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The map label for this gene is (hspc4-1 [H]

Identifier: 103485884

GI number: 103485884

Start: 402315

End: 402815

Strand: Reverse

Name: (hspc4-1 [H]

Synonym: Sala_0389

Alternate gene names: 103485884

Gene position: 402815-402315 (Counterclockwise)

Preceding gene: 103485885

Following gene: 103485883

Centisome position: 12.04

GC content: 53.89

Gene sequence:

>501_bases
ATGATGAAGATCAAGGATCTTGTGCCATGGACGCGCTCGGAGAACCCGCGCCAGCCCGTATCGAATGCTGAGCAGGAAGA
AGCGCATCACTCTCTCAAACGTGACATCAACGCGCTTGTCGATAAGTTTGTCGAGAAGATCGGCAACCTCGATTTGCCGT
GGCAGGATAATGAAGCCAAATCGGATGTAGTCCAGGCAGGCGATGCAGTCGAAATTTCGATCGAGTTGCCCGGCATGGAT
TTGGCTGACATTGATCTTTCAATTTCGGGCGACATGCTGGTGGTGAAAGGAGAAAAGAAGGTCGAGCGGCAGGAGGAAAA
GCAAGGATACTTCCTCTCCGAGCGGGCCTACGGGCAAATCTGTCGCGCCATTCCCCTGCCCCCGGGTCTCGACACCGATG
CCGCCAAGGCCGATCTGAAAAACGGCGTATTGACCATTTCAATACCGCAGTCGGCCGAAGCGCGATCCTCGATGAAGAAG
ATTTCGGTCAACAAGGCATAA

Upstream 100 bases:

>100_bases
TGCGTCGATGCGCGACGGCGTACTTACCTTACGCCTTCATCGCTCTGAGAAACTGGCGCCCCGGAAGATTTCGGTGAAGG
CAGGATAAGAAGGAGGAACG

Downstream 100 bases:

>100_bases
CCCCTTGTCGGGGCGGGCCCAGACCGCCCGGAACTACCGACCACCGGCTAAGCACAAGCGCTTCAAATCTGGTCTCGTAA
TATGATTTGCGTGAAAGACT

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MMKIKDLVPWTRSENPRQPVSNAEQEEAHHSLKRDINALVDKFVEKIGNLDLPWQDNEAKSDVVQAGDAVEISIELPGMD
LADIDLSISGDMLVVKGEKKVERQEEKQGYFLSERAYGQICRAIPLPPGLDTDAAKADLKNGVLTISIPQSAEARSSMKK
ISVNKA

Sequences:

>Translated_166_residues
MMKIKDLVPWTRSENPRQPVSNAEQEEAHHSLKRDINALVDKFVEKIGNLDLPWQDNEAKSDVVQAGDAVEISIELPGMD
LADIDLSISGDMLVVKGEKKVERQEEKQGYFLSERAYGQICRAIPLPPGLDTDAAKADLKNGVLTISIPQSAEARSSMKK
ISVNKA
>Mature_166_residues
MMKIKDLVPWTRSENPRQPVSNAEQEEAHHSLKRDINALVDKFVEKIGNLDLPWQDNEAKSDVVQAGDAVEISIELPGMD
LADIDLSISGDMLVVKGEKKVERQEEKQGYFLSERAYGQICRAIPLPPGLDTDAAKADLKNGVLTISIPQSAEARSSMKK
ISVNKA

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 18324; Mature: 18324

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKIKDLVPWTRSENPRQPVSNAEQEEAHHSLKRDINALVDKFVEKIGNLDLPWQDNEAK
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
SDVVQAGDAVEISIELPGMDLADIDLSISGDMLVVKGEKKVERQEEKQGYFLSERAYGQI
HHHHHCCCEEEEEEECCCCCEEEEEEEECCCEEEEECCHHHHHHHHHCCCEECHHHHHHH
CRAIPLPPGLDTDAAKADLKNGVLTISIPQSAEARSSMKKISVNKA
HHHCCCCCCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MMKIKDLVPWTRSENPRQPVSNAEQEEAHHSLKRDINALVDKFVEKIGNLDLPWQDNEAK
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
SDVVQAGDAVEISIELPGMDLADIDLSISGDMLVVKGEKKVERQEEKQGYFLSERAYGQI
HHHHHCCCEEEEEEECCCCCEEEEEEEECCCEEEEECCHHHHHHHHHCCCEECHHHHHHH
CRAIPLPPGLDTDAAKADLKNGVLTISIPQSAEARSSMKKISVNKA
HHHCCCCCCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA