| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486172
Identifier: 103486172
GI number: 103486172
Start: 686628
End: 688445
Strand: Reverse
Name: 103486172
Synonym: Sala_0679
Alternate gene names: NA
Gene position: 688445-686628 (Counterclockwise)
Preceding gene: 103486176
Following gene: 103486171
Centisome position: 20.58
GC content: 64.8
Gene sequence:
>1818_bases GTGTCGCACCTTCGCACCCTCGCTCGTCTGTCCACCGGCCTTGTCCTGCTTGCCACGGCGGGCTGTGCGTCCATGACCGG GCAGGGCGGCCCCGTGGCGAGCACGCCGCCCCCGGCGGCGGCGGTGCCGGCTGGCGCCGATCTTGCGCAATTCTTTGAAA ATTACGACGCCGCGCTGCTGTCGCTGGCGCCGCAGAGCAAGGCCTATCGCGGCATTCGCGACGCCGACTATGGCCGCTGG GACGACGTCAGCGACGAAGCCGCGGTCGCGCGCCACAAATTGCAGCAGGCCAGCGCCGCGGCAATGCGCGCGAGCTTCGA CCCCGCGACGCTGTCCGCCGAAGAAGCCCTGTCGTTCGAGCTGTTCAACGCCGCAGCGGCGCGCGCCGAACGGCTGTTCC CTTACCGCAATCACGACTATATCTTCGACCAGATGAACGGCGCGCAAAGCCAGCTGCCCGCCTTTCTCATCAACATCCAT CGCGTCGCCAACGTCGCCGAAGCCGAAGCCTATGTGTCGCGCATCCGCGGGCTCGGTCCGCTGCTCGATGCGCTGTCGGC GCAGTCGGCCGAACGTGCCGCGCGGGGAATCCAGCCGCCGAAATGGGTCTATGCCTATCTGATTTCCGACATCGGCAATC TGCTCGGCCCCGACAATGCGGTGATCGAGGACATTACGGCGAAGGTCGGCAAGCTCGGCGTCAGCGACGCCGAAAAGGCG CGGCTGGTCGCCGCGGCCAAGGCGGCCTGGACCGAAAGCGCCGGTCCGGCCTATGCCCGCCTGCTCGCCGAAATGAAGCG GCAGCAGGCGGTGGCGCCGACCGCCGACGGCATCTGGCGCCTGCCCGATGGCAAGGCCTATTATGAAGCGCTGCTCGCCA ATTACACGACGACCGACATGACCGCTTCGCAGATCCACGAACTCGGCCTCGCCGAAGTCGCGCGGATCCATGGCGAGATG CGGGCGATCATGACGAAGGTCGGTTTCAAGGGCAGTTTGCAGGAGTTTTTCGTCCATCTGCGCACAAGCCCGCAATTTTA TCACACGACGCGCGAAGCCTATCTGGCCGATGTCGACAAATATGTGAAAGCGATGGAGGCACGGCTCCCCGCCTTTTTCA ACACGCTGCCGAAGGCGCCGCTGGTGGTCAAACCCGTCGAGGCGTTCCGCGAAAAGTCGGCGGGCAAGGCCTTTTACCAG TCGCCCTCGCCCGACGGATCGCGGCCGGGCACCTATTATGTCAACCTCTATGACCTCAACGACATGTCGAAGACCGAGCT CGAGGCGCTCGCCTATCATGAGGGCGTGCCGGGCCATCACCTCCAGCGCGCGGTGCAGACCGAGCTCACCGGCCTGCCAC CCTTCCGCCGCTTTGGCGGCGTCACCGCCTATACCGAGGGGTGGGGGCTGTATTCGGAGGAACTCGCCAAGGACATGGGC TTCTATACCGATCCGTACAGCGATTTCGGCCGGCTGGGCATGGAGCTGTGGCGCGCGTGCCGCCTCGTCGTCGACACCGG CATCCACGACAAGCGCTGGAGCCGCGAACAGGCGATTCAGTATCTGAAGGACAATACCCCCAATCCGCAAGGCGATATTG AAAAGGCGATCGAGCGTTATATCGTCTATCCGGGGCAGGCGACCGCCTACCTCATCGGCAAGCTCAAGATCATGGAGCTG CGCGGGCGCGCGCAGGCGGCGCTTGGCGAACGCTTCGATTTCCGCCGCTTCCACGATGTCGTGCTGGAATCGGGGCCGGT GCCGCTCGATATCCTCGAACGGCGGGTCGATGCGTGGATCGCGGCTGAAAAAGGTTAA
Upstream 100 bases:
>100_bases GGCGTCGGTGAGCGAAGCGAAAAGCGACATGGCCCGCCATTGCGCGCCCGGCGGCGCTATGGCAAGCCCCCGCCATATCC GCAAAAACCGGGAGAAAATC
Downstream 100 bases:
>100_bases GGCGGTTGACGAATGCGCTTGACGCACACCCCGGAAAAGCAAATGATTTGATTCAGATAAGCAGGCGGCCGGGGAAAGGC CGTCGGGGGTCTGGGTCTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 605; Mature: 604
Protein sequence:
>605_residues MSHLRTLARLSTGLVLLATAGCASMTGQGGPVASTPPPAAAVPAGADLAQFFENYDAALLSLAPQSKAYRGIRDADYGRW DDVSDEAAVARHKLQQASAAAMRASFDPATLSAEEALSFELFNAAAARAERLFPYRNHDYIFDQMNGAQSQLPAFLINIH RVANVAEAEAYVSRIRGLGPLLDALSAQSAERAARGIQPPKWVYAYLISDIGNLLGPDNAVIEDITAKVGKLGVSDAEKA RLVAAAKAAWTESAGPAYARLLAEMKRQQAVAPTADGIWRLPDGKAYYEALLANYTTTDMTASQIHELGLAEVARIHGEM RAIMTKVGFKGSLQEFFVHLRTSPQFYHTTREAYLADVDKYVKAMEARLPAFFNTLPKAPLVVKPVEAFREKSAGKAFYQ SPSPDGSRPGTYYVNLYDLNDMSKTELEALAYHEGVPGHHLQRAVQTELTGLPPFRRFGGVTAYTEGWGLYSEELAKDMG FYTDPYSDFGRLGMELWRACRLVVDTGIHDKRWSREQAIQYLKDNTPNPQGDIEKAIERYIVYPGQATAYLIGKLKIMEL RGRAQAALGERFDFRRFHDVVLESGPVPLDILERRVDAWIAAEKG
Sequences:
>Translated_605_residues MSHLRTLARLSTGLVLLATAGCASMTGQGGPVASTPPPAAAVPAGADLAQFFENYDAALLSLAPQSKAYRGIRDADYGRW DDVSDEAAVARHKLQQASAAAMRASFDPATLSAEEALSFELFNAAAARAERLFPYRNHDYIFDQMNGAQSQLPAFLINIH RVANVAEAEAYVSRIRGLGPLLDALSAQSAERAARGIQPPKWVYAYLISDIGNLLGPDNAVIEDITAKVGKLGVSDAEKA RLVAAAKAAWTESAGPAYARLLAEMKRQQAVAPTADGIWRLPDGKAYYEALLANYTTTDMTASQIHELGLAEVARIHGEM RAIMTKVGFKGSLQEFFVHLRTSPQFYHTTREAYLADVDKYVKAMEARLPAFFNTLPKAPLVVKPVEAFREKSAGKAFYQ SPSPDGSRPGTYYVNLYDLNDMSKTELEALAYHEGVPGHHLQRAVQTELTGLPPFRRFGGVTAYTEGWGLYSEELAKDMG FYTDPYSDFGRLGMELWRACRLVVDTGIHDKRWSREQAIQYLKDNTPNPQGDIEKAIERYIVYPGQATAYLIGKLKIMEL RGRAQAALGERFDFRRFHDVVLESGPVPLDILERRVDAWIAAEKG >Mature_604_residues SHLRTLARLSTGLVLLATAGCASMTGQGGPVASTPPPAAAVPAGADLAQFFENYDAALLSLAPQSKAYRGIRDADYGRWD DVSDEAAVARHKLQQASAAAMRASFDPATLSAEEALSFELFNAAAARAERLFPYRNHDYIFDQMNGAQSQLPAFLINIHR VANVAEAEAYVSRIRGLGPLLDALSAQSAERAARGIQPPKWVYAYLISDIGNLLGPDNAVIEDITAKVGKLGVSDAEKAR LVAAAKAAWTESAGPAYARLLAEMKRQQAVAPTADGIWRLPDGKAYYEALLANYTTTDMTASQIHELGLAEVARIHGEMR AIMTKVGFKGSLQEFFVHLRTSPQFYHTTREAYLADVDKYVKAMEARLPAFFNTLPKAPLVVKPVEAFREKSAGKAFYQS PSPDGSRPGTYYVNLYDLNDMSKTELEALAYHEGVPGHHLQRAVQTELTGLPPFRRFGGVTAYTEGWGLYSEELAKDMGF YTDPYSDFGRLGMELWRACRLVVDTGIHDKRWSREQAIQYLKDNTPNPQGDIEKAIERYIVYPGQATAYLIGKLKIMELR GRAQAALGERFDFRRFHDVVLESGPVPLDILERRVDAWIAAEKG
Specific function: Unknown
COG id: COG4805
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66533; Mature: 66402
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHLRTLARLSTGLVLLATAGCASMTGQGGPVASTPPPAAAVPAGADLAQFFENYDAALL CHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH SLAPQSKAYRGIRDADYGRWDDVSDEAAVARHKLQQASAAAMRASFDPATLSAEEALSFE HCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH LFNAAAARAERLFPYRNHDYIFDQMNGAQSQLPAFLINIHRVANVAEAEAYVSRIRGLGP HHHHHHHHHHHCCCCCCCCEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH LLDALSAQSAERAARGIQPPKWVYAYLISDIGNLLGPDNAVIEDITAKVGKLGVSDAEKA HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHH RLVAAAKAAWTESAGPAYARLLAEMKRQQAVAPTADGIWRLPDGKAYYEALLANYTTTDM HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHCCCCCCC TASQIHELGLAEVARIHGEMRAIMTKVGFKGSLQEFFVHLRTSPQFYHTTREAYLADVDK CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH YVKAMEARLPAFFNTLPKAPLVVKPVEAFREKSAGKAFYQSPSPDGSRPGTYYVNLYDLN HHHHHHHHCCHHHHHCCCCCEEECCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECC DMSKTELEALAYHEGVPGHHLQRAVQTELTGLPPFRRFGGVTAYTEGWGLYSEELAKDMG CCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHCCCEEEECCCCCHHHHHHHHCC FYTDPYSDFGRLGMELWRACRLVVDTGIHDKRWSREQAIQYLKDNTPNPQGDIEKAIERY CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHCCCCCCCHHHHHHHHHH IVYPGQATAYLIGKLKIMELRGRAQAALGERFDFRRFHDVVLESGPVPLDILERRVDAWI EECCCCHHHHHHHHHHEEHHHCHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH AAEKG HCCCC >Mature Secondary Structure SHLRTLARLSTGLVLLATAGCASMTGQGGPVASTPPPAAAVPAGADLAQFFENYDAALL HHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH SLAPQSKAYRGIRDADYGRWDDVSDEAAVARHKLQQASAAAMRASFDPATLSAEEALSFE HCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH LFNAAAARAERLFPYRNHDYIFDQMNGAQSQLPAFLINIHRVANVAEAEAYVSRIRGLGP HHHHHHHHHHHCCCCCCCCEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH LLDALSAQSAERAARGIQPPKWVYAYLISDIGNLLGPDNAVIEDITAKVGKLGVSDAEKA HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHH RLVAAAKAAWTESAGPAYARLLAEMKRQQAVAPTADGIWRLPDGKAYYEALLANYTTTDM HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHCCCCCCC TASQIHELGLAEVARIHGEMRAIMTKVGFKGSLQEFFVHLRTSPQFYHTTREAYLADVDK CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH YVKAMEARLPAFFNTLPKAPLVVKPVEAFREKSAGKAFYQSPSPDGSRPGTYYVNLYDLN HHHHHHHHCCHHHHHCCCCCEEECCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECC DMSKTELEALAYHEGVPGHHLQRAVQTELTGLPPFRRFGGVTAYTEGWGLYSEELAKDMG CCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHCCCEEEECCCCCHHHHHHHHCC FYTDPYSDFGRLGMELWRACRLVVDTGIHDKRWSREQAIQYLKDNTPNPQGDIEKAIERY CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHCCCCCCCHHHHHHHHHH IVYPGQATAYLIGKLKIMELRGRAQAALGERFDFRRFHDVVLESGPVPLDILERRVDAWI EECCCCHHHHHHHHHHEEHHHCHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH AAEKG HCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA