| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yaiN [C]
Identifier: 103485791
GI number: 103485791
Start: 295097
End: 295369
Strand: Reverse
Name: yaiN [C]
Synonym: Sala_0296
Alternate gene names: 103485791
Gene position: 295369-295097 (Counterclockwise)
Preceding gene: 103485795
Following gene: 103485790
Centisome position: 8.83
GC content: 72.16
Gene sequence:
>273_bases ATGTCGCATCTCGCCGCCCGCCCCGACCTCATCGCGCGCGTCCGCCGCATCGCGGGCCAGGTCGCCGCGGTTGAAAAGGC GCTTGCCGCCGATGCCCCGTGCGCGACGGTGCTGCACCGCGTCGCCGCGGTGCGCGGCGCGGTGAACGGCCTGCTCGCCG AGGTGATCGCCGAACATCTGAAGGATCATGTCGCGCTGCCGGGGCTCAGCGATGCGGAGCGCGCGACCGGGGCAGAGGAT CTGCTCGCGGTGATCCGCCGCTACGCGAAATAG
Upstream 100 bases:
>100_bases GGCGACGGAACCCCGGCGTTGACCCGCCGCGCGCACGCCCGGCAAGGCAAGCTGCGGCCCAGCTTGAACGCCGCCGTTAT ATAGGTTAGGGGGGTATATT
Downstream 100 bases:
>100_bases GGCGCCGCCATGTCGGACACCGCTCCCGCCCGGCATCGCCATGATTTTCTGGCCGCCGCGCACGACGACAATGCGCGGCG GACCCGATGGGTCGTCGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 90; Mature: 89
Protein sequence:
>90_residues MSHLAARPDLIARVRRIAGQVAAVEKALAADAPCATVLHRVAAVRGAVNGLLAEVIAEHLKDHVALPGLSDAERATGAED LLAVIRRYAK
Sequences:
>Translated_90_residues MSHLAARPDLIARVRRIAGQVAAVEKALAADAPCATVLHRVAAVRGAVNGLLAEVIAEHLKDHVALPGLSDAERATGAED LLAVIRRYAK >Mature_89_residues SHLAARPDLIARVRRIAGQVAAVEKALAADAPCATVLHRVAAVRGAVNGLLAEVIAEHLKDHVALPGLSDAERATGAEDL LAVIRRYAK
Specific function: Unknown
COG id: COG1937
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the frmR/rcnR family [H]
Homologues:
Organism=Escherichia coli, GI87081725, Length=84, Percent_Identity=38.0952380952381, Blast_Score=69, Evalue=5e-14, Organism=Escherichia coli, GI1788422, Length=91, Percent_Identity=41.7582417582418, Blast_Score=64, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003735 [H]
Pfam domain/function: PF02583 DUF156 [H]
EC number: NA
Molecular weight: Translated: 9423; Mature: 9292
Theoretical pI: Translated: 9.37; Mature: 9.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHLAARPDLIARVRRIAGQVAAVEKALAADAPCATVLHRVAAVRGAVNGLLAEVIAEHL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH KDHVALPGLSDAERATGAEDLLAVIRRYAK HHHHCCCCCCCHHHHCCHHHHHHHHHHHCC >Mature Secondary Structure SHLAARPDLIARVRRIAGQVAAVEKALAADAPCATVLHRVAAVRGAVNGLLAEVIAEHL CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH KDHVALPGLSDAERATGAEDLLAVIRRYAK HHHHCCCCCCCHHHHCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA