| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486092
Identifier: 103486092
GI number: 103486092
Start: 607540
End: 608892
Strand: Reverse
Name: 103486092
Synonym: Sala_0599
Alternate gene names: NA
Gene position: 608892-607540 (Counterclockwise)
Preceding gene: 103486093
Following gene: 103486091
Centisome position: 18.2
GC content: 65.85
Gene sequence:
>1353_bases ATGACAAAACTGCTCCCGCTTTCGCTGGTCGCGGCCACGATACTCGCCGGATGTGCCGCCGGTCCCGCCAAAGCGCCTTC GGGCGAGCCGGGGGTCGCGGCGCTCGACGTCCGCCGCACGGCCGCGGATGCCGCAGCGCTCGACGCGATCGCCGCCACCT ACCTTCGCCTGTCGCTTGAAATCGGCACGCACGAGCCGGGCTATATCGACGCCTATTACGGCCCGGCCGAACTGAAGGCC GCGGCCGAAGCCAACCCGCGCGAAAAGGCGGCGCTGCTCGCCGCGACGCGCGCGCTGCTGGCGGAAACCGATCGCACCGC GCGGCGCCTGAGCAACCCGCTCGCCAGGCGGCGCGCGGCATTCCTCAGCGCGCAGCTTCGCGCCGCCGAAACGCGGCTGA TGATGATGGACGGCACGCGCTTCGCTTTCGTCGACGAGGCCGAGCGGCTGTTCGGCGTGCGTCCGCAACTGAAACCGCTC GCAAGCTATGACACCGAGCTGGCGAAGATCGAAGCGCTCGTCCCGGGCAAGGGACCGCTCGCCGATCGGGTCGAGGCTTA TCTCGACGCCTTCACCATTCCCAAGGACCGGCTGCGACCGACATTCGAGGCGGCCATCGCGCACTGCCGCAGACGCAGCC TCGCGCATATTCCGATGCCCGCGGAGGAGAGCTTTCGCCTCGAGTTCGTCACCGACAAGAGCTGGAGCGGCTATAATTAT TACCAGGGCGGTTATCACAGCCTGATCCAGGTCAATACCGACCTGCCGATCCGCCTGTCGCGCGCACTCGATCTTGGCTG CCACGAAGGCTATCCGGGCCATCACCTCCTCAACATGAAGCTTGAGGAGAAACTGGTGAAGGAGCGCGGCTGGGCCGAGT TCAGCGTCTATCCGCTCTACAGCCCGCAGAGCCTGATTGCCGAGGGCAGCGCCAATTACGGCATTGATCTGTCCTTTCCG GGCGAAGCCAAGGCCGCGACCGAACGGGACATACTGATGCCGATCGCCGGGATCGCAGTGCCCGCCGACGACCGTTACTG GCAGCTGCTCGCAGCGATCAAGCGCGCGTCGGGGGCGCGGTTGACGATCGCGCAGCAATATCTCGACGGCGAAATCGACC GGTCAACGGCGGTGGCGCTCACCCAGAAATATCTGCTCGTCTCGCAGCCGCGCGCCGAACAGTCGGTGCGCTTTACCGAG CAGTATCGCAGCTATGTCATCAACTATGGCCTCGGCGAAGCGATGGTGCGCGCCTATGTCGAACGCGGGCGGCCGAGCCG CGACGAAATGTGGCGCCGCATGGAGCGGATCGTCAGCGAGCCGACGCTGCCGTCGGATTTGATGGAACGATAG
Upstream 100 bases:
>100_bases CCATCCCGAACATAATGCCGTCGAATCGGCATCGAAAGGCGAAATTGCCGTCGACGGCGACGTGCGCGACACGTCCGAAG CGGCCCGCTAGGCAAGCGAT
Downstream 100 bases:
>100_bases CCGCGATATCCGTTGGAGCGGCGAACTGTTATAGCGGTGCGATACACCAGAGGAGTCGATGCCATGATCCGTTCGCTGAC CCTTGCCCTGCTGCTCGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 450; Mature: 449
Protein sequence:
>450_residues MTKLLPLSLVAATILAGCAAGPAKAPSGEPGVAALDVRRTAADAAALDAIAATYLRLSLEIGTHEPGYIDAYYGPAELKA AAEANPREKAALLAATRALLAETDRTARRLSNPLARRRAAFLSAQLRAAETRLMMMDGTRFAFVDEAERLFGVRPQLKPL ASYDTELAKIEALVPGKGPLADRVEAYLDAFTIPKDRLRPTFEAAIAHCRRRSLAHIPMPAEESFRLEFVTDKSWSGYNY YQGGYHSLIQVNTDLPIRLSRALDLGCHEGYPGHHLLNMKLEEKLVKERGWAEFSVYPLYSPQSLIAEGSANYGIDLSFP GEAKAATERDILMPIAGIAVPADDRYWQLLAAIKRASGARLTIAQQYLDGEIDRSTAVALTQKYLLVSQPRAEQSVRFTE QYRSYVINYGLGEAMVRAYVERGRPSRDEMWRRMERIVSEPTLPSDLMER
Sequences:
>Translated_450_residues MTKLLPLSLVAATILAGCAAGPAKAPSGEPGVAALDVRRTAADAAALDAIAATYLRLSLEIGTHEPGYIDAYYGPAELKA AAEANPREKAALLAATRALLAETDRTARRLSNPLARRRAAFLSAQLRAAETRLMMMDGTRFAFVDEAERLFGVRPQLKPL ASYDTELAKIEALVPGKGPLADRVEAYLDAFTIPKDRLRPTFEAAIAHCRRRSLAHIPMPAEESFRLEFVTDKSWSGYNY YQGGYHSLIQVNTDLPIRLSRALDLGCHEGYPGHHLLNMKLEEKLVKERGWAEFSVYPLYSPQSLIAEGSANYGIDLSFP GEAKAATERDILMPIAGIAVPADDRYWQLLAAIKRASGARLTIAQQYLDGEIDRSTAVALTQKYLLVSQPRAEQSVRFTE QYRSYVINYGLGEAMVRAYVERGRPSRDEMWRRMERIVSEPTLPSDLMER >Mature_449_residues TKLLPLSLVAATILAGCAAGPAKAPSGEPGVAALDVRRTAADAAALDAIAATYLRLSLEIGTHEPGYIDAYYGPAELKAA AEANPREKAALLAATRALLAETDRTARRLSNPLARRRAAFLSAQLRAAETRLMMMDGTRFAFVDEAERLFGVRPQLKPLA SYDTELAKIEALVPGKGPLADRVEAYLDAFTIPKDRLRPTFEAAIAHCRRRSLAHIPMPAEESFRLEFVTDKSWSGYNYY QGGYHSLIQVNTDLPIRLSRALDLGCHEGYPGHHLLNMKLEEKLVKERGWAEFSVYPLYSPQSLIAEGSANYGIDLSFPG EAKAATERDILMPIAGIAVPADDRYWQLLAAIKRASGARLTIAQQYLDGEIDRSTAVALTQKYLLVSQPRAEQSVRFTEQ YRSYVINYGLGEAMVRAYVERGRPSRDEMWRRMERIVSEPTLPSDLMER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49774; Mature: 49642
Theoretical pI: Translated: 8.04; Mature: 8.04
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKLLPLSLVAATILAGCAAGPAKAPSGEPGVAALDVRRTAADAAALDAIAATYLRLSLE CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHEEEEE IGTHEPGYIDAYYGPAELKAAAEANPREKAALLAATRALLAETDRTARRLSNPLARRRAA ECCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FLSAQLRAAETRLMMMDGTRFAFVDEAERLFGVRPQLKPLASYDTELAKIEALVPGKGPL HHHHHHHHHHHEEEEECCCEEEEHHHHHHHHCCCCCCCHHHHCCHHHHHEEEECCCCCCH ADRVEAYLDAFTIPKDRLRPTFEAAIAHCRRRSLAHIPMPAEESFRLEFVTDKSWSGYNY HHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCC YQGGYHSLIQVNTDLPIRLSRALDLGCHEGYPGHHLLNMKLEEKLVKERGWAEFSVYPLY CCCCCEEEEEECCCCCEEEHHHHHCCCCCCCCCCEEECCHHHHHHHHHCCCCEEEEEECC SPQSLIAEGSANYGIDLSFPGEAKAATERDILMPIAGIAVPADDRYWQLLAAIKRASGAR CCHHHHHCCCCCCCEEEECCCCCCCCCCCCCEEECCCEEECCCCHHHHHHHHHHHCCCCE LTIAQQYLDGEIDRSTAVALTQKYLLVSQPRAEQSVRFTEQYRSYVINYGLGEAMVRAYV EEEEHHHHCCCCCCHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH ERGRPSRDEMWRRMERIVSEPTLPSDLMER HHCCCCHHHHHHHHHHHHCCCCCCHHHHCC >Mature Secondary Structure TKLLPLSLVAATILAGCAAGPAKAPSGEPGVAALDVRRTAADAAALDAIAATYLRLSLE CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHEEEEE IGTHEPGYIDAYYGPAELKAAAEANPREKAALLAATRALLAETDRTARRLSNPLARRRAA ECCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FLSAQLRAAETRLMMMDGTRFAFVDEAERLFGVRPQLKPLASYDTELAKIEALVPGKGPL HHHHHHHHHHHEEEEECCCEEEEHHHHHHHHCCCCCCCHHHHCCHHHHHEEEECCCCCCH ADRVEAYLDAFTIPKDRLRPTFEAAIAHCRRRSLAHIPMPAEESFRLEFVTDKSWSGYNY HHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCC YQGGYHSLIQVNTDLPIRLSRALDLGCHEGYPGHHLLNMKLEEKLVKERGWAEFSVYPLY CCCCCEEEEEECCCCCEEEHHHHHCCCCCCCCCCEEECCHHHHHHHHHCCCCEEEEEECC SPQSLIAEGSANYGIDLSFPGEAKAATERDILMPIAGIAVPADDRYWQLLAAIKRASGAR CCHHHHHCCCCCCCEEEECCCCCCCCCCCCCEEECCCEEECCCCHHHHHHHHHHHCCCCE LTIAQQYLDGEIDRSTAVALTQKYLLVSQPRAEQSVRFTEQYRSYVINYGLGEAMVRAYV EEEEHHHHCCCCCCHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH ERGRPSRDEMWRRMERIVSEPTLPSDLMER HHCCCCHHHHHHHHHHHHCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA