BacMap

Definition	Sphingopyxis alaskensis RB2256, complete genome.
Accession	NC_008048
Length	3,345,170

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The map label for this gene is cbpA [C]

Identifier: 103485898

GI number: 103485898

Start: 413875

End: 414807

Strand: Reverse

Name: cbpA [C]

Synonym: Sala_0404

Alternate gene names: 103485898

Gene position: 414807-413875 (Counterclockwise)

Preceding gene: 103485899

Following gene: 103485897

Centisome position: 12.4

GC content: 60.13

Gene sequence:

>933_bases
ATGGCAGATCCTTATACGATACTCGGCGTATCGCGCACCGCAGATCAGTCTGCGATCAAGAAAGCCTATCGCAAACTCGC
CAAAGAGCTTCATCCCGATCGCAACAAGGACAAGCCCGACGCGGCGGCCCGGTTCGCGGAAGTCACCCAAGCATACGATC
TTTTGAGCGATGCCGAGCAACGCGCGCGATACGACCGCGGCGAGATCGACGAGCACGGCAACCCGCGCGCACCTTACGGT
TTCGAAGATTTCCAGGGCCATGGGCCGTTCTCGGGCGGGGGACCGTTTCGATCGGCGCAGGATGGAGCGACATCCTTTCA
TTTCTCTGGCGATTCGGAGGAATTGGGGGACATCTTCGCCGATCTCTTTGGGCGGGGTCGCGGGGCTGGCGGGCGCGAAT
ATCGCCCGCGAGGAAGCGATGTGCTCTATGCGGTAAATGTCCCGTTCGAAAATATCGCCACTGCAAAACCATTCGCAATC
AACCTCGATGGCGGCGAGCAACTCGAGGTCAAGATCCCTCCGGGAACCCAGAGTGGAGATCGCCTGCGCGTTGCGGGCAA
AGGGCGGCCCGGACCGGGAGGGCGCGGTGACGCGATTCTTGAACTGACCGTCACGCTCCACCCTTTCTTCCGACAGGATG
GGGACGACATTCGCCTCGACCTGCCAATCCGGTGGGACGAGGCCGTACTCGGCGCAAAGGTGCGCGTACCCACGATCGAT
GGTCCGATCATGCTAACAGTGCCGAAGGGATCCACCTCGGGCAGAGTTCTGCGCATCAAGGGTAAAGGAATGGCCCGTCG
CCAAGGTGGGCGCGGCAATCAACTGGTGCGGTTGATGGTCGACCTTCCGCAGAACGATAAAAGCCTGGAAGCGTGGGCCA
AGGAATGGCGAGAAAAGAATGAATACAATCCCCGCTCGAAGCTGGGTGTCTAA

Upstream 100 bases:

>100_bases
TCCGGTGCCTTACCCCCCTCCGCGCTTCGCCAATGGGTGGAGGCACATATTGGCTGACCCGCATTTCCGCCCTGCATCCC
AATTTCAGGTGATTTAGTTA

Downstream 100 bases:

>100_bases
TGCGATCACATTGGGACAGGCAAGGCTGATCCGAAACGCCTGATCTGGATCAGTGGATTTGCCTGAGAAGCGACTATCAG
GTACATTTTGGCACAGGAGG

Product: heat shock protein DnaJ-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MADPYTILGVSRTADQSAIKKAYRKLAKELHPDRNKDKPDAAARFAEVTQAYDLLSDAEQRARYDRGEIDEHGNPRAPYG
FEDFQGHGPFSGGGPFRSAQDGATSFHFSGDSEELGDIFADLFGRGRGAGGREYRPRGSDVLYAVNVPFENIATAKPFAI
NLDGGEQLEVKIPPGTQSGDRLRVAGKGRPGPGGRGDAILELTVTLHPFFRQDGDDIRLDLPIRWDEAVLGAKVRVPTID
GPIMLTVPKGSTSGRVLRIKGKGMARRQGGRGNQLVRLMVDLPQNDKSLEAWAKEWREKNEYNPRSKLGV

Sequences:

>Translated_310_residues
MADPYTILGVSRTADQSAIKKAYRKLAKELHPDRNKDKPDAAARFAEVTQAYDLLSDAEQRARYDRGEIDEHGNPRAPYG
FEDFQGHGPFSGGGPFRSAQDGATSFHFSGDSEELGDIFADLFGRGRGAGGREYRPRGSDVLYAVNVPFENIATAKPFAI
NLDGGEQLEVKIPPGTQSGDRLRVAGKGRPGPGGRGDAILELTVTLHPFFRQDGDDIRLDLPIRWDEAVLGAKVRVPTID
GPIMLTVPKGSTSGRVLRIKGKGMARRQGGRGNQLVRLMVDLPQNDKSLEAWAKEWREKNEYNPRSKLGV
>Mature_309_residues
ADPYTILGVSRTADQSAIKKAYRKLAKELHPDRNKDKPDAAARFAEVTQAYDLLSDAEQRARYDRGEIDEHGNPRAPYGF
EDFQGHGPFSGGGPFRSAQDGATSFHFSGDSEELGDIFADLFGRGRGAGGREYRPRGSDVLYAVNVPFENIATAKPFAIN
LDGGEQLEVKIPPGTQSGDRLRVAGKGRPGPGGRGDAILELTVTLHPFFRQDGDDIRLDLPIRWDEAVLGAKVRVPTIDG
PIMLTVPKGSTSGRVLRIKGKGMARRQGGRGNQLVRLMVDLPQNDKSLEAWAKEWREKNEYNPRSKLGV

Specific function: DNA-Binding Protein That Preferentially Recognizes A Curved DNA Sequence. It Is Probably A Functional Analog Of Dnaj; Displays Overlapping Activities With Dnaj, But Functions Under Different Conditions, Probably Acting As A Molecular Chaperone In An Adapt

COG id: COG2214

COG function: function code O; DnaJ-class molecular chaperone

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI205360840, Length=329, Percent_Identity=27.0516717325228, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI205360838, Length=329, Percent_Identity=27.0516717325228, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI7706495, Length=346, Percent_Identity=28.9017341040462, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI6631085, Length=350, Percent_Identity=28.8571428571429, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI4504511, Length=331, Percent_Identity=27.4924471299094, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI201862587, Length=330, Percent_Identity=28.1818181818182, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI201862518, Length=330, Percent_Identity=28.1818181818182, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI56549115, Length=330, Percent_Identity=28.1818181818182, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI5453690, Length=323, Percent_Identity=28.1733746130031, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI56687498, Length=64, Percent_Identity=57.8125, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI194328760, Length=334, Percent_Identity=25.1497005988024, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI194328758, Length=334, Percent_Identity=25.1497005988024, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI39204547, Length=269, Percent_Identity=28.996282527881, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI23503241, Length=105, Percent_Identity=42.8571428571429, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI9558755, Length=132, Percent_Identity=37.8787878787879, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI47777312, Length=125, Percent_Identity=39.2, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI27151736, Length=128, Percent_Identity=39.84375, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4885495, Length=67, Percent_Identity=50.7462686567164, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI88501736, Length=128, Percent_Identity=39.84375, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI17388799, Length=67, Percent_Identity=50.7462686567164, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI5453980, Length=118, Percent_Identity=40.6779661016949, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI24308127, Length=64, Percent_Identity=43.75, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI5031741, Length=62, Percent_Identity=53.2258064516129, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI21553335, Length=147, Percent_Identity=36.0544217687075, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI45504382, Length=62, Percent_Identity=46.7741935483871, Blast_Score=66, Evalue=5e-11,
Organism=Escherichia coli, GI1787235, Length=325, Percent_Identity=33.8461538461538, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI1786197, Length=352, Percent_Identity=28.6931818181818, Blast_Score=120, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17534355, Length=319, Percent_Identity=27.8996865203762, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI212645553, Length=64, Percent_Identity=59.375, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI115532476, Length=64, Percent_Identity=51.5625, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17553098, Length=133, Percent_Identity=30.8270676691729, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17553096, Length=133, Percent_Identity=30.8270676691729, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115532378, Length=114, Percent_Identity=37.719298245614, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI86563276, Length=68, Percent_Identity=48.5294117647059, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17507263, Length=62, Percent_Identity=46.7741935483871, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322194, Length=97, Percent_Identity=42.2680412371134, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323870, Length=64, Percent_Identity=45.3125, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323813, Length=62, Percent_Identity=51.6129032258064, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI19920464, Length=311, Percent_Identity=27.0096463022508, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI18858081, Length=330, Percent_Identity=29.3939393939394, Blast_Score=95, Evalue=8e-20,
Organism=Drosophila melanogaster, GI85726398, Length=360, Percent_Identity=28.3333333333333, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24658562, Length=325, Percent_Identity=28.3076923076923, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24658555, Length=325, Percent_Identity=28.3076923076923, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI45552813, Length=63, Percent_Identity=52.3809523809524, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI45549272, Length=63, Percent_Identity=52.3809523809524, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24654066, Length=101, Percent_Identity=43.5643564356436, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24654070, Length=101, Percent_Identity=43.5643564356436, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24654068, Length=101, Percent_Identity=43.5643564356436, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24654072, Length=101, Percent_Identity=43.5643564356436, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI161077138, Length=66, Percent_Identity=56.0606060606061, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI45552811, Length=63, Percent_Identity=52.3809523809524, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24645889, Length=62, Percent_Identity=50, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21355911, Length=111, Percent_Identity=38.7387387387387, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24668523, Length=62, Percent_Identity=51.6129032258064, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI17737735, Length=62, Percent_Identity=51.6129032258064, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28574723, Length=62, Percent_Identity=51.6129032258064, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI20129487, Length=62, Percent_Identity=53.2258064516129, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24584014, Length=62, Percent_Identity=53.2258064516129, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI21358273, Length=69, Percent_Identity=52.1739130434783, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR018253
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]

EC number: NA

Molecular weight: Translated: 33983; Mature: 33851

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADPYTILGVSRTADQSAIKKAYRKLAKELHPDRNKDKPDAAARFAEVTQAYDLLSDAEQ
CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RARYDRGEIDEHGNPRAPYGFEDFQGHGPFSGGGPFRSAQDGATSFHFSGDSEELGDIFA
HHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHH
DLFGRGRGAGGREYRPRGSDVLYAVNVPFENIATAKPFAINLDGGEQLEVKIPPGTQSGD
HHHHCCCCCCCCCCCCCCCCEEEEEECCHHHCCCCCCEEEECCCCCEEEEEECCCCCCCC
RLRVAGKGRPGPGGRGDAILELTVTLHPFFRQDGDDIRLDLPIRWDEAVLGAKVRVPTID
EEEEEECCCCCCCCCCCEEEEEEEEECHHHCCCCCCEEEEECCCCCHHHHCCEEEECCCC
GPIMLTVPKGSTSGRVLRIKGKGMARRQGGRGNQLVRLMVDLPQNDKSLEAWAKEWREKN
CCEEEEECCCCCCCCEEEEECCCCHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHC
EYNPRSKLGV
CCCCHHHCCC
>Mature Secondary Structure 
ADPYTILGVSRTADQSAIKKAYRKLAKELHPDRNKDKPDAAARFAEVTQAYDLLSDAEQ
CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RARYDRGEIDEHGNPRAPYGFEDFQGHGPFSGGGPFRSAQDGATSFHFSGDSEELGDIFA
HHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHH
DLFGRGRGAGGREYRPRGSDVLYAVNVPFENIATAKPFAINLDGGEQLEVKIPPGTQSGD
HHHHCCCCCCCCCCCCCCCCEEEEEECCHHHCCCCCCEEEECCCCCEEEEEECCCCCCCC
RLRVAGKGRPGPGGRGDAILELTVTLHPFFRQDGDDIRLDLPIRWDEAVLGAKVRVPTID
EEEEEECCCCCCCCCCCEEEEEEEEECHHHCCCCCCEEEEECCCCCHHHHCCEEEECCCC
GPIMLTVPKGSTSGRVLRIKGKGMARRQGGRGNQLVRLMVDLPQNDKSLEAWAKEWREKN
CCEEEEECCCCCCCCEEEEECCCCHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHC
EYNPRSKLGV
CCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]