Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486172

Identifier: 103486172

GI number: 103486172

Start: 686628

End: 688445

Strand: Reverse

Name: 103486172

Synonym: Sala_0679

Alternate gene names: NA

Gene position: 688445-686628 (Counterclockwise)

Preceding gene: 103486176

Following gene: 103486171

Centisome position: 20.58

GC content: 64.8

Gene sequence:

>1818_bases
GTGTCGCACCTTCGCACCCTCGCTCGTCTGTCCACCGGCCTTGTCCTGCTTGCCACGGCGGGCTGTGCGTCCATGACCGG
GCAGGGCGGCCCCGTGGCGAGCACGCCGCCCCCGGCGGCGGCGGTGCCGGCTGGCGCCGATCTTGCGCAATTCTTTGAAA
ATTACGACGCCGCGCTGCTGTCGCTGGCGCCGCAGAGCAAGGCCTATCGCGGCATTCGCGACGCCGACTATGGCCGCTGG
GACGACGTCAGCGACGAAGCCGCGGTCGCGCGCCACAAATTGCAGCAGGCCAGCGCCGCGGCAATGCGCGCGAGCTTCGA
CCCCGCGACGCTGTCCGCCGAAGAAGCCCTGTCGTTCGAGCTGTTCAACGCCGCAGCGGCGCGCGCCGAACGGCTGTTCC
CTTACCGCAATCACGACTATATCTTCGACCAGATGAACGGCGCGCAAAGCCAGCTGCCCGCCTTTCTCATCAACATCCAT
CGCGTCGCCAACGTCGCCGAAGCCGAAGCCTATGTGTCGCGCATCCGCGGGCTCGGTCCGCTGCTCGATGCGCTGTCGGC
GCAGTCGGCCGAACGTGCCGCGCGGGGAATCCAGCCGCCGAAATGGGTCTATGCCTATCTGATTTCCGACATCGGCAATC
TGCTCGGCCCCGACAATGCGGTGATCGAGGACATTACGGCGAAGGTCGGCAAGCTCGGCGTCAGCGACGCCGAAAAGGCG
CGGCTGGTCGCCGCGGCCAAGGCGGCCTGGACCGAAAGCGCCGGTCCGGCCTATGCCCGCCTGCTCGCCGAAATGAAGCG
GCAGCAGGCGGTGGCGCCGACCGCCGACGGCATCTGGCGCCTGCCCGATGGCAAGGCCTATTATGAAGCGCTGCTCGCCA
ATTACACGACGACCGACATGACCGCTTCGCAGATCCACGAACTCGGCCTCGCCGAAGTCGCGCGGATCCATGGCGAGATG
CGGGCGATCATGACGAAGGTCGGTTTCAAGGGCAGTTTGCAGGAGTTTTTCGTCCATCTGCGCACAAGCCCGCAATTTTA
TCACACGACGCGCGAAGCCTATCTGGCCGATGTCGACAAATATGTGAAAGCGATGGAGGCACGGCTCCCCGCCTTTTTCA
ACACGCTGCCGAAGGCGCCGCTGGTGGTCAAACCCGTCGAGGCGTTCCGCGAAAAGTCGGCGGGCAAGGCCTTTTACCAG
TCGCCCTCGCCCGACGGATCGCGGCCGGGCACCTATTATGTCAACCTCTATGACCTCAACGACATGTCGAAGACCGAGCT
CGAGGCGCTCGCCTATCATGAGGGCGTGCCGGGCCATCACCTCCAGCGCGCGGTGCAGACCGAGCTCACCGGCCTGCCAC
CCTTCCGCCGCTTTGGCGGCGTCACCGCCTATACCGAGGGGTGGGGGCTGTATTCGGAGGAACTCGCCAAGGACATGGGC
TTCTATACCGATCCGTACAGCGATTTCGGCCGGCTGGGCATGGAGCTGTGGCGCGCGTGCCGCCTCGTCGTCGACACCGG
CATCCACGACAAGCGCTGGAGCCGCGAACAGGCGATTCAGTATCTGAAGGACAATACCCCCAATCCGCAAGGCGATATTG
AAAAGGCGATCGAGCGTTATATCGTCTATCCGGGGCAGGCGACCGCCTACCTCATCGGCAAGCTCAAGATCATGGAGCTG
CGCGGGCGCGCGCAGGCGGCGCTTGGCGAACGCTTCGATTTCCGCCGCTTCCACGATGTCGTGCTGGAATCGGGGCCGGT
GCCGCTCGATATCCTCGAACGGCGGGTCGATGCGTGGATCGCGGCTGAAAAAGGTTAA

Upstream 100 bases:

>100_bases
GGCGTCGGTGAGCGAAGCGAAAAGCGACATGGCCCGCCATTGCGCGCCCGGCGGCGCTATGGCAAGCCCCCGCCATATCC
GCAAAAACCGGGAGAAAATC

Downstream 100 bases:

>100_bases
GGCGGTTGACGAATGCGCTTGACGCACACCCCGGAAAAGCAAATGATTTGATTCAGATAAGCAGGCGGCCGGGGAAAGGC
CGTCGGGGGTCTGGGTCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 605; Mature: 604

Protein sequence:

>605_residues
MSHLRTLARLSTGLVLLATAGCASMTGQGGPVASTPPPAAAVPAGADLAQFFENYDAALLSLAPQSKAYRGIRDADYGRW
DDVSDEAAVARHKLQQASAAAMRASFDPATLSAEEALSFELFNAAAARAERLFPYRNHDYIFDQMNGAQSQLPAFLINIH
RVANVAEAEAYVSRIRGLGPLLDALSAQSAERAARGIQPPKWVYAYLISDIGNLLGPDNAVIEDITAKVGKLGVSDAEKA
RLVAAAKAAWTESAGPAYARLLAEMKRQQAVAPTADGIWRLPDGKAYYEALLANYTTTDMTASQIHELGLAEVARIHGEM
RAIMTKVGFKGSLQEFFVHLRTSPQFYHTTREAYLADVDKYVKAMEARLPAFFNTLPKAPLVVKPVEAFREKSAGKAFYQ
SPSPDGSRPGTYYVNLYDLNDMSKTELEALAYHEGVPGHHLQRAVQTELTGLPPFRRFGGVTAYTEGWGLYSEELAKDMG
FYTDPYSDFGRLGMELWRACRLVVDTGIHDKRWSREQAIQYLKDNTPNPQGDIEKAIERYIVYPGQATAYLIGKLKIMEL
RGRAQAALGERFDFRRFHDVVLESGPVPLDILERRVDAWIAAEKG

Sequences:

>Translated_605_residues
MSHLRTLARLSTGLVLLATAGCASMTGQGGPVASTPPPAAAVPAGADLAQFFENYDAALLSLAPQSKAYRGIRDADYGRW
DDVSDEAAVARHKLQQASAAAMRASFDPATLSAEEALSFELFNAAAARAERLFPYRNHDYIFDQMNGAQSQLPAFLINIH
RVANVAEAEAYVSRIRGLGPLLDALSAQSAERAARGIQPPKWVYAYLISDIGNLLGPDNAVIEDITAKVGKLGVSDAEKA
RLVAAAKAAWTESAGPAYARLLAEMKRQQAVAPTADGIWRLPDGKAYYEALLANYTTTDMTASQIHELGLAEVARIHGEM
RAIMTKVGFKGSLQEFFVHLRTSPQFYHTTREAYLADVDKYVKAMEARLPAFFNTLPKAPLVVKPVEAFREKSAGKAFYQ
SPSPDGSRPGTYYVNLYDLNDMSKTELEALAYHEGVPGHHLQRAVQTELTGLPPFRRFGGVTAYTEGWGLYSEELAKDMG
FYTDPYSDFGRLGMELWRACRLVVDTGIHDKRWSREQAIQYLKDNTPNPQGDIEKAIERYIVYPGQATAYLIGKLKIMEL
RGRAQAALGERFDFRRFHDVVLESGPVPLDILERRVDAWIAAEKG
>Mature_604_residues
SHLRTLARLSTGLVLLATAGCASMTGQGGPVASTPPPAAAVPAGADLAQFFENYDAALLSLAPQSKAYRGIRDADYGRWD
DVSDEAAVARHKLQQASAAAMRASFDPATLSAEEALSFELFNAAAARAERLFPYRNHDYIFDQMNGAQSQLPAFLINIHR
VANVAEAEAYVSRIRGLGPLLDALSAQSAERAARGIQPPKWVYAYLISDIGNLLGPDNAVIEDITAKVGKLGVSDAEKAR
LVAAAKAAWTESAGPAYARLLAEMKRQQAVAPTADGIWRLPDGKAYYEALLANYTTTDMTASQIHELGLAEVARIHGEMR
AIMTKVGFKGSLQEFFVHLRTSPQFYHTTREAYLADVDKYVKAMEARLPAFFNTLPKAPLVVKPVEAFREKSAGKAFYQS
PSPDGSRPGTYYVNLYDLNDMSKTELEALAYHEGVPGHHLQRAVQTELTGLPPFRRFGGVTAYTEGWGLYSEELAKDMGF
YTDPYSDFGRLGMELWRACRLVVDTGIHDKRWSREQAIQYLKDNTPNPQGDIEKAIERYIVYPGQATAYLIGKLKIMELR
GRAQAALGERFDFRRFHDVVLESGPVPLDILERRVDAWIAAEKG

Specific function: Unknown

COG id: COG4805

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 66533; Mature: 66402

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHLRTLARLSTGLVLLATAGCASMTGQGGPVASTPPPAAAVPAGADLAQFFENYDAALL
CHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
SLAPQSKAYRGIRDADYGRWDDVSDEAAVARHKLQQASAAAMRASFDPATLSAEEALSFE
HCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
LFNAAAARAERLFPYRNHDYIFDQMNGAQSQLPAFLINIHRVANVAEAEAYVSRIRGLGP
HHHHHHHHHHHCCCCCCCCEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LLDALSAQSAERAARGIQPPKWVYAYLISDIGNLLGPDNAVIEDITAKVGKLGVSDAEKA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHH
RLVAAAKAAWTESAGPAYARLLAEMKRQQAVAPTADGIWRLPDGKAYYEALLANYTTTDM
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHCCCCCCC
TASQIHELGLAEVARIHGEMRAIMTKVGFKGSLQEFFVHLRTSPQFYHTTREAYLADVDK
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
YVKAMEARLPAFFNTLPKAPLVVKPVEAFREKSAGKAFYQSPSPDGSRPGTYYVNLYDLN
HHHHHHHHCCHHHHHCCCCCEEECCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECC
DMSKTELEALAYHEGVPGHHLQRAVQTELTGLPPFRRFGGVTAYTEGWGLYSEELAKDMG
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHCCCEEEECCCCCHHHHHHHHCC
FYTDPYSDFGRLGMELWRACRLVVDTGIHDKRWSREQAIQYLKDNTPNPQGDIEKAIERY
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHCCCCCCCHHHHHHHHHH
IVYPGQATAYLIGKLKIMELRGRAQAALGERFDFRRFHDVVLESGPVPLDILERRVDAWI
EECCCCHHHHHHHHHHEEHHHCHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
AAEKG
HCCCC
>Mature Secondary Structure 
SHLRTLARLSTGLVLLATAGCASMTGQGGPVASTPPPAAAVPAGADLAQFFENYDAALL
HHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
SLAPQSKAYRGIRDADYGRWDDVSDEAAVARHKLQQASAAAMRASFDPATLSAEEALSFE
HCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
LFNAAAARAERLFPYRNHDYIFDQMNGAQSQLPAFLINIHRVANVAEAEAYVSRIRGLGP
HHHHHHHHHHHCCCCCCCCEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LLDALSAQSAERAARGIQPPKWVYAYLISDIGNLLGPDNAVIEDITAKVGKLGVSDAEKA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHH
RLVAAAKAAWTESAGPAYARLLAEMKRQQAVAPTADGIWRLPDGKAYYEALLANYTTTDM
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHCCCCCCC
TASQIHELGLAEVARIHGEMRAIMTKVGFKGSLQEFFVHLRTSPQFYHTTREAYLADVDK
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
YVKAMEARLPAFFNTLPKAPLVVKPVEAFREKSAGKAFYQSPSPDGSRPGTYYVNLYDLN
HHHHHHHHCCHHHHHCCCCCEEECCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECC
DMSKTELEALAYHEGVPGHHLQRAVQTELTGLPPFRRFGGVTAYTEGWGLYSEELAKDMG
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHCCCEEEECCCCCHHHHHHHHCC
FYTDPYSDFGRLGMELWRACRLVVDTGIHDKRWSREQAIQYLKDNTPNPQGDIEKAIERY
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHCCCCCCCHHHHHHHHHH
IVYPGQATAYLIGKLKIMELRGRAQAALGERFDFRRFHDVVLESGPVPLDILERRVDAWI
EECCCCHHHHHHHHHHEEHHHCHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
AAEKG
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA