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The map label for this gene is exbD [H]

Identifier: 103485825

GI number: 103485825

Start: 336012

End: 336533

Strand: Reverse

Name: exbD [H]

Synonym: Sala_0330

Alternate gene names: 103485825

Gene position: 336533-336012 (Counterclockwise)

Preceding gene: 103485826

Following gene: 103485824

Centisome position: 10.06

GC content: 69.54

Gene sequence:

>522_bases
ATGGCGATGACCGGACCTTCGGGCGGCGGCGGTGGACGGCGCGGGCGCGGCCATCGCCGCGCGCCGATGTCGGAGATCAA
CGTCACGCCGCTGGTCGACGTGATGCTCGTGCTGCTGATCATTTTCATGATCACCGCGCCGCTGCTCGCCTCGGCGGTGC
CGATCGACCTGCCCGAAAGTCGCGCCAAGCCGGTCGAGACCGAGGAAGAGGAGCCGGTGCAGCTTTCGATCAATGCCGAC
GACACGCTCTATATCGGCGACGAGATCGTGCCCGAGGCCGAGCTTCCCGCACGGCTCGACGCGATTGCGCGCGAACGGCG
GGGCGAGGACAGGCCGCGCCAGATCATGCTCCGCGCCGACAAGGGACTCGATTATGGCCGGGTGATGCGCGTGATGGGCG
AGCTCAACCGCGCGGGCCTGACGCGCATCGCGCTGGTGACGACGGGCGCCGAAGCGTCGGCCGACACGCCGCCGCCGACC
GCCGACGCCGCGGTCACCGACGGTTCAGATAGCGGGCAATAG

Upstream 100 bases:

>100_bases
ACGCCTTTTCCCAGCGCCTGAATCGCCTCGAATCGCGCCTCGGCCGCTTTGCCGACGGGCTGCACGCGACGTTCAGCCGC
GAACTGGAGGTCGAGGCCTG

Downstream 100 bases:

>100_bases
GCTGGAACCATGGCCGAGGCAGGTGCAGATCGGGGGAACGAGCGACGCGGTTTTGCCATCGCGGTGGCCGCGCATGTCGT
CATCATCGGCCTGCTCTCGA

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MAMTGPSGGGGGRRGRGHRRAPMSEINVTPLVDVMLVLLIIFMITAPLLASAVPIDLPESRAKPVETEEEEPVQLSINAD
DTLYIGDEIVPEAELPARLDAIARERRGEDRPRQIMLRADKGLDYGRVMRVMGELNRAGLTRIALVTTGAEASADTPPPT
ADAAVTDGSDSGQ

Sequences:

>Translated_173_residues
MAMTGPSGGGGGRRGRGHRRAPMSEINVTPLVDVMLVLLIIFMITAPLLASAVPIDLPESRAKPVETEEEEPVQLSINAD
DTLYIGDEIVPEAELPARLDAIARERRGEDRPRQIMLRADKGLDYGRVMRVMGELNRAGLTRIALVTTGAEASADTPPPT
ADAAVTDGSDSGQ
>Mature_172_residues
AMTGPSGGGGGRRGRGHRRAPMSEINVTPLVDVMLVLLIIFMITAPLLASAVPIDLPESRAKPVETEEEEPVQLSINADD
TLYIGDEIVPEAELPARLDAIARERRGEDRPRQIMLRADKGLDYGRVMRVMGELNRAGLTRIALVTTGAEASADTPPPTA
DAAVTDGSDSGQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=124, Percent_Identity=42.741935483871, Blast_Score=101, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 18425; Mature: 18294

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMTGPSGGGGGRRGRGHRRAPMSEINVTPLVDVMLVLLIIFMITAPLLASAVPIDLPES
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RAKPVETEEEEPVQLSINADDTLYIGDEIVPEAELPARLDAIARERRGEDRPRQIMLRAD
CCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECC
KGLDYGRVMRVMGELNRAGLTRIALVTTGAEASADTPPPTADAAVTDGSDSGQ
CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCC
>Mature Secondary Structure 
AMTGPSGGGGGRRGRGHRRAPMSEINVTPLVDVMLVLLIIFMITAPLLASAVPIDLPES
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RAKPVETEEEEPVQLSINADDTLYIGDEIVPEAELPARLDAIARERRGEDRPRQIMLRAD
CCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECC
KGLDYGRVMRVMGELNRAGLTRIALVTTGAEASADTPPPTADAAVTDGSDSGQ
CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]