEARQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCHHHHHHHHHCCCCHHHHHHHHHH
AGNAAGEFGGELPWVAVQVAAALALFVAARRLARRAAHWPWGGGWAAATLALLIVPSIAY
CCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
RHAALWPEGAERSLYGLAIDLAGAPPPPPRGAVELAPRAPPDAPRHIVWVIDESVAEAPF
HHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCCCCEEEEEECCHHHHHHH
RRLIAPTLADTPHLDFGVAAAMGHCSAPAQVALRSGIDVRRVDTDTDLRRTPSIWAYAKA
HHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCHHEEHHC
AGYRTVMIDGQTTGAPQNLLLPPERALIDAYRAMPGGIDTDLTMADAINQGLKRDERTFT
CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
YAVLRGVHFQYRDHYPAGTLPADAPVALQYATALRWSKARFFSRLLAGVDRAGVAIVYTS
HHHHHCCHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
DHGQNLTPGALPHCSRAPVADEFRVPLLAFLPPRLAARYGDAPRAGHSVSQIFPATLIWM
CCCCCCCCCCCCCCCCCCCCCHHCCCHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHEEE
GYDAAAVTARYDRDLTQPTARFVWFGRTVIPTGGETAIDVTAGPHFPGR
CCCHHHHHHHHCCCCCCHHHHEEEECCEEECCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA