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The map label for this gene is phyR [H]

Identifier: 103485782

GI number: 103485782

Start: 284220

End: 285014

Strand: Reverse

Name: phyR [H]

Synonym: Sala_0287

Alternate gene names: 103485782

Gene position: 285014-284220 (Counterclockwise)

Preceding gene: 103485789

Following gene: 103485779

Centisome position: 8.52

GC content: 65.79

Gene sequence:

>795_bases
ATGGCATTGGGCGACGAAATCCGCGGGCATCTTCCCTATCTGCGCCGCTATGCGCGCGCGCTGACGGGCAGCCAGCAGCA
TGGCGACAATTTCGTCCACGCACTGCTGGAGGTGATCGTCGCGGCACCCGACGAGTTCCGCAGCGGCGCCGGCAGCCGCA
TCGACCTTTATCGCGGTTTTCACCGCATCTGGGAAAGCGCCTATATCGACGATGGCGAAGGCAGCGACGACGCCGAAAAC
CCGCTCGTCCGCGCGGCGCACCAGCGACTTCGGCAGATGACGCCGCTCGGTCGCCAGATATTGCTGCTCACCGCGCTCGA
AGGCTTTTCGGTCGAGGAAGCGGGACAGATCACGGGCACCGACACGGCGACGGTCGAAACGCTGCTTGCCGACGCGGTCG
CCGACCTCGACCGCGAATCGCGCACCTCGGTGCTCATCATCGAGGACGAGCCGCTGATCGCGATGGAACTCGAACAGATC
GTCCGCAGCCTGGGGCACGAGATCGCGGGAATCGCGACGACGCACGAGGATGCGGTTGCGGCGTTCGAGGACACCGATGC
CGGGCTGGTGCTTGCCGACATCCAGCTCGCCGACGGATCATCGGGGATCGACGCGGTGCAGGACATATTGGCGCGCGCGC
CGGTTCCCGCCATCTTCATCACCGCCTTTCCCGAACGGCTGCTCACCGGCGGACGGGTCGAGCCGACCTTCCTCATCTCC
AAGCCATTCCGCGAAAATACGGTGCGCGCGGCGATCAGCCAGAGCCTGCTCTTCACGCCGCAGCTCGCGGCATAG

Upstream 100 bases:

>100_bases
CCCGGCTGACTCTACGCATCACTATGCGACGGGTTGCACCTTCGGCCAGGGAACCGAACGGCGGCGAGGGCGTATCCCTG
TCTCGAAGGGAGGCGATTTG

Downstream 100 bases:

>100_bases
ACAGTGCTTTAATCAGGGGTCGACGCGCCGCCGGTCAGTTCATCGACATGGTCCATGATCGCGCGGAAGGCTTCGTGCGA
CGGCTGTTCATCGGTGCTTC

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MALGDEIRGHLPYLRRYARALTGSQQHGDNFVHALLEVIVAAPDEFRSGAGSRIDLYRGFHRIWESAYIDDGEGSDDAEN
PLVRAAHQRLRQMTPLGRQILLLTALEGFSVEEAGQITGTDTATVETLLADAVADLDRESRTSVLIIEDEPLIAMELEQI
VRSLGHEIAGIATTHEDAVAAFEDTDAGLVLADIQLADGSSGIDAVQDILARAPVPAIFITAFPERLLTGGRVEPTFLIS
KPFRENTVRAAISQSLLFTPQLAA

Sequences:

>Translated_264_residues
MALGDEIRGHLPYLRRYARALTGSQQHGDNFVHALLEVIVAAPDEFRSGAGSRIDLYRGFHRIWESAYIDDGEGSDDAEN
PLVRAAHQRLRQMTPLGRQILLLTALEGFSVEEAGQITGTDTATVETLLADAVADLDRESRTSVLIIEDEPLIAMELEQI
VRSLGHEIAGIATTHEDAVAAFEDTDAGLVLADIQLADGSSGIDAVQDILARAPVPAIFITAFPERLLTGGRVEPTFLIS
KPFRENTVRAAISQSLLFTPQLAA
>Mature_263_residues
ALGDEIRGHLPYLRRYARALTGSQQHGDNFVHALLEVIVAAPDEFRSGAGSRIDLYRGFHRIWESAYIDDGEGSDDAENP
LVRAAHQRLRQMTPLGRQILLLTALEGFSVEEAGQITGTDTATVETLLADAVADLDRESRTSVLIIEDEPLIAMELEQIV
RSLGHEIAGIATTHEDAVAAFEDTDAGLVLADIQLADGSSGIDAVQDILARAPVPAIFITAFPERLLTGGRVEPTFLISK
PFRENTVRAAISQSLLFTPQLAA

Specific function: Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However it is not known whether this regulation is direct or indirect. Also induces several de

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR014605
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28593; Mature: 28461

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALGDEIRGHLPYLRRYARALTGSQQHGDNFVHALLEVIVAAPDEFRSGAGSRIDLYRGF
CCCCHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHH
HRIWESAYIDDGEGSDDAENPLVRAAHQRLRQMTPLGRQILLLTALEGFSVEEAGQITGT
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHEEEEHHHCCCCCCCCCCCCCC
DTATVETLLADAVADLDRESRTSVLIIEDEPLIAMELEQIVRSLGHEIAGIATTHEDAVA
CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCHHHHCEEECCHHHHH
AFEDTDAGLVLADIQLADGSSGIDAVQDILARAPVPAIFITAFPERLLTGGRVEPTFLIS
HCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCEEEEC
KPFRENTVRAAISQSLLFTPQLAA
CCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ALGDEIRGHLPYLRRYARALTGSQQHGDNFVHALLEVIVAAPDEFRSGAGSRIDLYRGF
CCCHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHH
HRIWESAYIDDGEGSDDAENPLVRAAHQRLRQMTPLGRQILLLTALEGFSVEEAGQITGT
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHEEEEHHHCCCCCCCCCCCCCC
DTATVETLLADAVADLDRESRTSVLIIEDEPLIAMELEQIVRSLGHEIAGIATTHEDAVA
CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCHHHHCEEECCHHHHH
AFEDTDAGLVLADIQLADGSSGIDAVQDILARAPVPAIFITAFPERLLTGGRVEPTFLIS
HCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCEEEEC
KPFRENTVRAAISQSLLFTPQLAA
CCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA