Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486092

Identifier: 103486092

GI number: 103486092

Start: 607540

End: 608892

Strand: Reverse

Name: 103486092

Synonym: Sala_0599

Alternate gene names: NA

Gene position: 608892-607540 (Counterclockwise)

Preceding gene: 103486093

Following gene: 103486091

Centisome position: 18.2

GC content: 65.85

Gene sequence:

>1353_bases
ATGACAAAACTGCTCCCGCTTTCGCTGGTCGCGGCCACGATACTCGCCGGATGTGCCGCCGGTCCCGCCAAAGCGCCTTC
GGGCGAGCCGGGGGTCGCGGCGCTCGACGTCCGCCGCACGGCCGCGGATGCCGCAGCGCTCGACGCGATCGCCGCCACCT
ACCTTCGCCTGTCGCTTGAAATCGGCACGCACGAGCCGGGCTATATCGACGCCTATTACGGCCCGGCCGAACTGAAGGCC
GCGGCCGAAGCCAACCCGCGCGAAAAGGCGGCGCTGCTCGCCGCGACGCGCGCGCTGCTGGCGGAAACCGATCGCACCGC
GCGGCGCCTGAGCAACCCGCTCGCCAGGCGGCGCGCGGCATTCCTCAGCGCGCAGCTTCGCGCCGCCGAAACGCGGCTGA
TGATGATGGACGGCACGCGCTTCGCTTTCGTCGACGAGGCCGAGCGGCTGTTCGGCGTGCGTCCGCAACTGAAACCGCTC
GCAAGCTATGACACCGAGCTGGCGAAGATCGAAGCGCTCGTCCCGGGCAAGGGACCGCTCGCCGATCGGGTCGAGGCTTA
TCTCGACGCCTTCACCATTCCCAAGGACCGGCTGCGACCGACATTCGAGGCGGCCATCGCGCACTGCCGCAGACGCAGCC
TCGCGCATATTCCGATGCCCGCGGAGGAGAGCTTTCGCCTCGAGTTCGTCACCGACAAGAGCTGGAGCGGCTATAATTAT
TACCAGGGCGGTTATCACAGCCTGATCCAGGTCAATACCGACCTGCCGATCCGCCTGTCGCGCGCACTCGATCTTGGCTG
CCACGAAGGCTATCCGGGCCATCACCTCCTCAACATGAAGCTTGAGGAGAAACTGGTGAAGGAGCGCGGCTGGGCCGAGT
TCAGCGTCTATCCGCTCTACAGCCCGCAGAGCCTGATTGCCGAGGGCAGCGCCAATTACGGCATTGATCTGTCCTTTCCG
GGCGAAGCCAAGGCCGCGACCGAACGGGACATACTGATGCCGATCGCCGGGATCGCAGTGCCCGCCGACGACCGTTACTG
GCAGCTGCTCGCAGCGATCAAGCGCGCGTCGGGGGCGCGGTTGACGATCGCGCAGCAATATCTCGACGGCGAAATCGACC
GGTCAACGGCGGTGGCGCTCACCCAGAAATATCTGCTCGTCTCGCAGCCGCGCGCCGAACAGTCGGTGCGCTTTACCGAG
CAGTATCGCAGCTATGTCATCAACTATGGCCTCGGCGAAGCGATGGTGCGCGCCTATGTCGAACGCGGGCGGCCGAGCCG
CGACGAAATGTGGCGCCGCATGGAGCGGATCGTCAGCGAGCCGACGCTGCCGTCGGATTTGATGGAACGATAG

Upstream 100 bases:

>100_bases
CCATCCCGAACATAATGCCGTCGAATCGGCATCGAAAGGCGAAATTGCCGTCGACGGCGACGTGCGCGACACGTCCGAAG
CGGCCCGCTAGGCAAGCGAT

Downstream 100 bases:

>100_bases
CCGCGATATCCGTTGGAGCGGCGAACTGTTATAGCGGTGCGATACACCAGAGGAGTCGATGCCATGATCCGTTCGCTGAC
CCTTGCCCTGCTGCTCGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 449

Protein sequence:

>450_residues
MTKLLPLSLVAATILAGCAAGPAKAPSGEPGVAALDVRRTAADAAALDAIAATYLRLSLEIGTHEPGYIDAYYGPAELKA
AAEANPREKAALLAATRALLAETDRTARRLSNPLARRRAAFLSAQLRAAETRLMMMDGTRFAFVDEAERLFGVRPQLKPL
ASYDTELAKIEALVPGKGPLADRVEAYLDAFTIPKDRLRPTFEAAIAHCRRRSLAHIPMPAEESFRLEFVTDKSWSGYNY
YQGGYHSLIQVNTDLPIRLSRALDLGCHEGYPGHHLLNMKLEEKLVKERGWAEFSVYPLYSPQSLIAEGSANYGIDLSFP
GEAKAATERDILMPIAGIAVPADDRYWQLLAAIKRASGARLTIAQQYLDGEIDRSTAVALTQKYLLVSQPRAEQSVRFTE
QYRSYVINYGLGEAMVRAYVERGRPSRDEMWRRMERIVSEPTLPSDLMER

Sequences:

>Translated_450_residues
MTKLLPLSLVAATILAGCAAGPAKAPSGEPGVAALDVRRTAADAAALDAIAATYLRLSLEIGTHEPGYIDAYYGPAELKA
AAEANPREKAALLAATRALLAETDRTARRLSNPLARRRAAFLSAQLRAAETRLMMMDGTRFAFVDEAERLFGVRPQLKPL
ASYDTELAKIEALVPGKGPLADRVEAYLDAFTIPKDRLRPTFEAAIAHCRRRSLAHIPMPAEESFRLEFVTDKSWSGYNY
YQGGYHSLIQVNTDLPIRLSRALDLGCHEGYPGHHLLNMKLEEKLVKERGWAEFSVYPLYSPQSLIAEGSANYGIDLSFP
GEAKAATERDILMPIAGIAVPADDRYWQLLAAIKRASGARLTIAQQYLDGEIDRSTAVALTQKYLLVSQPRAEQSVRFTE
QYRSYVINYGLGEAMVRAYVERGRPSRDEMWRRMERIVSEPTLPSDLMER
>Mature_449_residues
TKLLPLSLVAATILAGCAAGPAKAPSGEPGVAALDVRRTAADAAALDAIAATYLRLSLEIGTHEPGYIDAYYGPAELKAA
AEANPREKAALLAATRALLAETDRTARRLSNPLARRRAAFLSAQLRAAETRLMMMDGTRFAFVDEAERLFGVRPQLKPLA
SYDTELAKIEALVPGKGPLADRVEAYLDAFTIPKDRLRPTFEAAIAHCRRRSLAHIPMPAEESFRLEFVTDKSWSGYNYY
QGGYHSLIQVNTDLPIRLSRALDLGCHEGYPGHHLLNMKLEEKLVKERGWAEFSVYPLYSPQSLIAEGSANYGIDLSFPG
EAKAATERDILMPIAGIAVPADDRYWQLLAAIKRASGARLTIAQQYLDGEIDRSTAVALTQKYLLVSQPRAEQSVRFTEQ
YRSYVINYGLGEAMVRAYVERGRPSRDEMWRRMERIVSEPTLPSDLMER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49774; Mature: 49642

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLLPLSLVAATILAGCAAGPAKAPSGEPGVAALDVRRTAADAAALDAIAATYLRLSLE
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHEEEEE
IGTHEPGYIDAYYGPAELKAAAEANPREKAALLAATRALLAETDRTARRLSNPLARRRAA
ECCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLSAQLRAAETRLMMMDGTRFAFVDEAERLFGVRPQLKPLASYDTELAKIEALVPGKGPL
HHHHHHHHHHHEEEEECCCEEEEHHHHHHHHCCCCCCCHHHHCCHHHHHEEEECCCCCCH
ADRVEAYLDAFTIPKDRLRPTFEAAIAHCRRRSLAHIPMPAEESFRLEFVTDKSWSGYNY
HHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCC
YQGGYHSLIQVNTDLPIRLSRALDLGCHEGYPGHHLLNMKLEEKLVKERGWAEFSVYPLY
CCCCCEEEEEECCCCCEEEHHHHHCCCCCCCCCCEEECCHHHHHHHHHCCCCEEEEEECC
SPQSLIAEGSANYGIDLSFPGEAKAATERDILMPIAGIAVPADDRYWQLLAAIKRASGAR
CCHHHHHCCCCCCCEEEECCCCCCCCCCCCCEEECCCEEECCCCHHHHHHHHHHHCCCCE
LTIAQQYLDGEIDRSTAVALTQKYLLVSQPRAEQSVRFTEQYRSYVINYGLGEAMVRAYV
EEEEHHHHCCCCCCHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
ERGRPSRDEMWRRMERIVSEPTLPSDLMER
HHCCCCHHHHHHHHHHHHCCCCCCHHHHCC
>Mature Secondary Structure 
TKLLPLSLVAATILAGCAAGPAKAPSGEPGVAALDVRRTAADAAALDAIAATYLRLSLE
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHEEEEE
IGTHEPGYIDAYYGPAELKAAAEANPREKAALLAATRALLAETDRTARRLSNPLARRRAA
ECCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLSAQLRAAETRLMMMDGTRFAFVDEAERLFGVRPQLKPLASYDTELAKIEALVPGKGPL
HHHHHHHHHHHEEEEECCCEEEEHHHHHHHHCCCCCCCHHHHCCHHHHHEEEECCCCCCH
ADRVEAYLDAFTIPKDRLRPTFEAAIAHCRRRSLAHIPMPAEESFRLEFVTDKSWSGYNY
HHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCC
YQGGYHSLIQVNTDLPIRLSRALDLGCHEGYPGHHLLNMKLEEKLVKERGWAEFSVYPLY
CCCCCEEEEEECCCCCEEEHHHHHCCCCCCCCCCEEECCHHHHHHHHHCCCCEEEEEECC
SPQSLIAEGSANYGIDLSFPGEAKAATERDILMPIAGIAVPADDRYWQLLAAIKRASGAR
CCHHHHHCCCCCCCEEEECCCCCCCCCCCCCEEECCCEEECCCCHHHHHHHHHHHCCCCE
LTIAQQYLDGEIDRSTAVALTQKYLLVSQPRAEQSVRFTEQYRSYVINYGLGEAMVRAYV
EEEEHHHHCCCCCCHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
ERGRPSRDEMWRRMERIVSEPTLPSDLMER
HHCCCCHHHHHHHHHHHHCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA