| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is yeeZ [C]
Identifier: 103485967
GI number: 103485967
Start: 489401
End: 490189
Strand: Reverse
Name: yeeZ [C]
Synonym: Sala_0474
Alternate gene names: 103485967
Gene position: 490189-489401 (Counterclockwise)
Preceding gene: 103485969
Following gene: 103485961
Centisome position: 14.65
GC content: 70.47
Gene sequence:
>789_bases ATGGCACGGATGCTGATTTTCGGGATGGGCTATGCGGCGGGGCACCTCGCCGAGCGGCTGCGCGCGCGCGGCTGGGAGGT GACGGGAACGACGCGCGACGGTCGCGCGGACAGCATCGCCTTCGGTGACGAGACCGCCGTGCTCGCCGCGCTGCGCACCG CGACGCACATATTGTCGTCAGTTCCGCCCGCGGGCGAAGCCGACCCGGTGCTCGCACGCTATGGCGAGGCGATCGCGCTC GCCCCCGCAACCTGGACGGGCTATCTGTCCTCAACCGGCGTCTATGGCGATGCGGGCGGCGCCTGGGTCGACGAAAGCGC ACCCGTCCGGGGCCGCCGCGCCGGGCGCAACGCCGCCGACGCCGCATGGAGCGCATTGCGCGGCGACATGTGCGTCTTTC GCCTGCCCGGCATCTATGGCCCCGGCCGCTCGATTCTCGATCGCATCGCCGAAGGCCGCGCGCACCGCATCGCCCTGCCC GACCAGGTGTTCAGCCGCATCCATGTCGATGACATTGCGGGCGGCATCATTGCGTCGTTCCGCGGCCCCGCGGGCGTCTA TAACCTCGCCGACGACGAACCCTGCCACCAGAACCGCCTCGTCGAATGGGGCTGCGCCATGCTCGGCGCGCCGCTGCCGC CGATGCAGTCGCTCGACGAAGCGGGCCTGTCGCCCGCCGCGCGCGCCTTCTATGCCGAAAACCGCCGCGTGGCAAACGGC AAGGCGAAGCGATTGTTGGGGTGGAGACCGCGCTATCCGAGTTTTCGCGAGGGGCTCGCCAGCCTTTAG
Upstream 100 bases:
>100_bases GTCGCCGCGATGGATGGTGACGGGAATGGCGGGGGTCGAGGAGGCGTCGGTCATGCGTTCGGTCTAGGCATCGCGGCGCC GACGCGCAATAAGGCGCGCG
Downstream 100 bases:
>100_bases ATCAGCACATCGACCGTGTGGATCGCCACCCCCACCAGCCCCCCAACGAGCGTGCCGTTGATGCGGATATATTGCAGATC GTCGCCGACCGCATTTTCCA
Product: NAD-dependent epimerase/dehydratase
Products: NA
Alternate protein names: Nucleoside-Diphosphate-Sugar Epimerase; Oxidoreductase Protein; Nucleoside-Diphosphate-Sugar Epimerases; Nucleoside-Diphosphate-Sugar Epimerase Protein; NAD Dependent Epimerase/Dehydratase; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase; NAD-Dependent Epimerase/Dehydratase Family Protein; NAD Dependent Epimerase/Dehydratase Family; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase Family; ActC Family Protein; NAD Epimerase/Dehydratase Protein; NAD-Dependent Epimerase; Actc Protein; NAD Dependent Epimerase/Dehydratase Family Protein; Sugar Epimerase/Dehydratase-Like Protein
Number of amino acids: Translated: 262; Mature: 261
Protein sequence:
>262_residues MARMLIFGMGYAAGHLAERLRARGWEVTGTTRDGRADSIAFGDETAVLAALRTATHILSSVPPAGEADPVLARYGEAIAL APATWTGYLSSTGVYGDAGGAWVDESAPVRGRRAGRNAADAAWSALRGDMCVFRLPGIYGPGRSILDRIAEGRAHRIALP DQVFSRIHVDDIAGGIIASFRGPAGVYNLADDEPCHQNRLVEWGCAMLGAPLPPMQSLDEAGLSPAARAFYAENRRVANG KAKRLLGWRPRYPSFREGLASL
Sequences:
>Translated_262_residues MARMLIFGMGYAAGHLAERLRARGWEVTGTTRDGRADSIAFGDETAVLAALRTATHILSSVPPAGEADPVLARYGEAIAL APATWTGYLSSTGVYGDAGGAWVDESAPVRGRRAGRNAADAAWSALRGDMCVFRLPGIYGPGRSILDRIAEGRAHRIALP DQVFSRIHVDDIAGGIIASFRGPAGVYNLADDEPCHQNRLVEWGCAMLGAPLPPMQSLDEAGLSPAARAFYAENRRVANG KAKRLLGWRPRYPSFREGLASL >Mature_261_residues ARMLIFGMGYAAGHLAERLRARGWEVTGTTRDGRADSIAFGDETAVLAALRTATHILSSVPPAGEADPVLARYGEAIALA PATWTGYLSSTGVYGDAGGAWVDESAPVRGRRAGRNAADAAWSALRGDMCVFRLPGIYGPGRSILDRIAEGRAHRIALPD QVFSRIHVDDIAGGIIASFRGPAGVYNLADDEPCHQNRLVEWGCAMLGAPLPPMQSLDEAGLSPAARAFYAENRRVANGK AKRLLGWRPRYPSFREGLASL
Specific function: Unknown
COG id: COG0451
COG function: function code MG; Nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27942; Mature: 27811
Theoretical pI: Translated: 8.80; Mature: 8.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARMLIFGMGYAAGHLAERLRARGWEVTGTTRDGRADSIAFGDETAVLAALRTATHILSS CCCEEEEECCHHHHHHHHHHHHCCCEEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHC VPPAGEADPVLARYGEAIALAPATWTGYLSSTGVYGDAGGAWVDESAPVRGRRAGRNAAD CCCCCCCCHHHHHCCCEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCHHH AAWSALRGDMCVFRLPGIYGPGRSILDRIAEGRAHRIALPDQVFSRIHVDDIAGGIIASF HHHHHHHCCEEEEECCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHC RGPAGVYNLADDEPCHQNRLVEWGCAMLGAPLPPMQSLDEAGLSPAARAFYAENRRVANG CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCEECCC KAKRLLGWRPRYPSFREGLASL HHHHHCCCCCCCCHHHHHHHCC >Mature Secondary Structure ARMLIFGMGYAAGHLAERLRARGWEVTGTTRDGRADSIAFGDETAVLAALRTATHILSS CCEEEEECCHHHHHHHHHHHHCCCEEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHC VPPAGEADPVLARYGEAIALAPATWTGYLSSTGVYGDAGGAWVDESAPVRGRRAGRNAAD CCCCCCCCHHHHHCCCEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCHHH AAWSALRGDMCVFRLPGIYGPGRSILDRIAEGRAHRIALPDQVFSRIHVDDIAGGIIASF HHHHHHHCCEEEEECCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHC RGPAGVYNLADDEPCHQNRLVEWGCAMLGAPLPPMQSLDEAGLSPAARAFYAENRRVANG CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCEECCC KAKRLLGWRPRYPSFREGLASL HHHHHCCCCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA